>TIM21_GIBZE (Q4HZ95) Import inner membrane translocase subunit TIM21,|
           mitochondrial precursor
          Length = 229

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +3

Query: 108 TEEGQKRSIFTVNRASPQIQWPLLFFKTISENATLQSASW------MGLSGGQVYSVFCE 269
           T  G KR   T    +  + W  L     +  AT QS ++      + L+GG  Y ++ +
Sbjct: 40  TPRGPKRRAVTPFNDNGHVPWKQLSVAEKAARATQQSFNFGMILVGLMLTGGVGYFLWTD 99

Query: 270 IASPNLRKSSASDALDELAQD 332
           + SP+ + S+ + A+D++  D
Sbjct: 100 VFSPDSKISNFNRAVDKIRSD 120

>TIM21_ASPFU (Q4X1I8) Import inner membrane translocase subunit tim21,|
           mitochondrial precursor
          Length = 237

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
 Frame = +3

Query: 69  TKGRPKRREKTAKTEEGQKRSIFTVNRASPQIQWPLLFFKTISENATLQSASWMG----- 233
           +K  P+RR  T  +++G+              +W  L  +     AT QS +++      
Sbjct: 47  SKATPRRRNVTVLSDDGR-------------YEWGELSGREKVARATQQSLNFLVIVAGA 93

Query: 234 -LSGGQVYSVFCEIASPNLRKSSASDALDELAQD 332
            L+GG  Y ++ E+ SPN R      A+  +  D
Sbjct: 94  VLTGGVFYLLYTEVFSPNSRTWQFEKAVQRIKDD 127

>THYG_RAT (P06882) Thyroglobulin precursor|
          Length = 2768

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 384  VDDWGDAVFGGASGQTRQLRTCTTSCIVGRS 476
            VD WG+ + G    ++ Q+  C TSC + R+
Sbjct: 1053 VDGWGELIPGSLMARSSQMPQCPTSCELSRA 1083

>Y1688_HALSA (Q06847) Hypothetical protein Vng1688c|
          Length = 283

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 240 GGQVYSVFCEIASPNLRKSSASDALDELAQDRALAPLRLT 359
           GG V +V    A+P   +  A D  DELA    L PLRL+
Sbjct: 54  GGFVETVLRYAATPPYLRKEAFDTRDELAYAGVLPPLRLS 93

>APBB2_MOUSE (Q9DBR4) Amyloid beta A4 precursor protein-binding family B member|
           2
          Length = 760

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 443 PQLPGLPRSAPEDG-VAPVVHGPELRE 366
           PQ P  P+S+PEDG VA V   PE ++
Sbjct: 208 PQKPNKPQSSPEDGQVATVSSSPETKK 234


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,156,798
Number of Sequences: 219361
Number of extensions: 1037989
Number of successful extensions: 3845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3837
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)