ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA 250 3e-63
2dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 250 3e-63
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
4dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
5dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
6gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence 196 4e-47
7gb|BT017505.1| Zea mays clone EL01N0414H09.c mRNA sequence 139 8e-30
8ref|NM_187618.1| Oryza sativa (japonica cultivar-group), predic... 129 8e-27
9dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 8e-27
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 107 3e-20
11gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
13gb|AY111369.1| Zea mays CL858_1 mRNA sequence 64 4e-07
14gb|AY389774.1| Hyacinthus orientalis coatomer protein gamma subu... 62 2e-06
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
18dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.5
19gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, com... 40 5.8
20gb|AY544051.1| Salmo salar clone Rsa473 microsatellite sequence 40 5.8
21gb|AC116324.6| Mus musculus BAC clone RP23-282P1 from 16, comple... 40 5.8
22gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Ho... 40 5.8
23emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 5.8
24emb|BX294445.10| Zebrafish DNA sequence from clone DKEY-265K11 i... 40 5.8
25gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, comp... 40 5.8
26emb|BX323992.9| Zebrafish DNA sequence from clone DKEY-185B14 in... 40 5.8
27gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, comp... 40 5.8
28gb|DQ067593.1| Cocksfoot streak virus isolate UK-1-04 GHCP619C H... 40 5.8
29gb|DQ067592.1| Cocksfoot streak virus isolate UK-1-04 GHCP619B H... 40 5.8
30gb|DQ067591.1| Cocksfoot streak virus isolate UK-1-04 GHCP619A H... 40 5.8
31dbj|AK031002.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 5.8
32emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on ch... 40 5.8
33emb|BX248130.8| Zebrafish DNA sequence from clone CH211-236E5 in... 40 5.8
34gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complet... 40 5.8
35gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F... 40 5.8
36gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O... 40 5.8
37emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 i... 40 5.8
38emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, ... 40 5.8
39emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 i... 40 5.8
40emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chr... 40 5.8
41emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in... 40 5.8
42emb|AL935150.10| Mouse DNA sequence from clone RP24-482A24 on ch... 40 5.8
43emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chrom... 40 5.8 
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score =  250 bits (126), Expect = 3e-63
 Identities = 198/222 (89%)
 Strand = Plus / Minus

                                                                        
Query: 202  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 261
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841

                                                                        
Query: 262  cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 321
            | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781

                                                                        
Query: 322  ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 381
            |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || 
Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 2721

                                                      
Query: 382  ggacaacatcggttccctcgcaaggctgcatgccaaggatgc 423
            |||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 2720 ggaccacatcagttccctcgcagggctgcatgccaaggatgc 2679



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 11   tgtggttccaaatcaaccaaaaattgtt 38
            |||||||||||||||| |||||||||||
Sbjct: 3098 tgtggttccaaatcaatcaaaaattgtt 3071
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>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
            insert sequence
          Length = 3193

 Score =  250 bits (126), Expect = 3e-63
 Identities = 198/222 (89%)
 Strand = Plus / Minus

                                                                        
Query: 202  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 261
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841

                                                                        
Query: 262  cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 321
            | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781

                                                                        
Query: 322  ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 381
            |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || 
Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 2721

                                                      
Query: 382  ggacaacatcggttccctcgcaaggctgcatgccaaggatgc 423
            |||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 2720 ggaccacatcagttccctcgcagggctgcatgccaaggatgc 2679



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 11   tgtggttccaaatcaaccaaaaattgtt 38
            |||||||||||||||| |||||||||||
Sbjct: 3098 tgtggttccaaatcaatcaaaaattgtt 3071
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  210 bits (106), Expect = 3e-51
 Identities = 175/198 (88%)
 Strand = Plus / Minus

                                                                           
Query: 202     tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 261
               |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 5491408 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 5491349

                                                                           
Query: 262     cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 321
               | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 5491348 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 5491289

                                                                           
Query: 322     ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 381
               |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || 
Sbjct: 5491288 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 5491229

                                 
Query: 382     ggacaacatcggttccct 399
               |||| ||||| |||||||
Sbjct: 5491228 ggaccacatcagttccct 5491211



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 11      tgtggttccaaatcaaccaaaaattgtt 38
               |||||||||||||||| |||||||||||
Sbjct: 5491606 tgtggttccaaatcaatcaaaaattgtt 5491579



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 397     cctcgcaaggctgcatgccaaggatgc 423
               ||||||| |||||||||||||||||||
Sbjct: 5490995 cctcgcagggctgcatgccaaggatgc 5490969
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>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0081K20
          Length = 117287

 Score =  210 bits (106), Expect = 3e-51
 Identities = 175/198 (88%)
 Strand = Plus / Minus

                                                                        
Query: 202  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 261
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 4493 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 4434

                                                                        
Query: 262  cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 321
            | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 4433 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 4374

                                                                        
Query: 322  ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 381
            |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || 
Sbjct: 4373 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 4314

                              
Query: 382  ggacaacatcggttccct 399
            |||| ||||| |||||||
Sbjct: 4313 ggaccacatcagttccct 4296



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 11   tgtggttccaaatcaaccaaaaattgtt 38
            |||||||||||||||| |||||||||||
Sbjct: 4691 tgtggttccaaatcaatcaaaaattgtt 4664



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 397  cctcgcaaggctgcatgccaaggatgc 423
            ||||||| |||||||||||||||||||
Sbjct: 4080 cctcgcagggctgcatgccaaggatgc 4054
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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score =  210 bits (106), Expect = 3e-51
 Identities = 175/198 (88%)
 Strand = Plus / Minus

                                                                          
Query: 202    tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 261
              |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 125389 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 125330

                                                                          
Query: 262    cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 321
              | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 125329 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 125270

                                                                          
Query: 322    ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 381
              |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || 
Sbjct: 125269 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 125210

                                
Query: 382    ggacaacatcggttccct 399
              |||| ||||| |||||||
Sbjct: 125209 ggaccacatcagttccct 125192



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 11     tgtggttccaaatcaaccaaaaattgtt 38
              |||||||||||||||| |||||||||||
Sbjct: 125587 tgtggttccaaatcaatcaaaaattgtt 125560



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 397    cctcgcaaggctgcatgccaaggatgc 423
              ||||||| |||||||||||||||||||
Sbjct: 124976 cctcgcagggctgcatgccaaggatgc 124950
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>gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence
          Length = 1125

 Score =  196 bits (99), Expect = 4e-47
 Identities = 195/227 (85%)
 Strand = Plus / Minus

                                                                       
Query: 200 gttttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatct 259
           |||||||||||| || |||||||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 960 gttttagccattagcgacaatttcgtggatcctgtcactgatctctggatcatcagatct 901

                                                                       
Query: 260 gacagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaa 319
            || || |||||||||||||| || |||||  | || ||||||||||| |||||||||||
Sbjct: 900 aactgccagcttcatggccacctccttcggtgcactaattccaaatgacagtctcaccaa 841

                                                                       
Query: 320 aactttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtt 379
            |||||||| || || || |||||||| || ||||| ||||||||||| || |||||| |
Sbjct: 840 gactttcacgttgccaataaacacaccagagagcagacaagtgtgcgaccttgaattgct 781

                                                          
Query: 380 ttggacaacatcggttccctcgcaaggctgcatgccaaggatgctta 426
           | |||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 780 tgggaccacgtcagttccctcacaaggctgcatgccaaggatgctta 734
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>gb|BT017505.1| Zea mays clone EL01N0414H09.c mRNA sequence
          Length = 886

 Score =  139 bits (70), Expect = 8e-30
 Identities = 175/210 (83%)
 Strand = Plus / Minus

                                                                       
Query: 217 caatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatgg 276
           ||||||| |||||| ||||||||| ||| |||||||| ||||| || || || |||||||
Sbjct: 679 caatttcgtggatcttgtcactgagctctggatcatcagatctaactgccaggttcatgg 620

                                                                       
Query: 277 ccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacattaccga 336
           |||| || |||||  | ||||||||||| || ||||||||||| |||||||| || || |
Sbjct: 619 ccacctccttcggggcactgattccaaaggaaagtctcaccaagactttcacgttgccaa 560

                                                                       
Query: 337 tgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcggttc 396
           | | ||| || || ||||| ||||||||||| || |||||| || |||| || || || |
Sbjct: 559 taaccaccccagagagcagacaagtgtgcgaccttgaattgcttgggaccacgtcagtcc 500

                                         
Query: 397 cctcgcaaggctgcatgccaaggatgctta 426
           |||| |||||||||||||||||||||||||
Sbjct: 499 cctcacaaggctgcatgccaaggatgctta 470
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>ref|NM_187618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2481

 Score =  129 bits (65), Expect = 8e-27
 Identities = 173/209 (82%)
 Strand = Plus / Minus

                                                                        
Query: 213  gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 272
            |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 2471 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2412

                                                                        
Query: 273  atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 332
            || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 2411 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2352

                                                                        
Query: 333  ccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcg 392
            |||||||||||||| || |||||||||||||||||||| | ||| ||| | ||||| || 
Sbjct: 2351 ccgatgaacacaccagacagcaggcaagtgtgcgatcttgcattctttggtacaacctca 2292

                                         
Query: 393  gttccctcgcaaggctgcatgccaaggat 421
            || ||||| ||||||||||| ||||||||
Sbjct: 2291 gtgccctcacaaggctgcataccaaggat 2263
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>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full
            insert sequence
          Length = 3214

 Score =  129 bits (65), Expect = 8e-27
 Identities = 173/209 (82%)
 Strand = Plus / Minus

                                                                        
Query: 213  gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 272
            |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 2825 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2766

                                                                        
Query: 273  atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 332
            || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 2765 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2706

                                                                        
Query: 333  ccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcg 392
            |||||||||||||| || |||||||||||||||||||| | ||| ||| | ||||| || 
Sbjct: 2705 ccgatgaacacaccagacagcaggcaagtgtgcgatcttgcattctttggtacaacctca 2646

                                         
Query: 393  gttccctcgcaaggctgcatgccaaggat 421
            || ||||| ||||||||||| ||||||||
Sbjct: 2645 gtgccctcacaaggctgcataccaaggat 2617
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                           
Query: 213     gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 272
               |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 6651732 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6651673

                                                                           
Query: 273     atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 332
               || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 6651672 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6651613

                                                     
Query: 333     ccgatgaacacacctgaaagcaggcaagtgtgcgatct 370
               |||||||||||||| || ||||||||||||||||||||
Sbjct: 6651612 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6651575
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>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
             complete sequence
          Length = 127946

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                         
Query: 213   gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 272
             |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 37280 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 37221

                                                                         
Query: 273   atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 332
             || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 37220 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 37161

                                                   
Query: 333   ccgatgaacacacctgaaagcaggcaagtgtgcgatct 370
             |||||||||||||| || ||||||||||||||||||||
Sbjct: 37160 ccgatgaacacaccagacagcaggcaagtgtgcgatct 37123
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                           
Query: 213     gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 272
               |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 6650945 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6650886

                                                                           
Query: 273     atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 332
               || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 6650885 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6650826

                                                     
Query: 333     ccgatgaacacacctgaaagcaggcaagtgtgcgatct 370
               |||||||||||||| || ||||||||||||||||||||
Sbjct: 6650825 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6650788
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>gb|AY111369.1| Zea mays CL858_1 mRNA sequence
          Length = 1437

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 216  acaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatg 275
            ||||| ||||| ||| | |||||||| || || ||||||||||| |||||||  ||||| 
Sbjct: 1194 acaatctcatgaatcttatcactgacttcagggtcatctgatctcacagctaatttcatt 1135

                                            
Query: 276  gccacttctttcggcccgctgattccaaatga 307
            |||||||| || |||||||| | |||||||||
Sbjct: 1134 gccacttcgttgggcccgctcagtccaaatga 1103
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>gb|AY389774.1| Hyacinthus orientalis coatomer protein gamma subunit mRNA, partial
           cds
          Length = 871

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 384 acaacatcggttccctcgcaaggctgcatgccaaggatg 422
           ||||| || ||||||||||||||||||||||||||||||
Sbjct: 736 acaacttcagttccctcgcaaggctgcatgccaaggatg 698
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 152      tggaaagccaaaacaacaaaa 172
                |||||||||||||||||||||
Sbjct: 21750132 tggaaagccaaaacaacaaaa 21750112
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>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0429B05
          Length = 155024

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 152   tggaaagccaaaacaacaaaa 172
             |||||||||||||||||||||
Sbjct: 29715 tggaaagccaaaacaacaaaa 29695
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>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0479C12
          Length = 136799

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 152    tggaaagccaaaacaacaaaa 172
              |||||||||||||||||||||
Sbjct: 117702 tggaaagccaaaacaacaaaa 117682
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>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144,
             complete sequence
          Length = 135217

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 161   aaaacaacaaaaaggtcaaccaaaa 185
             |||||||||||||||||||| ||||
Sbjct: 66692 aaaacaacaaaaaggtcaacaaaaa 66716
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>gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, complete sequence
          Length = 198469

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    caaatgatagtctcaccaaa 320
              ||||||||||||||||||||
Sbjct: 134144 caaatgatagtctcaccaaa 134163
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>gb|AY544051.1| Salmo salar clone Rsa473 microsatellite sequence
          Length = 1015

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 396 ccctcgcaaggctgcatgcc 415
           ||||||||||||||||||||
Sbjct: 252 ccctcgcaaggctgcatgcc 271
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>gb|AC116324.6| Mus musculus BAC clone RP23-282P1 from 16, complete sequence
          Length = 200774

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    gtctcaccaaaactttcaca 329
              ||||||||||||||||||||
Sbjct: 141172 gtctcaccaaaactttcaca 141153
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>gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 217690

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   aaaacaacaaaaaggtcaac 180
             ||||||||||||||||||||
Sbjct: 30996 aaaacaacaaaaaggtcaac 31015
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>emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 2/10
          Length = 313050

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 156 aagccaaaacaacaaaaagg 175
           ||||||||||||||||||||
Sbjct: 565 aagccaaaacaacaaaaagg 584
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>emb|BX294445.10| Zebrafish DNA sequence from clone DKEY-265K11 in linkage group 1,
             complete sequence
          Length = 159780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   acacacctgaaagcaggcaa 359
             ||||||||||||||||||||
Sbjct: 98857 acacacctgaaagcaggcaa 98876
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>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence
          Length = 181253

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 151    atggaaagccaaaacaacaaaaaggtcaaccaaaaa 186
              ||||||||| |||| || |||||||||||| |||||
Sbjct: 156807 atggaaagcaaaaaaaaaaaaaaggtcaactaaaaa 156842
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>emb|BX323992.9| Zebrafish DNA sequence from clone DKEY-185B14 in linkage group 12,
             complete sequence
          Length = 153572

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    caaatcaaccaaaaattgtt 38
             ||||||||||||||||||||
Sbjct: 48507 caaatcaaccaaaaattgtt 48488
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>gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, complete sequence
          Length = 159145

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     caaccaaaaattgttttact 43
              ||||||||||||||||||||
Sbjct: 143015 caaccaaaaattgttttact 143034
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>gb|DQ067593.1| Cocksfoot streak virus isolate UK-1-04 GHCP619C HC-Pro protein
            (HC-Pro) gene, partial cds
          Length = 1371

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 364  gcgatctcgaattgttttgg 383
            ||||||||||||||||||||
Sbjct: 1110 gcgatctcgaattgttttgg 1091
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>gb|DQ067592.1| Cocksfoot streak virus isolate UK-1-04 GHCP619B HC-Pro protein
            (HC-Pro) gene, partial cds
          Length = 1371

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 364  gcgatctcgaattgttttgg 383
            ||||||||||||||||||||
Sbjct: 1110 gcgatctcgaattgttttgg 1091
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>gb|DQ067591.1| Cocksfoot streak virus isolate UK-1-04 GHCP619A HC-Pro protein
            (HC-Pro) gene, partial cds
          Length = 1371

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 364  gcgatctcgaattgttttgg 383
            ||||||||||||||||||||
Sbjct: 1110 gcgatctcgaattgttttgg 1091
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>dbj|AK031002.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830485N12 product:similar to Protein
           C20orf24 (Rab5-interacting protein) (RIP5) (PNAS-11)
           [Homo sapiens], full insert sequence
          Length = 2005

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 159 ccaaaacaacaaaaaggtca 178
           ||||||||||||||||||||
Sbjct: 906 ccaaaacaacaaaaaggtca 887
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>emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete
             sequence
          Length = 174226

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    agaaaaccaacttacacata 107
             ||||||||||||||||||||
Sbjct: 14949 agaaaaccaacttacacata 14968
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>emb|BX248130.8| Zebrafish DNA sequence from clone CH211-236E5 in linkage group 1,
              complete sequence
          Length = 183058

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    acacacctgaaagcaggcaa 359
              ||||||||||||||||||||
Sbjct: 145464 acacacctgaaagcaggcaa 145483
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>gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complete sequence
          Length = 150646

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   aacaacaaaaaggtcaacca 182
             ||||||||||||||||||||
Sbjct: 44400 aacaacaaaaaggtcaacca 44419
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>gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F18, complete sequence
          Length = 110085

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    caaccaaaaattgttttact 43
             ||||||||||||||||||||
Sbjct: 74126 caaccaaaaattgttttact 74107
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>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence
          Length = 141894

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    caaccaaaaattgttttact 43
             ||||||||||||||||||||
Sbjct: 98121 caaccaaaaattgttttact 98102
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>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12,
              complete sequence
          Length = 177468

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     caaatcaaccaaaaattgtt 38
              ||||||||||||||||||||
Sbjct: 107923 caaatcaaccaaaaattgtt 107942
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>emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, complete sequence
          Length = 164218

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    ataattaatcgaaatccctt 137
              ||||||||||||||||||||
Sbjct: 160378 ataattaatcgaaatccctt 160359
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>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6,
             complete sequence
          Length = 181060

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   aaaacaacaaaaaggtcaac 180
             ||||||||||||||||||||
Sbjct: 24478 aaaacaacaaaaaggtcaac 24459
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>emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chromosome X, complete
              sequence
          Length = 125394

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     caagaatgatgctgcaacaa 71
              ||||||||||||||||||||
Sbjct: 115520 caagaatgatgctgcaacaa 115539
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>emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in linkage group 6,
             complete sequence
          Length = 170067

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   aaaacaacaaaaaggtcaac 180
             ||||||||||||||||||||
Sbjct: 11246 aaaacaacaaaaaggtcaac 11265
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>emb|AL935150.10| Mouse DNA sequence from clone RP24-482A24 on chromosome 2, complete
             sequence
          Length = 163240

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   ccaaaacaacaaaaaggtca 178
             ||||||||||||||||||||
Sbjct: 91724 ccaaaacaacaaaaaggtca 91705
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>emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chromosome 2, complete
             sequence
          Length = 217609

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    caagaatgatgctgcaacaa 71
             ||||||||||||||||||||
Sbjct: 48422 caagaatgatgctgcaacaa 48441


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,630,080
Number of Sequences: 3902068
Number of extensions: 4630080
Number of successful extensions: 89763
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89550
Number of HSP's gapped (non-prelim): 213
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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