ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120981.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-15
2dbj|AK105595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-15
3dbj|AK100704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-15
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
5dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
6dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
7ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa826... 76 1e-10
8gb|AC016229.10| Homo sapiens chromosome 18, clone RP11-27G24, co... 44 0.37
9ref|XM_473065.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
10emb|AL356513.15| Human DNA sequence from clone RP11-108A15 on ch... 42 1.5
11gb|AC023725.5| Drosophila melanogaster X BAC RP98-9I10 (Roswell ... 42 1.5
12gb|AC105352.2| Drosophila melanogaster X BAC RP98-45O17 (Roswell... 42 1.5
13gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell... 42 1.5
14gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome... 42 1.5
15gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, com... 42 1.5
16gb|AC009533.10| Homo sapiens 12 BAC RP11-22B23 (Roswell Park Can... 42 1.5
17gb|AC010175.4| Homo sapiens 12 BAC RP11-118B22 (Roswell Park Can... 42 1.5
18dbj|AK103837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
19gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 ... 42 1.5
20ref|NM_001030824.1| Gallus gallus WW domain binding protein 4 (f... 40 5.8
21gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete... 40 5.8
22gb|AC125048.2| Mus musculus BAC clone RP23-364E18 from 5, comple... 40 5.8
23ref|XM_847720.1| PREDICTED: Canis familiaris similar to centrome... 40 5.8
24emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chr... 40 5.8
25emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chr... 40 5.8
26emb|AJ851443.1| Gallus gallus mRNA for hypothetical protein, clo... 40 5.8
27gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, compl... 40 5.8
28ref|XM_695439.1| PREDICTED: Danio rerio similar to thioredoxin-r... 40 5.8
29ref|XM_695402.1| PREDICTED: Danio rerio similar to thioredoxin-r... 40 5.8
30gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, com... 40 5.8
31gb|AC074138.5| Homo sapiens chromosome 19 clone CTD-3234P18, com... 40 5.8
32gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complet... 40 5.8
33emb|BX511158.5| Zebrafish DNA sequence from clone DKEY-28B4 in l... 40 5.8
34dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
35gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete s... 40 5.8
36ref|NM_001002113.1| Danio rerio zgc:86830 (zgc:86830), mRNA 40 5.8
37emb|AL672214.8| Mouse DNA sequence from clone RP23-161C9 on chro... 40 5.8
38dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
39dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
40emb|AL929019.4| Zebrafish DNA sequence from clone CH211-149L13, ... 40 5.8
41gb|BC071481.1| Danio rerio zgc:86830, mRNA (cDNA clone MGC:86830... 40 5.8
42gb|AE001439.1| Helicobacter pylori J99, complete genome 40 5.8
43emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, ... 40 5.8
44gb|AC142100.3| Mus musculus BAC clone RP24-366C18 from 18, compl... 40 5.8
45emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 ... 40 5.8 
>dbj|AK120981.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042B20, full
            insert sequence
          Length = 3625

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                        
Query: 324  ttggctcctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgt 383
            ||||||||||||||||||||| ||| || || |||||||| |||| |||||||  |||||
Sbjct: 3089 ttggctcctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgt 3030

                                                 
Query: 384  ttgctgggtccacatgctgctcaatggtaggaccaaa 420
            |||| || ||||| | |||||||||| ||||||||||
Sbjct: 3029 ttgcaggatccacgttctgctcaatgataggaccaaa 2993
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>dbj|AK105595.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-129-B02, full
            insert sequence
          Length = 2173

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                        
Query: 324  ttggctcctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgt 383
            ||||||||||||||||||||| ||| || || |||||||| |||| |||||||  |||||
Sbjct: 1637 ttggctcctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgt 1578

                                                 
Query: 384  ttgctgggtccacatgctgctcaatggtaggaccaaa 420
            |||| || ||||| | |||||||||| ||||||||||
Sbjct: 1577 ttgcaggatccacgttctgctcaatgataggaccaaa 1541
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>dbj|AK100704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114P05, full
            insert sequence
          Length = 3625

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                        
Query: 324  ttggctcctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgt 383
            ||||||||||||||||||||| ||| || || |||||||| |||| |||||||  |||||
Sbjct: 3089 ttggctcctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgt 3030

                                                 
Query: 384  ttgctgggtccacatgctgctcaatggtaggaccaaa 420
            |||| || ||||| | |||||||||| ||||||||||
Sbjct: 3029 ttgcaggatccacgttctgctcaatgataggaccaaa 2993
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                           
Query: 330     cctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgctg 389
               ||||||||||||||| ||| || || |||||||| |||| |||||||  ||||||||| |
Sbjct: 7478736 cctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgcag 7478795

                                              
Query: 390     ggtccacatgctgctcaatggtaggaccaaa 420
               | ||||| | |||||||||| ||||||||||
Sbjct: 7478796 gatccacgttctgctcaatgataggaccaaa 7478826
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>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0702F03
          Length = 141111

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                          
Query: 330    cctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgctg 389
              ||||||||||||||| ||| || || |||||||| |||| |||||||  ||||||||| |
Sbjct: 139764 cctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgcag 139823

                                             
Query: 390    ggtccacatgctgctcaatggtaggaccaaa 420
              | ||||| | |||||||||| ||||||||||
Sbjct: 139824 gatccacgttctgctcaatgataggaccaaa 139854
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>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0708G02
          Length = 168976

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                         
Query: 330   cctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgctg 389
             ||||||||||||||| ||| || || |||||||| |||| |||||||  ||||||||| |
Sbjct: 27528 cctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgcag 27587

                                            
Query: 390   ggtccacatgctgctcaatggtaggaccaaa 420
             | ||||| | |||||||||| ||||||||||
Sbjct: 27588 gatccacgttctgctcaatgataggaccaaa 27618
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>ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa8264 predicted mRNA
          Length = 2952

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Minus

                                                                        
Query: 331  ctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgctgg 390
            |||||||||||||| ||| || || |||||||| |||| |||||||  ||||||||| ||
Sbjct: 2952 ctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgcagg 2893

                                          
Query: 391  gtccacatgctgctcaatggtaggaccaaa 420
             ||||| | |||||||||| ||||||||||
Sbjct: 2892 atccacgttctgctcaatgataggaccaaa 2863
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>gb|AC016229.10| Homo sapiens chromosome 18, clone RP11-27G24, complete sequence
          Length = 149787

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 281   aaaaaaccctggaaaccaagcaaatg 306
             |||||||||||||||| |||||||||
Sbjct: 69735 aaaaaaccctggaaacaaagcaaatg 69760
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>ref|XM_473065.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2136

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 actcatcatcctctgacaaaa 284
           |||||||||||||||||||||
Sbjct: 561 actcatcatcctctgacaaaa 541
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>emb|AL356513.15| Human DNA sequence from clone RP11-108A15 on chromosome X Contains the
             3' end of a novel gene similar to Chic1 (LOC349423)and a
             selenophosphate synthetase (SPS) pseudogene, complete
             sequence
          Length = 180619

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 217   acatggatgaaccagaaacca 237
             |||||||||||||||||||||
Sbjct: 44477 acatggatgaaccagaaacca 44457
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>gb|AC023725.5| Drosophila melanogaster X BAC RP98-9I10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 165928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 105    cacacgcacacaaaattccaa 125
              |||||||||||||||||||||
Sbjct: 109827 cacacgcacacaaaattccaa 109847
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>gb|AC105352.2| Drosophila melanogaster X BAC RP98-45O17 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 172784

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 105    cacacgcacacaaaattccaa 125
              |||||||||||||||||||||
Sbjct: 144837 cacacgcacacaaaattccaa 144857
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>gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 181831

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 105    cacacgcacacaaaattccaa 125
              |||||||||||||||||||||
Sbjct: 159030 cacacgcacacaaaattccaa 159010
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>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence
          Length = 166104

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 191   ttcttcccatcccaccatcagccta 215
             ||||||||||||||||||| |||||
Sbjct: 79289 ttcttcccatcccaccatctgccta 79313
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>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence
          Length = 174210

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     cacacagacaatgttgacaac 57
              |||||||||||||||||||||
Sbjct: 137629 cacacagacaatgttgacaac 137609
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>gb|AC009533.10| Homo sapiens 12 BAC RP11-22B23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162572

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 187    cttcttcttcccatcccacca 207
              |||||||||||||||||||||
Sbjct: 123899 cttcttcttcccatcccacca 123879
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>gb|AC010175.4| Homo sapiens 12 BAC RP11-118B22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 127277

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    cttcttcttcccatcccacca 207
              |||||||||||||||||||||
Sbjct: 110895 cttcttcttcccatcccacca 110915
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>dbj|AK103837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148G19, full
           insert sequence
          Length = 2585

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 actcatcatcctctgacaaaa 284
           |||||||||||||||||||||
Sbjct: 655 actcatcatcctctgacaaaa 635
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>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete
              sequence
          Length = 326403

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 105    cacacgcacacaaaattccaa 125
              |||||||||||||||||||||
Sbjct: 319584 cacacgcacacaaaattccaa 319564
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>ref|NM_001030824.1| Gallus gallus WW domain binding protein 4 (formin binding protein 21)
            (WBP4), mRNA
          Length = 4867

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  gaagaagagcgtttttgttt 385
            ||||||||||||||||||||
Sbjct: 4091 gaagaagagcgtttttgttt 4110
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>gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete sequence
          Length = 138404

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   agacagatactccacaaagt 153
             ||||||||||||||||||||
Sbjct: 98671 agacagatactccacaaagt 98652
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>gb|AC125048.2| Mus musculus BAC clone RP23-364E18 from 5, complete sequence
          Length = 190505

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   cacacaaaattccaaaccaaaata 134
             |||||||||||| |||||||||||
Sbjct: 28219 cacacaaaattcaaaaccaaaata 28242
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>ref|XM_847720.1| PREDICTED: Canis familiaris similar to centromere protein F
            (350/400kD) (LOC610263), mRNA
          Length = 4350

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  agaaaccagcttcatggaca 249
            ||||||||||||||||||||
Sbjct: 2326 agaaaccagcttcatggaca 2345
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>emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chromosome X, complete
             sequence
          Length = 22695

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 281   aaaaaaccctggaaaccaagcaaatgcc 308
             ||||| |||||||||||||||| |||||
Sbjct: 15400 aaaaatccctggaaaccaagcagatgcc 15373
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>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the
             5' end of a novel gene, two novel genes, the Taok1 gene
             for TAO kinase 1, a eukaryotic translation initiation
             factor 2 subunit 1 alpha (Eif2s1) pseudogene, a ribosomal
             protein S2 (Rps2) pseudogene, the Cryba1 gene for
             crystallin beta A1 and two CpG islands, complete sequence
          Length = 220230

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    ataacaacacacacagacaa 47
             ||||||||||||||||||||
Sbjct: 65918 ataacaacacacacagacaa 65937
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>emb|AJ851443.1| Gallus gallus mRNA for hypothetical protein, clone 3a20
          Length = 4867

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  gaagaagagcgtttttgttt 385
            ||||||||||||||||||||
Sbjct: 4091 gaagaagagcgtttttgttt 4110
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>gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, complete sequence
          Length = 191499

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    ctgctatatgatttgatttg 181
              ||||||||||||||||||||
Sbjct: 187456 ctgctatatgatttgatttg 187437
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>ref|XM_695439.1| PREDICTED: Danio rerio similar to thioredoxin-related transmembrane
           protein 2 (LOC571810), mRNA
          Length = 2218

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 393 ccacatgctgctcaatggta 412
           ||||||||||||||||||||
Sbjct: 372 ccacatgctgctcaatggta 353
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>ref|XM_695402.1| PREDICTED: Danio rerio similar to thioredoxin-related transmembrane
           protein 2 (LOC571776), mRNA
          Length = 2218

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 393 ccacatgctgctcaatggta 412
           ||||||||||||||||||||
Sbjct: 372 ccacatgctgctcaatggta 353
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>gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, complete sequence
          Length = 165566

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    acaaaaaaccctggaaacca 298
              ||||||||||||||||||||
Sbjct: 115422 acaaaaaaccctggaaacca 115441
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>gb|AC074138.5| Homo sapiens chromosome 19 clone CTD-3234P18, complete sequence
          Length = 200418

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   acaaaaaaccctggaaacca 298
             ||||||||||||||||||||
Sbjct: 22691 acaaaaaaccctggaaacca 22710
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>gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complete sequence
          Length = 219476

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    cagcttcatggacacatgac 255
              ||||||||||||||||||||
Sbjct: 114792 cagcttcatggacacatgac 114773
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>emb|BX511158.5| Zebrafish DNA sequence from clone DKEY-28B4 in linkage group 1,
             complete sequence
          Length = 198706

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   ccacatgctgctcaatggta 412
             ||||||||||||||||||||
Sbjct: 16613 ccacatgctgctcaatggta 16632
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 111     cacacaaaattccaaaccaaaata 134
               ||||||||| ||||||||||||||
Sbjct: 5782574 cacacaaaaatccaaaccaaaata 5782551
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>gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete sequence
          Length = 178624

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    acaaaaaaccctggaaacca 298
              ||||||||||||||||||||
Sbjct: 120867 acaaaaaaccctggaaacca 120886
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>ref|NM_001002113.1| Danio rerio zgc:86830 (zgc:86830), mRNA
          Length = 2053

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 393 ccacatgctgctcaatggta 412
           ||||||||||||||||||||
Sbjct: 349 ccacatgctgctcaatggta 330
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>emb|AL672214.8| Mouse DNA sequence from clone RP23-161C9 on chromosome X, complete
             sequence
          Length = 47355

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   gctatatgatttgatttggc 183
             ||||||||||||||||||||
Sbjct: 15902 gctatatgatttgatttggc 15921
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>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0544H11
          Length = 178376

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 111   cacacaaaattccaaaccaaaata 134
             ||||||||| ||||||||||||||
Sbjct: 12376 cacacaaaaatccaaaccaaaata 12353
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>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1135_F06
          Length = 102230

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 111   cacacaaaattccaaaccaaaata 134
             ||||||||| ||||||||||||||
Sbjct: 72088 cacacaaaaatccaaaccaaaata 72065
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>emb|AL929019.4| Zebrafish DNA sequence from clone CH211-149L13, complete sequence
          Length = 149316

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   aataacaacacacacagaca 46
            ||||||||||||||||||||
Sbjct: 5092 aataacaacacacacagaca 5073
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>gb|BC071481.1| Danio rerio zgc:86830, mRNA (cDNA clone MGC:86830 IMAGE:6902138),
           complete cds
          Length = 2053

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 393 ccacatgctgctcaatggta 412
           ||||||||||||||||||||
Sbjct: 349 ccacatgctgctcaatggta 330
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    atggatgaaccagaaaccag 238
              ||||||||||||||||||||
Sbjct: 328902 atggatgaaccagaaaccag 328883
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>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence
          Length = 180436

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    ccaccatcagcctacacatg 221
              ||||||||||||||||||||
Sbjct: 107879 ccaccatcagcctacacatg 107898
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>gb|AC142100.3| Mus musculus BAC clone RP24-366C18 from 18, complete sequence
          Length = 175110

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    agaactcttccacacgcaca 114
             ||||||||||||||||||||
Sbjct: 82753 agaactcttccacacgcaca 82772
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>emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 in linkage group 9,
             complete sequence
          Length = 150766

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    aataacaacacacacagaca 46
             ||||||||||||||||||||
Sbjct: 94620 aataacaacacacacagaca 94639


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,436,503
Number of Sequences: 3902068
Number of extensions: 5436503
Number of successful extensions: 103161
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103045
Number of HSP's gapped (non-prelim): 116
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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