ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PFA3_GIBZE (Q4IA62) Palmitoyltransferase PFA3 (EC 2.3.1.-) (Prot... 32 0.36
2YSR4_CAEEL (Q09952) Hypothetical protein F59B10.4 31 0.81
3EXON_VZVD (P09253) Alkaline exonuclease (EC 3.1.11.-) 27 8.9
4ATKA_PSESM (Q883V6) Potassium-transporting ATPase A chain (EC 3.... 27 8.9

>PFA3_GIBZE (Q4IA62) Palmitoyltransferase PFA3 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 3)
          Length = 550

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 268 LFCILLYAVLVCWRWYEQSYRNQ*WGYEGSLLVLNFYIL 152
           LFC   +AV  CW WYE     +   Y  S L +NF +L
Sbjct: 164 LFCFWSFAVSACWVWYEALNDQE---YIDSFLPVNFIML 199



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>YSR4_CAEEL (Q09952) Hypothetical protein F59B10.4|
          Length = 267

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = -1

Query: 268 LFCILLYAVLVCWRWYEQSYRNQ*WGYEGSLLVLNFYILLMQGYQASSKVESVWLAAIIW 89
           LF ++LY +      Y  S+         +L ++NF ++L+     +SKV S+ L A++W
Sbjct: 55  LFAVMLYLI------YPDSF------LPSTLFIVNFSLVLLALLGINSKVSSMILPALVW 102

Query: 88  K 86
           K
Sbjct: 103 K 103



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>EXON_VZVD (P09253) Alkaline exonuclease (EC 3.1.11.-)|
          Length = 551

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 11  GANNPFPFQSKIDFGTTKSKANSLLFPDNSS*PYG 115
           G  NP P ++ I F   K +A  L  PD+ + P G
Sbjct: 271 GTLNPHPAETDISFFEIKCRAKYLFDPDDKNNPLG 305



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>ATKA_PSESM (Q883V6) Potassium-transporting ATPase A chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase A chain) (ATP
           phosphohydrolase [potassium-transporting] A chain)
           (Potassium-binding and translocating subunit A)
          Length = 564

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -1

Query: 178 LLVLNFYILLM-------QGYQASSKVESVWLAAIIWKQERVCFGFCGAEIDFRLERKW 23
           LL+L F +LL+       + +    + E  WL+ ++   ER C+   G  +D + E+ W
Sbjct: 7   LLILAFLVLLLAPAPWLGRFFYRVMEGERTWLSPVLGPVERACYLISG--VDPKTEQSW 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,734,503
Number of Sequences: 219361
Number of extensions: 1066574
Number of successful extensions: 2369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2369
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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