ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl44a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 176 4e-41
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
4dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
5dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
6gb|AY103740.1| Zea mays PCO120652 mRNA sequence 153 5e-34
7gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence 113 5e-22
8gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 101 2e-18
9gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 101 2e-18
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
11dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
12dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
13dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
14dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
15gb|AY109245.1| Zea mays PCO147899 mRNA sequence 101 2e-18
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 101 2e-18
17ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490... 50 0.006
18emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BA... 50 0.006
19emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, ... 50 0.006
20ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480... 44 0.36
21gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomi... 44 0.36
22emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N... 44 0.36
23dbj|AK221668.1| Arabidopsis thaliana mRNA for putative protein, ... 44 0.36
24gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 1... 42 1.4
25gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cance... 42 1.4
26gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence 42 1.4
27gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, co... 42 1.4
28gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, comple... 42 1.4
29gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, co... 42 1.4
30gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, co... 42 1.4
31gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, compl... 40 5.7
32gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
33gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
34gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome... 40 5.7
35ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM033... 40 5.7
36emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in... 40 5.7
37gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating... 40 5.7
38ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.7
39emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chr... 40 5.7
40emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 i... 40 5.7
41gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, com... 40 5.7
42gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, compl... 40 5.7
43gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, compl... 40 5.7
44ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA 40 5.7
45gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone... 40 5.7
46dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
47gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete... 40 5.7
48gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, comple... 40 5.7
49gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete ... 40 5.7
50emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chro... 40 5.7
51emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, co... 40 5.7
52dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 5.7
53dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:C... 40 5.7
54emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-8... 40 5.7
55dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 5.7 
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  176 bits (89), Expect = 4e-41
 Identities = 107/113 (94%)
 Strand = Plus / Minus

                                                                        
Query: 311  ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 370
            ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 3111 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 3052

                                                                 
Query: 371  ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttct 423
            ||||||||||||||||||||||||||| ||||||||||||||||  |||||||
Sbjct: 3051 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttct 2999
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  176 bits (89), Expect = 4e-41
 Identities = 107/113 (94%)
 Strand = Plus / Plus

                                                                            
Query: 311      ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 370
                ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 10020837 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 10020896

                                                                     
Query: 371      ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttct 423
                ||||||||||||||||||||||||||| ||||||||||||||||  |||||||
Sbjct: 10020897 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttct 10020949
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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  176 bits (89), Expect = 4e-41
 Identities = 107/113 (94%)
 Strand = Plus / Plus

                                                                          
Query: 311    ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 370
              ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 101119 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 101178

                                                                   
Query: 371    ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttct 423
              ||||||||||||||||||||||||||| ||||||||||||||||  |||||||
Sbjct: 101179 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttct 101231
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>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0021A04
          Length = 50487

 Score =  176 bits (89), Expect = 4e-41
 Identities = 107/113 (94%)
 Strand = Plus / Plus

                                                                         
Query: 311   ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 370
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 48394 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 48453

                                                                  
Query: 371   ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttct 423
             ||||||||||||||||||||||||||| ||||||||||||||||  |||||||
Sbjct: 48454 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttct 48506
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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  176 bits (89), Expect = 4e-41
 Identities = 107/113 (94%)
 Strand = Plus / Plus

                                                                          
Query: 311    ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 370
              ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 115330 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 115389

                                                                   
Query: 371    ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttct 423
              ||||||||||||||||||||||||||| ||||||||||||||||  |||||||
Sbjct: 115390 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttct 115442
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>gb|AY103740.1| Zea mays PCO120652 mRNA sequence
          Length = 1013

 Score =  153 bits (77), Expect = 5e-34
 Identities = 104/113 (92%)
 Strand = Plus / Minus

                                                                       
Query: 311 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 370
           ||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct: 631 ttaactgccacccttctgcttgagagtaatcttgtcacctaagctgagtgcaattccctg 572

                                                                
Query: 371 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttct 423
           ||||||||||||||||| ||||||||| |||||||||||||||  ||||||||
Sbjct: 571 ggtcttgctccttattcggatgtaaccactgagcttgccatcatgttgcttct 519
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>gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence
          Length = 1032

 Score =  113 bits (57), Expect = 5e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 311 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 370
           ||||||||| || ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 638 ttaactgccacctttctgcttgagagtgatcttgtcccctaagctgagtgcaattccctg 579

                                                                
Query: 371 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttct 423
           |||||||||||||||||  ||||| || ||||||||||| |||  ||||||||
Sbjct: 578 ggtcttgctccttattcgaatgtagccactgagcttgccgtcatgttgcttct 526
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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                         
Query: 315   ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 374
             |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 16550 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 16609

                                                            
Query: 375   ttgctccttattctgatgtaaccgctgagcttgccatcaacttgctt 421
             || |||| ||||||||| || || || |||||||||||  |||||||
Sbjct: 16610 ttactccgtattctgatatagccactcagcttgccatcggcttgctt 16656
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>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                          
Query: 315    ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 374
              |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 166015 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 166074

                                                             
Query: 375    ttgctccttattctgatgtaaccgctgagcttgccatcaacttgctt 421
              || |||| ||||||||| || || || |||||||||||  |||||||
Sbjct: 166075 ttactccgtattctgatatagccactcagcttgccatcggcttgctt 166121
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                           
Query: 315     ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 374
               |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 3648878 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3648937

                                                              
Query: 375     ttgctccttattctgatgtaaccgctgagcttgccatcaacttgctt 421
               || |||| ||||||||| || || || |||||||||||  |||||||
Sbjct: 3648938 ttactccgtattctgatatagccactcagcttgccatcggcttgctt 3648984
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>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
            insert sequence
          Length = 3332

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Minus

                                                                        
Query: 315  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 374
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909

                                                           
Query: 375  ttgctccttattctgatgtaaccgctgagcttgccatcaacttgctt 421
            || |||| ||||||||| || || || |||||||||||  |||||||
Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgctt 2862
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>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
            insert sequence
          Length = 3332

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Minus

                                                                        
Query: 315  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 374
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909

                                                           
Query: 375  ttgctccttattctgatgtaaccgctgagcttgccatcaacttgctt 421
            || |||| ||||||||| || || || |||||||||||  |||||||
Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgctt 2862
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>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
            insert sequence
          Length = 3363

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Minus

                                                                        
Query: 315  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 374
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2999 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2940

                                                           
Query: 375  ttgctccttattctgatgtaaccgctgagcttgccatcaacttgctt 421
            || |||| ||||||||| || || || |||||||||||  |||||||
Sbjct: 2939 ttactccgtattctgatatagccactcagcttgccatcggcttgctt 2893
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>dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F11, full
            insert sequence
          Length = 1741

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Minus

                                                                        
Query: 315  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 374
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 1377 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 1318

                                                           
Query: 375  ttgctccttattctgatgtaaccgctgagcttgccatcaacttgctt 421
            || |||| ||||||||| || || || |||||||||||  |||||||
Sbjct: 1317 ttactccgtattctgatatagccactcagcttgccatcggcttgctt 1271
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>gb|AY109245.1| Zea mays PCO147899 mRNA sequence
          Length = 751

 Score =  101 bits (51), Expect = 2e-18
 Identities = 72/79 (91%)
 Strand = Plus / Minus

                                                                       
Query: 316 tgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtct 375
           ||||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 711 tgcctcccttctgttttagggtgatcttgtctcctaagctgagcgcaattccttgggtct 652

                              
Query: 376 tgctccttattctgatgta 394
           |||| ||||| ||||||||
Sbjct: 651 tgcttcttatcctgatgta 633
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                           
Query: 315     ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 374
               |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 3657572 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3657631

                                                              
Query: 375     ttgctccttattctgatgtaaccgctgagcttgccatcaacttgctt 421
               || |||| ||||||||| || || || |||||||||||  |||||||
Sbjct: 3657632 ttactccgtattctgatatagccactcagcttgccatcggcttgctt 3657678
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>ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490 mRNA, complete cds
          Length = 3306

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 321  cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 380
            ||||| || |||||||| || |||||||| |  || || ||||| ||||| |||||||||
Sbjct: 2955 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 2896

                             
Query: 381  cttattctgatgtaacc 397
            ||||| || ||||||||
Sbjct: 2895 cttatccttatgtaacc 2879
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>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project)
          Length = 94319

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                         
Query: 321   cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 380
             ||||| || |||||||| || |||||||| |  || || ||||| ||||| |||||||||
Sbjct: 50562 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 50503

                              
Query: 381   cttattctgatgtaacc 397
             ||||| || ||||||||
Sbjct: 50502 cttatccttatgtaacc 50486



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 360   gcaattccttgggtcttgctccttattctgatgtaacc 397
             ||||| ||||| |||||||||||||| || ||||||||
Sbjct: 45214 gcaatcccttgcgtcttgctccttatccttatgtaacc 45177
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>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75
          Length = 196242

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                         
Query: 321   cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 380
             ||||| || |||||||| || |||||||| |  || || ||||| ||||| |||||||||
Sbjct: 38627 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 38568

                              
Query: 381   cttattctgatgtaacc 397
             ||||| || ||||||||
Sbjct: 38567 cttatccttatgtaacc 38551



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 360   gcaattccttgggtcttgctccttattctgatgtaacc 397
             ||||| ||||| |||||||||||||| || ||||||||
Sbjct: 33279 gcaatcccttgcgtcttgctccttatccttatgtaacc 33242
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>ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480 mRNA, complete cds
          Length = 3296

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 360  gcaattccttgggtcttgctccttattctgatgtaacc 397
            ||||| ||||| |||||||||||||| || ||||||||
Sbjct: 2867 gcaatcccttgcgtcttgctccttatccttatgtaacc 2830
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>gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomic sequence, complete
             sequence
          Length = 91755

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 276   ctacatgacacaattgcaacagattg 301
             |||||||| |||||||||||||||||
Sbjct: 20673 ctacatgagacaattgcaacagattg 20648
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>emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N9 on chromosome 6q13-15 Contains
              the SNAP91 gene for synaptosomal-associated protein, 91 kD
              homolog (mouse) (KIAA0656) and a CpG island, complete
              sequence
          Length = 167018

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 202    aatcttttgtacattataaaaa 223
              ||||||||||||||||||||||
Sbjct: 106168 aatcttttgtacattataaaaa 106189
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>dbj|AK221668.1| Arabidopsis thaliana mRNA for putative protein, complete cds,
           clone: RAFL09-97-P16
          Length = 1212

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 360 gcaattccttgggtcttgctccttattctgatgtaacc 397
           ||||| ||||| |||||||||||||| || ||||||||
Sbjct: 822 gcaatcccttgcgtcttgctccttatccttatgtaacc 785
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>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the
            complete genome
          Length = 11901

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 65   gttttttgtcaaaaaaggcct 85
            |||||||||||||||||||||
Sbjct: 4932 gttttttgtcaaaaaaggcct 4912
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>gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 51315

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   tcttctcatccctctctttaa 203
             |||||||||||||||||||||
Sbjct: 29023 tcttctcatccctctctttaa 29043
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>gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence
          Length = 39112

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 6    cgaaatacagtatctcaatcc 26
            |||||||||||||||||||||
Sbjct: 5828 cgaaatacagtatctcaatcc 5808
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>gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, complete sequence
          Length = 101116

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 177   tcttcctcttctcatccctct 197
             |||||||||||||||||||||
Sbjct: 82774 tcttcctcttctcatccctct 82794
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>gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, complete sequence
          Length = 169579

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   cctcttctcatccctctcttt 201
             |||||||||||||||||||||
Sbjct: 41686 cctcttctcatccctctcttt 41706
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>gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, complete sequence
          Length = 170801

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 177  tcttcctcttctcatccctct 197
            |||||||||||||||||||||
Sbjct: 7996 tcttcctcttctcatccctct 8016
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>gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, complete sequence
          Length = 204424

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 280   atgacacaattgcaacagatt 300
             |||||||||||||||||||||
Sbjct: 73824 atgacacaattgcaacagatt 73844
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>gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, complete cds
          Length = 987

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  atggaagggagttgggagag 109
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117
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>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09,
              complete sequence
          Length = 167318

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    atcttttgtacattataaaa 222
              ||||||||||||||||||||
Sbjct: 157323 atcttttgtacattataaaa 157304
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>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12,
             complete sequence
          Length = 121293

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   atcttttgtacattataaaa 222
             ||||||||||||||||||||
Sbjct: 28118 atcttttgtacattataaaa 28099
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>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence
          Length = 209579

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   tcttcctcttctcatccctc 196
             ||||||||||||||||||||
Sbjct: 64584 tcttcctcttctcatccctc 64565
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>ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM03361.1) partial mRNA
          Length = 2949

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 336  gtaatcttgtctcccaagctgagtgcaattccttgggtcttgct 379
            |||||||||||||||||||| |  || || || |||||||||||
Sbjct: 2918 gtaatcttgtctcccaagctcaaggcgatcccctgggtcttgct 2875
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>emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in linkage group 5, complete
              sequence
          Length = 135495

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    gtacattataaaaacatctt 229
              ||||||||||||||||||||
Sbjct: 118337 gtacattataaaaacatctt 118318
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>gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating gene, mRNA (cDNA
            clone MGC:52826 IMAGE:4884583), complete cds
          Length = 3336

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  ttttgtacattataaaaaca 225
            ||||||||||||||||||||
Sbjct: 3216 ttttgtacattataaaaaca 3235
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>ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000048.02.0)
           partial mRNA
          Length = 1161

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 202 aatcttttgtacattataaaaaca 225
           |||||||||||||||| |||||||
Sbjct: 324 aatcttttgtacattagaaaaaca 347
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>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains
            the RPL21P2 gene for ribosomal protein L21 pseudogene 2
            and a novel gene, complete sequence
          Length = 72540

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  tgtctcccaagctgagtgca 362
            ||||||||||||||||||||
Sbjct: 6689 tgtctcccaagctgagtgca 6670
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>emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 in linkage group 10,
            complete sequence
          Length = 167771

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   atggaagggagttgggagag 109
            ||||||||||||||||||||
Sbjct: 2324 atggaagggagttgggagag 2343
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>gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, complete sequence
          Length = 170255

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 404   cttgccatcaacttgcttct 423
             ||||||||||||||||||||
Sbjct: 75604 cttgccatcaacttgcttct 75623
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>gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, complete sequence
          Length = 194729

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     tcacatctattcttacacca 62
              ||||||||||||||||||||
Sbjct: 114772 tcacatctattcttacacca 114791
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>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence
          Length = 168843

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   cccttctgcttgagggtaat 340
             ||||||||||||||||||||
Sbjct: 29210 cccttctgcttgagggtaat 29229
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>ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  atggaagggagttgggagag 109
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117
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>gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone MGC:110381
           IMAGE:7410517), complete cds
          Length = 968

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  atggaagggagttgggagag 109
           ||||||||||||||||||||
Sbjct: 81  atggaagggagttgggagag 100
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 203      atcttttgtacattataaaa 222
                ||||||||||||||||||||
Sbjct: 17897369 atcttttgtacattataaaa 17897350
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>gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete sequence
          Length = 164051

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    tcttcctcttctcatccctc 196
              ||||||||||||||||||||
Sbjct: 129969 tcttcctcttctcatccctc 129950
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>gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, complete sequence
          Length = 110512

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    acaaacttcacatctattct 55
             ||||||||||||||||||||
Sbjct: 22462 acaaacttcacatctattct 22481
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>gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete sequence
          Length = 89352

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   ctcccttctgcttgagggta 338
             ||||||||||||||||||||
Sbjct: 72452 ctcccttctgcttgagggta 72433
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>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete
            sequence
          Length = 97756

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  aatcttttgtacattataaa 221
            ||||||||||||||||||||
Sbjct: 6181 aatcttttgtacattataaa 6162
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>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence
          Length = 240928

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   gtacattataaaaacatctt 229
             ||||||||||||||||||||
Sbjct: 72225 gtacattataaaaacatctt 72206
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>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence
          Length = 185588

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    cccttctgcttgagggtaat 340
              ||||||||||||||||||||
Sbjct: 134566 cccttctgcttgagggtaat 134585
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>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete
             sequence
          Length = 129610

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   tgtctcccaagctgagtgca 362
             ||||||||||||||||||||
Sbjct: 44905 tgtctcccaagctgagtgca 44886
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>emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-896J10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166862

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 207    tttgtacattataaaaacatcttt 230
              ||||||||||||||||||| ||||
Sbjct: 106494 tttgtacattataaaaacaacttt 106517
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>dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene
           region, section 8/19, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 321 cccttctgcttgagggtaat 340
           ||||||||||||||||||||
Sbjct: 911 cccttctgcttgagggtaat 892


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,017,632
Number of Sequences: 3902068
Number of extensions: 4017632
Number of successful extensions: 79228
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79027
Number of HSP's gapped (non-prelim): 201
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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