>EMSY_BRARE (Q7ZUV7) Protein EMSY|
          Length = 1173

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 301 TTAPPSARVPATNSVAEKTPLRCPPAPGDAVLSS 200
           T+ PPSA  P+++S A K+P    PA    VL S
Sbjct: 151 TSTPPSASAPSSSSAAVKSPRPASPASNVVVLPS 184

>CYLD_HUMAN (Q9NQC7) Probable ubiquitin carboxyl-terminal hydrolase CYLD (EC|
           3.1.2.15) (Ubiquitin thioesterase CYLD)
           (Ubiquitin-specific-processing protease CYLD)
           (Deubiquitinating enzyme CYLD)
          Length = 956

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 194 VPTAQDSVTRSRRATQWRLLSDGVGRRNAGRGRSCCAAGSASGPWRPQRA 343
           +P   +SVT+ RR  +   +S GVG + +       A GS S P    R+
Sbjct: 303 IPALSESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRS 352

>TRUA_MYCTU (P65846) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 297

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +2

Query: 56  VHNFSSVTRH--GNHTISDRQRVSLQGSKNSFTRRFVSAIFHMLLERTVPTAQDSVTRSR 229
           +H+F++  RH  G  TI D QR+    +    T    +  F   + R++  A  +V   R
Sbjct: 185 LHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHR 244

Query: 230 RATQW-RLLSDGVGR 271
           RAT W R L    GR
Sbjct: 245 RATTWCRELLTATGR 259

>TRUA_MYCBO (P65847) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 297

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +2

Query: 56  VHNFSSVTRH--GNHTISDRQRVSLQGSKNSFTRRFVSAIFHMLLERTVPTAQDSVTRSR 229
           +H+F++  RH  G  TI D QR+    +    T    +  F   + R++  A  +V   R
Sbjct: 185 LHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHR 244

Query: 230 RATQW-RLLSDGVGR 271
           RAT W R L    GR
Sbjct: 245 RATTWCRELLTATGR 259

>YQCA_BACSU (P45936) Hypothetical protein yqcA|
          Length = 192

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 159 YLPFFTCYLKEPCQLLRTASPGAGGQRSGVFSATELVAGTRAEGGAVVQQDQLQAP 326
           YLP F   LKE  +LL+  +P    Q + +F  T+ +  T A  G    +  L  P
Sbjct: 10  YLPPFLTKLKEMAELLKAEAPEFEKQNNSIFDLTDQLFVTTATWGLERWEKILNVP 65

>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)|
           (EBNA-2) (EBNA2)
          Length = 451

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 197 PTAQDSVTRSRRATQWRLLSDGVGR-RNAGRGRSCCAAGSASGPWRPQ 337
           P   D    S+   Q R  S G GR R  GRG+S        GPWRP+
Sbjct: 291 PPICDPPQPSKTQGQSRGQSRGRGRGRGRGRGKSRDKQRKPGGPWRPE 338

>FGRL1_RAT (Q7TQM3) Fibroblast growth factor receptor-like 1 precursor (FGF|
           receptor-like protein 1)
          Length = 529

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
 Frame = +3

Query: 186 KEPCQLLRTAS------PGAGGQRSGVFSATELVAGTRAEGGAVVQQDQLQAPGVLNGPR 347
           K+PC    T        PG   +RSG      L  G   E G+ +    + APG   GP+
Sbjct: 399 KKPCAPASTLPVPGHRPPGTSRERSGDKDLPSLAVGICEEHGSTMAPQHILAPGSTAGPK 458

>ARMX2_HUMAN (Q7L311) Armadillo repeat-containing X-linked protein 2 (Protein|
           ALEX2) (ARM protein lost in epithelial cancers on
           chromosome X 2)
          Length = 632

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
 Frame = +3

Query: 72  QSPGMAIIPYQTDSVFHCKDQRTRLPGVLYLPFFTCYLKEPCQLLRTASPGAGGQRSGVF 251
           ++P MA  P   ++    +  R  +P    +P       E  +    A+P    +  GV 
Sbjct: 153 EAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVA 212

Query: 252 SATELVAGT--RAEGGAVVQQDQLQAPGVLNGPRGSIPPG 365
           S TE           GA       ++PG    PR ++ PG
Sbjct: 213 SPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPG 252

>VE2_HPV08 (P06422) Regulatory protein E2|
          Length = 498

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
 Frame = +2

Query: 32  SRLPTCITVHNFSSVTRHGNHTISDRQRVSLQGS----KNSFTRRFVSAIFHMLLERTVP 199
           SR  T     + S V   G+ T+S  +  SL  +      S +R   +A       R  P
Sbjct: 267 SRHRTRSRSRSLSRVRAVGSTTVSRSRSSSLTKAVRPRSRSRSRGRATATSRRRAGRGSP 326

Query: 200 TAQDSVTRSRRATQWRLLSDGVGRRNAGRG-RSCCAAGSASGPWRPQRASGQHS 358
             + S +RS     ++    G GRR  GRG R      S++ P   +R+ G+ S
Sbjct: 327 RRRRSTSRSPSTNTFKRSQRGGGRRGRGRGSRGRRERSSSTSPTPTKRSRGESS 380

>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like|
           protein)
          Length = 349

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 364 PGGMLPRGPLRTPGA*S*SCCTTAPPSARVPATNSVAEKTPLRCPPAP 221
           PG   P G   +P + S     T+PP +  P + S    +P   PPAP
Sbjct: 175 PGSTTPPGGAHSPKSSSAVSPATSPPGSMAPKSGSPV--SPTTSPPAP 220

>CS029_MOUSE (Q9CS00) Protein C19orf29 homolog|
          Length = 772

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 187 KNRANCSGQRHQEQEGNAVASSQRRSWSP 273
           +N+++CS    +  +G+      RRSWSP
Sbjct: 105 QNQSSCSDSGEERAQGSWARKGHRRSWSP 133

>STE11_SCHPO (P36631) Transcription factor ste11|
          Length = 468

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 187 KNRANCSGQRHQEQEGNAVASSQRRSWSPERGQREELL-CSRISFRPLASS 336
           +N +NCS +R  + +     S Q  S SPE    + L  CS I  RP   S
Sbjct: 257 QNSSNCSARRVPKFDSKGTVSEQSNSDSPELSADKVLSHCSPIDARPSTPS 307

>Y004_MYCPA (Q9L7L4) UPF0232 protein MAP_0004|
          Length = 181

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 197 PTAQDSVTRSRRATQWRLLSDGVGRRNAGRGRSCCAAGSASGPWRPQRASGQHSSW 364
           PTA D V R+    +    + G   ++AGRGR+            P+R +GQ  SW
Sbjct: 13  PTAMDLVRRTLEEARAAARAQG---KDAGRGRAAAPT--------PRRVAGQRRSW 57

>E41L4_BRARE (O57457) Band 4.1-like protein 4 (Nbl4 protein)|
          Length = 619

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 47  CITVHNFSSVTRHGNHTISDR-QRVSLQGSKNSFTRRFVSAIFHMLLERTVPTAQDSVTR 223
           C+  H F  +  + +++++ +  + S  GSK+ ++ +    I     E T+P A   V R
Sbjct: 288 CVEHHTFFRMPENESNSLTRKLSKFSSLGSKHRYSGKTAMQIGRESTE-TLPRADLQVIR 346

Query: 224 SRRATQWRLLSDGVGRRNAGR 286
           +R  T  +  +   GR N G+
Sbjct: 347 TRSKTYPKRSTQPAGRNNGGQ 367

>AHNK_HUMAN (Q09666) Neuroblast differentiation-associated protein AHNAK|
            (Desmoyokin) (Fragments)
          Length = 2960

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 13/61 (21%)
 Frame = +3

Query: 222  GAGGQRSG--VFSATEL----------VAGTRAEGGAVVQQDQLQAPGV-LNGPRGSIPP 362
            G+GG+  G  V SA  L           +G + EGG    Q  LQAPG+ ++GP+G +  
Sbjct: 2662 GSGGEWKGPQVSSALNLDTSKFAGGLHFSGPKVEGGVKGGQIGLQAPGLSVSGPQGHLES 2721

Query: 363  G 365
            G
Sbjct: 2722 G 2722

>GCP4_DROME (Q9VKU7) Gamma-tubulin complex component 4 homolog (Gamma ring|
           complex protein 75) (dGrip75)
          Length = 650

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +2

Query: 11  LCHVHILSRLPTCITVHNFSSVTRHGNHTISDRQRVSLQGSKNSFTRRFVSAIFHMLL 184
           +  +H+L+ L  C+ +HN      HG+  +    ++ ++  KN+    F S++ H LL
Sbjct: 133 ITEIHVLN-LRGCVLLHNLHQQCEHGDIQLEKAIKIIMKPVKNA----FFSSLAHWLL 185

>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein)
          Length = 5085

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 343 GPLRTPGA*S*SCCTTAPPSARVPATNSVAEKTPLRCPPAPGDAVLSSWHGSF 185
           GP ++P   + +  + A P A+ P   +  EKT     P P     +  HG F
Sbjct: 287 GPAKSPAQPAGTGKSPAQPPAKTPGQQAGLEKTSSSQQPGPKSLAQTPGHGKF 339

>LIP2_STAAR (Q6GJZ6) Lipase 2 precursor (EC 3.1.1.3) (Glycerol ester hydrolase|
           2)
          Length = 691

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 295 APPSARVPATNSVAEKTPLRCPPAPGDAVLSSWHGSFK----*HVKNGRYKT 152
           A  S ++P TN+ A+K  L  P   G+A+ S    S K     H +NG+  T
Sbjct: 35  AQASEKIPTTNAAAQKETLNQPGEQGNAITSHQMQSGKQLDDMHKENGKSGT 86

>GATA_SYNEL (Q8DK65) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 482

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +2

Query: 179 LLERTVPTAQDSVTRSRRATQWRLLSDGVGRRNA-----GRGRSCCAAGSASGPWRPQRA 343
           +LE  VP  + +VT   +A    +    VG+ N      G      A G  + PW P+R 
Sbjct: 91  MLEHFVPPYESTVTEKLQAAGAIM----VGKTNLDEFAMGSSTENSAFGFTANPWNPERV 146

Query: 344 SGQHS 358
           SG  S
Sbjct: 147 SGGSS 151

>FRAT1_HUMAN (Q92837) Proto-oncogene FRAT1 (Frequently rearranged in advanced|
           T-cell lymphomas) (Frat-1)
          Length = 279

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -3

Query: 349 PRGPLRTPGA*S*SCCTTAPPSARVPATNSVAEKTPLRCPPAPGDAV 209
           P  PLR PG          P +A VPA  + +   PL  PPA  + V
Sbjct: 67  PGAPLRAPG----------PLAAAVPADKARSPAVPLLLPPALAETV 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,644,289
Number of Sequences: 219361
Number of extensions: 1273328
Number of successful extensions: 4235
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4227
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)