ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat ... 50 3e-06
2COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat prot... 47 2e-05
3COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat prot... 47 3e-05
4COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) ... 45 1e-04
5COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) ... 45 1e-04
6YDAM_ECOLI (P77302) Hypothetical protein ydaM 31 1.1
7YDAM_ECO57 (Q8X8Q3) Hypothetical protein ydaM 31 1.1
8NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chlo... 30 1.9
9NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chlo... 30 1.9
10NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chlo... 30 1.9
11NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chlo... 30 1.9
12NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chlo... 30 1.9
13NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chlo... 30 1.9
14SLS1_YEAST (P42900) Sigma-like sequence protein 1, mitochondrial... 30 3.2
15REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-) 29 4.2
16COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat ... 29 4.2
17NUGC_SOYBN (P31174) NAD(P)H-quinone oxidoreductase chain J, chlo... 29 4.2
18RPOB_EUGGR (P23579) DNA-directed RNA polymerase beta chain (EC 2... 28 7.2
19T2R46_PAPHA (Q646G0) Taste receptor type 2 member 46 (T2R46) 28 9.4

>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)|
            (Gamma-COP)
          Length = 870

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -1

Query: 430  VXSILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGIS-GPKEVAMKLAVRS 254
            +  ILG+ PCE +D V      HT  LSGVF G   VL + +  +      +AM + ++S
Sbjct: 797  ISEILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKS 856

Query: 253  DDPEVSDRI 227
            ++P V+D +
Sbjct: 857  NEPLVADLV 865



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>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2|
           COP)
          Length = 871

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 24/61 (39%), Positives = 36/61 (59%)
 Frame = -1

Query: 430 VXSILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEVAMKLAVRSD 251
           + + LGMQPCE +D V  N  SH+  L+G+F G   +LVR    ++    V M++ VRS 
Sbjct: 801 IITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALA--DGVTMQVTVRSK 858

Query: 250 D 248
           +
Sbjct: 859 E 859



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>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2|
           COP)
          Length = 871

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 24/61 (39%), Positives = 36/61 (59%)
 Frame = -1

Query: 430 VXSILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEVAMKLAVRSD 251
           + + LGMQPCE +D V  N  SH+  L+GV+ G   +LVR    ++    V M++ VRS 
Sbjct: 801 IITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALA--DGVTMQVTVRSK 858

Query: 250 D 248
           +
Sbjct: 859 E 859



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>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)|
          Length = 874

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = -1

Query: 430 VXSILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 311
           +   LGM PCE +D V +N  +HT LL+GVF G   +LVR
Sbjct: 804 IVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843



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>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)|
          Length = 874

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = -1

Query: 430 VXSILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 311
           +   LGM PCE +D V +N  +HT LL+GVF G   +LVR
Sbjct: 804 IVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843



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>YDAM_ECOLI (P77302) Hypothetical protein ydaM|
          Length = 430

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 431 CXKHPWHAALRGNRCCPKQFEIAHLP 354
           C KH W   + G R  P   EI+HLP
Sbjct: 192 CQKHTWEINMLGRRVMPIMHEISHLP 217



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>YDAM_ECO57 (Q8X8Q3) Hypothetical protein ydaM|
          Length = 430

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 431 CXKHPWHAALRGNRCCPKQFEIAHLP 354
           C KH W   + G R  P   EI+HLP
Sbjct: 192 CQKHTWEINMLGRRVMPIMHEISHLP 217



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>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98



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>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98



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>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98



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>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98



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>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98



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>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98



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>SLS1_YEAST (P42900) Sigma-like sequence protein 1, mitochondrial precursor|
           (Protein SLS1)
          Length = 643

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +3

Query: 207 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPM 338
           P  +IS  LS+T G S  +ASF ++ F PLI    ++K   LPM
Sbjct: 386 PSDSISQSLSITLGHSLQSASF-SSIFQPLIHKSFISKLLNLPM 428



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>REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)|
          Length = 757

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 207 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLEL 377
           PF T+S   SL + +S  T++   TS     P+   TKT + P +TP       L+L
Sbjct: 466 PFRTVSTSESLDTSTSTSTSTSATTS----APSAKSTKTASRPASTPTKSLTSSLDL 518



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>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)|
            (Gamma-COP)
          Length = 905

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -1

Query: 430  VXSILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKE-VAMKLAVRS 254
            V  +L MQP EGT+    +   H   LSG  +   KVL  +    S   E + +K+  R 
Sbjct: 833  VAELLQMQPLEGTE-NPTDKPVHVMKLSGKLVNGEKVLALVKMAHSKDGEGITIKVIARG 891

Query: 253  DDPEVSDRIHEIVANG 206
            +    SD   E+V  G
Sbjct: 892  E----SDSSVELVVGG 903



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>NUGC_SOYBN (P31174) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 158

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239
           G  + +V  L RL +GI  P+EV +K+ V   +P +
Sbjct: 62  GGLLASVYHLTRLEYGIDQPEEVCIKIFVARKNPRI 97



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>RPOB_EUGGR (P23579) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1082

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 219 ISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLE 374
           +S +L  T+  S+LT     + FGP   N   TK     +NT +  +VC +E
Sbjct: 365 LSQLLDDTNSLSELTHKRKLSPFGPNGLNKERTKLDVREINTSQYGRVCPIE 416



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>T2R46_PAPHA (Q646G0) Taste receptor type 2 member 46 (T2R46)|
          Length = 309

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 162 LAFHLVKAQGISINYSIWLCVSWFSRWNPTVVAASFL 52
           LAFH V+ +  S  Y++W+  + FS W  T ++  +L
Sbjct: 73  LAFHSVEVR--STAYNVWVVTNHFSNWLSTSLSMFYL 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,452,601
Number of Sequences: 219361
Number of extensions: 1001659
Number of successful extensions: 2294
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2294
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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