Clone Name | rbastl44a01 |
---|---|
Clone Library Name | barley_pub |
>gb|AY366476.1| Triticum aestivum plastidic alpha 1,4-glucan phosphorylase mRNA, partial cds Length = 2307 Score = 299 bits (151), Expect = 4e-78 Identities = 160/163 (98%) Strand = Plus / Minus Query: 267 aggttcctggaaactgcttgaattactcagggcatgatgacggggctgatatcccatatg 326 |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 2012 aggttcctggaagctgcttgaattattcagggcatgatgacggggctgatatcccatatg 1953 Query: 327 tccttggcgtactcgtggatcgtccggtcactgctgaacttgggggaacccgctgtgttg 386 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1952 tccttggcgtactcatggatcgtccggtcactgctgaacttgggggaacccgctgtgttg 1893 Query: 387 aggatagacattcttgtccatagcttctgatctcggtatgctt 429 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1892 aggatagacattcttgtccatagcttctgatctcggtatgctt 1850 Score = 218 bits (110), Expect = 1e-53 Identities = 182/206 (88%) Strand = Plus / Minus Query: 4 tcatttgccatttatttatcatcacagatacaccaaagtttgtttgtttgatgattctgc 63 |||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 2283 tcatttaccatttatttatcattacagatacaccaaagtatgtttgtttgatgattctgc 2224 Query: 64 tccaacattattcggcgaaattcgcacactataagcccgggtgacactggctaaccggca 123 |||||| |||||||||||||| | ||||| ||||||| |||| | |||||| ||| | | Sbjct: 2223 tccaactttattcggcgaaatacacacaccataagcctgggtaatactggccaactgaaa 2164 Query: 124 tgcaagtttgttaaagatgaactatcctgcatgctctcagctctcaggttcatgtcagag 183 ||||| ||| ||| ||| ||||| ||||||||||||||| ||||||| ||||||||| Sbjct: 2163 agcaagattgctaaggattaactacactgcatgctctcagcactcaggtccatgtcagaa 2104 Query: 184 cttgcatatgcctatacaaaactggg 209 |||||||||||||||||||||||||| Sbjct: 2103 cttgcatatgcctatacaaaactggg 2078
>gb|AY366475.1| Triticum aestivum plastidic alpha 1,4-glucan phosphorylase 3 mRNA, partial cds Length = 1983 Score = 299 bits (151), Expect = 4e-78 Identities = 160/163 (98%) Strand = Plus / Minus Query: 267 aggttcctggaaactgcttgaattactcagggcatgatgacggggctgatatcccatatg 326 |||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 1664 aggttcctggaagctgcttgaattattcagggcatgatgacagggctgatatcccatatg 1605 Query: 327 tccttggcgtactcgtggatcgtccggtcactgctgaacttgggggaacccgctgtgttg 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1604 tccttggcgtactcgtggatcgtccggtcactgctgaacttgggggaacccgctgtgttg 1545 Query: 387 aggatagacattcttgtccatagcttctgatctcggtatgctt 429 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1544 aggatagacattcttgtccatagcttctgatctcggtatgctt 1502 Score = 212 bits (107), Expect = 7e-52 Identities = 183/206 (88%), Gaps = 3/206 (1%) Strand = Plus / Minus Query: 4 tcatttgccatttatttatcatcacagatacaccaaagtttgtttgtttgatgattctgc 63 |||||| || |||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 1931 tcatttaccctttatttatcattacagatacaccaaagtatgtttgtttgatgattctgc 1872 Query: 64 tccaacattattcggcgaaattcgcacactataagcccgggtgacactggctaaccggca 123 |||||| |||||||||||||| ||||| ||||||| |||| | |||||| ||| | || Sbjct: 1871 tccaactttattcggcgaaat--acacaccataagcctgggt-atactggccaactgaca 1815 Query: 124 tgcaagtttgttaaagatgaactatcctgcatgctctcagctctcaggttcatgtcagag 183 |||||| ||| ||| ||||||||| |||||||||||||||| ||||||| |||| |||| Sbjct: 1814 tgcaagattgctaaggatgaactaccctgcatgctctcagcactcaggtccatgccagaa 1755 Query: 184 cttgcatatgcctatacaaaactggg 209 |||||||||||||||||||||||||| Sbjct: 1754 cttgcatatgcctatacaaaactggg 1729
>gb|AY357118.1| Triticum aestivum plastidic alpha 1,4-glucan phosphorylase mRNA, partial cds; nuclear gene for plastid product Length = 2834 Score = 299 bits (151), Expect = 4e-78 Identities = 160/163 (98%) Strand = Plus / Minus Query: 267 aggttcctggaaactgcttgaattactcagggcatgatgacggggctgatatcccatatg 326 |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 2540 aggttcctggaagctgcttgaattattcagggcatgatgacggggctgatatcccatatg 2481 Query: 327 tccttggcgtactcgtggatcgtccggtcactgctgaacttgggggaacccgctgtgttg 386 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2480 tccttggcgtactcatggatcgtccggtcactgctgaacttgggggaacccgctgtgttg 2421 Query: 387 aggatagacattcttgtccatagcttctgatctcggtatgctt 429 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2420 aggatagacattcttgtccatagcttctgatctcggtatgctt 2378 Score = 220 bits (111), Expect = 3e-54 Identities = 184/207 (88%), Gaps = 1/207 (0%) Strand = Plus / Minus Query: 4 tcatttgccatttatttatcatcacagatacaccaaagtttgtttgtttgatgattctgc 63 |||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 2812 tcatttaccatttatttatcattacagatacaccaaagtatgtttgtttgatgattctgc 2753 Query: 64 tccaacatt-attcggcgaaattcgcacactataagcccgggtgacactggctaaccggc 122 |||||| || |||||||||||| | ||||| ||||||| |||| | |||||| ||| | | Sbjct: 2752 tccaacctttattcggcgaaatacacacaccataagcctgggtaatactggccaactgac 2693 Query: 123 atgcaagtttgttaaagatgaactatcctgcatgctctcagctctcaggttcatgtcaga 182 | ||||| ||| ||| ||| ||||| |||||||||||||||| ||||||| ||||||||| Sbjct: 2692 acgcaagattgctaaggattaactaccctgcatgctctcagcactcaggtccatgtcaga 2633 Query: 183 gcttgcatatgcctatacaaaactggg 209 |||||||||||||||||||||||||| Sbjct: 2632 acttgcatatgcctatacaaaactggg 2606
>gb|AY366474.1| Triticum aestivum plastidic alpha 1,4-glucan phosphorylase 2 mRNA, partial cds Length = 1683 Score = 291 bits (147), Expect = 9e-76 Identities = 159/163 (97%) Strand = Plus / Minus Query: 267 aggttcctggaaactgcttgaattactcagggcatgatgacggggctgatatcccatatg 326 |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct: 1400 aggttcctggaagctgcttgaattattcagggcatgatgacggggctgataccccatatg 1341 Query: 327 tccttggcgtactcgtggatcgtccggtcactgctgaacttgggggaacccgctgtgttg 386 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1340 tccttggcatactcgtggatcgtccggtcactgctgaacttgggggaacccgctgtgttg 1281 Query: 387 aggatagacattcttgtccatagcttctgatctcggtatgctt 429 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1280 aggatagacattcttgtccatagcttctgatctcggtatgctt 1238 Score = 228 bits (115), Expect = 1e-56 Identities = 178/199 (89%) Strand = Plus / Minus Query: 11 ccatttatttatcatcacagatacaccaaagtttgtttgtttgatgattctgctccaaca 70 ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 1663 ccatttatttatcattacagatacaccaaagtatgtttgtttgatgactctgctccaact 1604 Query: 71 ttattcggcgaaattcgcacactataagcccgggtgacactggctaaccggcatgcaagt 130 |||||| ||||||| | ||||| ||||||| |||| | |||||||||| | ||||||| Sbjct: 1603 ttattcagcgaaatacacacaccataagcctgggtaatactggctaactgacatgcaata 1544 Query: 131 ttgttaaagatgaactatcctgcatgctctcagctctcaggttcatgtcagagcttgcat 190 ||| ||| ||||||||| |||||||||||||||| ||||||| ||||||||| ||||||| Sbjct: 1543 ttgctaaggatgaactaccctgcatgctctcagcactcaggtccatgtcagaacttgcat 1484 Query: 191 atgcctatacaaaactggg 209 ||||||||||||||||||| Sbjct: 1483 atgcctatacaaaactggg 1465
>ref|XM_469836.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3133 Score = 141 bits (71), Expect = 2e-30 Identities = 119/135 (88%) Strand = Plus / Minus Query: 295 agggcatgatgacggggctgatatcccatatgtccttggcgtactcgtggatcgtccggt 354 |||||| |||||| || |||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 2854 agggcaggatgacaggcttgatgtcccagatgtccttggcgtactcgtgaatcgtccggt 2795 Query: 355 cactgctgaacttgggggaacccgctgtgttgaggatagacattcttgtccatagcttct 414 | ||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||| Sbjct: 2794 cgctgttgaacttggaggaactggctgtgttgaggattgacatccttgtccatagtttct 2735 Query: 415 gatctcggtatgctt 429 |||| |||||||||| Sbjct: 2734 gatcgcggtatgctt 2720
>gb|AF327055.1|AF327055 Oryza sativa alpha 1,4-glucan phosphorylase L isozyme mRNA, partial cds Length = 3141 Score = 141 bits (71), Expect = 2e-30 Identities = 119/135 (88%) Strand = Plus / Minus Query: 295 agggcatgatgacggggctgatatcccatatgtccttggcgtactcgtggatcgtccggt 354 |||||| |||||| || |||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 2786 agggcaggatgacaggcttgatgtcccagatgtccttggcgtactcgtgaatcgtccggt 2727 Query: 355 cactgctgaacttgggggaacccgctgtgttgaggatagacattcttgtccatagcttct 414 | ||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||| Sbjct: 2726 cgctgttgaacttggaggaactggctgtgttgaggattgacatccttgtccatagtttct 2667 Query: 415 gatctcggtatgctt 429 |||| |||||||||| Sbjct: 2666 gatcgcggtatgctt 2652
>dbj|AK063766.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B07, full insert sequence Length = 3049 Score = 141 bits (71), Expect = 2e-30 Identities = 119/135 (88%) Strand = Plus / Minus Query: 295 agggcatgatgacggggctgatatcccatatgtccttggcgtactcgtggatcgtccggt 354 |||||| |||||| || |||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 2684 agggcaggatgacaggcttgatgtcccagatgtccttggcgtactcgtgaatcgtccggt 2625 Query: 355 cactgctgaacttgggggaacccgctgtgttgaggatagacattcttgtccatagcttct 414 | ||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||| Sbjct: 2624 cgctgttgaacttggaggaactggctgtgttgaggattgacatccttgtccatagtttct 2565 Query: 415 gatctcggtatgctt 429 |||| |||||||||| Sbjct: 2564 gatcgcggtatgctt 2550
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 295 agggcatgatgacggggctgatatcccatatgtccttggcgtactcgtggatcgtccggt 354 |||||| |||||| || |||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 31028476 agggcaggatgacaggcttgatgtcccagatgtccttggcgtactcgtgaatcgtccggt 31028535 Query: 355 cactgctgaacttgggggaacccgctgtgttgaggatagacattcttgtccatagct 411 | ||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||||| Sbjct: 31028536 cgctgttgaacttggaggaactggctgtgttgaggattgacatccttgtccatagct 31028592
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Minus Query: 295 agggcatgatgacggggctgatatcccatatgtccttggcgtactcgtggatcgtccggt 354 |||||| |||||| || |||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 67588 agggcaggatgacaggcttgatgtcccagatgtccttggcgtactcgtgaatcgtccggt 67529 Query: 355 cactgctgaacttgggggaacccgctgtgttgaggatagacattcttgtccatagct 411 | ||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||||| Sbjct: 67528 cgctgttgaacttggaggaactggctgtgttgaggattgacatccttgtccatagct 67472
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 295 agggcatgatgacggggctgatatcccatatgtccttggcgtactcgtggatcgtccggt 354 |||||| |||||| || |||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 31118999 agggcaggatgacaggcttgatgtcccagatgtccttggcgtactcgtgaatcgtccggt 31119058 Query: 355 cactgctgaacttgggggaacccgctgtgttgaggatagacattcttgtccatagct 411 | ||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||||| Sbjct: 31119059 cgctgttgaacttggaggaactggctgtgttgaggattgacatccttgtccatagct 31119115
>gb|BT018213.1| Zea mays clone EL01N0561A02.c mRNA sequence Length = 1470 Score = 119 bits (60), Expect = 8e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 309 gggctgatatcccatatgtccttggcgtactcgtggatcgtccggtcactgctgaacttg 368 |||||||||||||| || |||||||||||||| || ||||||| || |||||||||||| Sbjct: 1129 gggctgatatcccagatatccttggcgtactcatgaatcgtcctatcgctgctgaacttg 1070 Query: 369 ggggaacccgctgtgttgaggatagacattcttgtccatagcttctgatctcggta 424 | || || || ||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 1069 gatgagccagccgtgttgaggatagacatccttgtccataacttctgatctcggta 1014
>gb|AY106211.1| Zea mays PCO070449 mRNA sequence Length = 2149 Score = 119 bits (60), Expect = 8e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 309 gggctgatatcccatatgtccttggcgtactcgtggatcgtccggtcactgctgaacttg 368 |||||||||||||| || |||||||||||||| || ||||||| || |||||||||||| Sbjct: 1775 gggctgatatcccagatatccttggcgtactcatgaatcgtcctatcgctgctgaacttg 1716 Query: 369 ggggaacccgctgtgttgaggatagacattcttgtccatagcttctgatctcggta 424 | || || || ||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 1715 gatgagccagccgtgttgaggatagacatccttgtccataacttctgatctcggta 1660
>ref|NM_113857.2| Arabidopsis thaliana phosphorylase/ transferase, transferring glycosyl groups AT3G29320 mRNA, complete cds Length = 3165 Score = 89.7 bits (45), Expect = 7e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 315 atatcccatatgtccttggcgtactcgtggatcgtccggtcactgctgaacttgggggaa 374 |||| ||||||||| |||||||| ||||||||||||||||||||||| |||||| ||| Sbjct: 2916 atattccatatgtctttggcgtattcgtggatcgtccggtcactgctaaacttgaatgaa 2857 Query: 375 cccgctgtgttgaggatagacattcttgtccatagcttctgatctcggtatgc 427 || |||||||| | || |||||||| |||||| ||||| ||||||||||| Sbjct: 2856 cctgctgtgttcattattgacattctcgtccatcttttctggtctcggtatgc 2804
>dbj|AK221378.1| Arabidopsis thaliana mRNA for alpha-glucan phosphorylase, partial cds, clone: RAFL25-38-C05 Length = 594 Score = 89.7 bits (45), Expect = 7e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 315 atatcccatatgtccttggcgtactcgtggatcgtccggtcactgctgaacttgggggaa 374 |||| ||||||||| |||||||| ||||||||||||||||||||||| |||||| ||| Sbjct: 426 atattccatatgtctttggcgtattcgtggatcgtccggtcactgctaaacttgaatgaa 367 Query: 375 cccgctgtgttgaggatagacattcttgtccatagcttctgatctcggtatgc 427 || |||||||| | || |||||||| |||||| ||||| ||||||||||| Sbjct: 366 cctgctgtgttcattattgacattctcgtccatcttttctggtctcggtatgc 314
>gb|AY049235.1| Arabidopsis thaliana AT3g29320/MUO10_2 mRNA, complete cds Length = 3114 Score = 89.7 bits (45), Expect = 7e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 315 atatcccatatgtccttggcgtactcgtggatcgtccggtcactgctgaacttgggggaa 374 |||| ||||||||| |||||||| ||||||||||||||||||||||| |||||| ||| Sbjct: 2916 atattccatatgtctttggcgtattcgtggatcgtccggtcactgctaaacttgaatgaa 2857 Query: 375 cccgctgtgttgaggatagacattcttgtccatagcttctgatctcggtatgc 427 || |||||||| | || |||||||| |||||| ||||| ||||||||||| Sbjct: 2856 cctgctgtgttcattattgacattctcgtccatcttttctggtctcggtatgc 2804
>gb|BT003015.1| Arabidopsis thaliana At3g29320/MUO10_2 gene, complete cds Length = 2889 Score = 89.7 bits (45), Expect = 7e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 315 atatcccatatgtccttggcgtactcgtggatcgtccggtcactgctgaacttgggggaa 374 |||| ||||||||| |||||||| ||||||||||||||||||||||| |||||| ||| Sbjct: 2867 atattccatatgtctttggcgtattcgtggatcgtccggtcactgctaaacttgaatgaa 2808 Query: 375 cccgctgtgttgaggatagacattcttgtccatagcttctgatctcggtatgc 427 || |||||||| | || |||||||| |||||| ||||| ||||||||||| Sbjct: 2807 cctgctgtgttcattattgacattctcgtccatcttttctggtctcggtatgc 2755
>dbj|AP001309.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUO10 Length = 77589 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Minus Query: 315 atatcccatatgtccttggcgtactcgtggatcgtccggtcactgctgaacttgggggaa 374 |||| ||||||||| |||||||| ||||||||||||||||||||||| |||||| ||| Sbjct: 7206 atattccatatgtctttggcgtattcgtggatcgtccggtcactgctaaacttgaatgaa 7147 Query: 375 cccgctgtgttgaggatagacattcttgtccat 407 || |||||||| | || |||||||| |||||| Sbjct: 7146 cctgctgtgttcattattgacattctcgtccat 7114
>emb|X85181.1|SOSTPII S.oleracea mRNA for alpha-glucan phosphorylase Length = 3088 Score = 46.1 bits (23), Expect = 0.093 Identities = 53/63 (84%) Strand = Plus / Minus Query: 345 atcgtccggtcactgctgaacttgggggaacccgctgtgttgaggatagacattcttgtc 404 ||||| ||||| ||||| |||||| ||||| ||||| || ||||| |||||||||||| Sbjct: 2920 atcgttcggtcgctgctaaacttgaatgaaccagctgtatttaggattgacattcttgtc 2861 Query: 405 cat 407 ||| Sbjct: 2860 cat 2858
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Minus Query: 333 gcgtactcgtggatcgtccggtc 355 ||||||||||||||||||||||| Sbjct: 1005245 gcgtactcgtggatcgtccggtc 1005223
>gb|AC154258.2| Mus musculus BAC clone RP24-216P24 from chromosome 16, complete sequence Length = 151118 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 50 tttgatgattctgctccaacat 71 |||||||||||||||||||||| Sbjct: 58244 tttgatgattctgctccaacat 58223
>gb|AC009251.6|AC009251 Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone BACR48K02, complete sequence Length = 178530 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 gtttgtttgtttgatgattctg 62 |||||||||||||||||||||| Sbjct: 79325 gtttgtttgtttgatgattctg 79304
>gb|AE003655.3| Drosophila melanogaster chromosome 2L, section 64 of 83 of the complete sequence Length = 253771 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 gtttgtttgtttgatgattctg 62 |||||||||||||||||||||| Sbjct: 206950 gtttgtttgtttgatgattctg 206929
>emb|Z36880.1|VFALGLPH Vicia faba var. minor mRNA for alpha 1,4-glucan phosphorylase L isoform precursor (VfPho1 gene) Length = 3283 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 351 cggtcactgctgaacttgggggaacccgctgtgttgaggatagacattcttgtccat 407 |||||||||||||| |||| || || |||||||| | || ||||||||||||||| Sbjct: 3011 cggtcactgctgaatttggatgagcctgctgtgttcaatattgacattcttgtccat 2955
>gb|AC118696.14| Mus musculus chromosome 3, clone RP24-62O16, complete sequence Length = 190616 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ctctcactgaggagtgaggc 241 |||||||||||||||||||| Sbjct: 93530 ctctcactgaggagtgaggc 93549
>gb|AC149571.3| Rhinolophus ferrumequinum clone VMRC7-305L23, complete sequence Length = 190426 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 tgaggatagacattcttgtc 404 |||||||||||||||||||| Sbjct: 53807 tgaggatagacattcttgtc 53826
>emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on chromosome 11 Contains the 3' end of a variant of the gene for a novel protein similar to human sperm antigen HCMOGT-1 (B230396K10Rik), the Adora2b gene for adenosine A2b receptor, the gene for a novel protein (2410012H22Rik), a somatic cytochrome c (Cycs) pseudogene, a novel gene, a novel pseudogene, the gene for a novel protein (2810460C24Rik), the 3' end of the Ncor1 gene for nuclear receptor co-repressor 1 and two CpG islands, complete sequence Length = 214834 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gaggttcctggaaactgctt 285 |||||||||||||||||||| Sbjct: 90047 gaggttcctggaaactgctt 90066
>emb|CR759830.8| Zebrafish DNA sequence from clone DKEYP-79F12 in linkage group 23, complete sequence Length = 196033 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ttatcatcacagatacacca 38 |||||||||||||||||||| Sbjct: 42483 ttatcatcacagatacacca 42464
>gb|AC120193.4| Homo sapiens chromosome 8, clone RP11-10H17, complete sequence Length = 174556 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 tgaggagtgaggcaaatctgtgac 252 |||||||||||||||| ||||||| Sbjct: 136079 tgaggagtgaggcaaagctgtgac 136102
>gb|AC100826.2| Homo sapiens chromosome 15, clone RP11-279F6, complete sequence Length = 168512 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 gctctcagctctcaggttca 175 |||||||||||||||||||| Sbjct: 5906 gctctcagctctcaggttca 5887
>dbj|AK095149.1| Homo sapiens cDNA FLJ37830 fis, clone BRSSN2009395 Length = 1782 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 391 tagacattcttgtccatagcttct 414 ||||| |||||||||||||||||| Sbjct: 651 tagacgttcttgtccatagcttct 628
>gb|AC027237.8| Homo sapiens chromosome 15, clone RP11-253M7, complete sequence Length = 157448 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gctctcagctctcaggttca 175 |||||||||||||||||||| Sbjct: 21291 gctctcagctctcaggttca 21310
>gb|AC024958.8| Homo sapiens, clone RP11-561E1, complete sequence Length = 190534 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 tgaggagtgaggcaaatctgtgac 252 |||||||||||||||| ||||||| Sbjct: 122824 tgaggagtgaggcaaagctgtgac 122801
>emb|BX322566.6| Zebrafish DNA sequence from clone CH211-209B6 in linkage group 23, complete sequence Length = 203127 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ttatcatcacagatacacca 38 |||||||||||||||||||| Sbjct: 24498 ttatcatcacagatacacca 24517
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gcatgcaagtttgttaaaga 140 |||||||||||||||||||| Sbjct: 6992203 gcatgcaagtttgttaaaga 6992222
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 tgaggatagacattcttgtc 404 |||||||||||||||||||| Sbjct: 669651 tgaggatagacattcttgtc 669670
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tggcgtactcgtggatcgtc 350 |||||||||||||||||||| Sbjct: 5039098 tggcgtactcgtggatcgtc 5039117
>gb|AC079395.6| Homo sapiens BAC clone RP11-219H23 from 2, complete sequence Length = 82827 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ccgctgtgttgaggatagac 395 |||||||||||||||||||| Sbjct: 21576 ccgctgtgttgaggatagac 21557
>gb|AC140052.4| Mus musculus BAC clone RP23-346E11 from chromosome 15, complete sequence Length = 210091 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 agtttgtttgtttgatgatt 59 |||||||||||||||||||| Sbjct: 125519 agtttgtttgtttgatgatt 125500
>dbj|AP005839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0044K01 Length = 160643 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gcatgcaagtttgttaaaga 140 |||||||||||||||||||| Sbjct: 63374 gcatgcaagtttgttaaaga 63393
>gb|AC024558.21| Homo sapiens 3 BAC RP11-390G14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 216161 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 tagacattcttgtccatagcttct 414 ||||| |||||||||||||||||| Sbjct: 12885 tagacgttcttgtccatagcttct 12908
>emb|AL772179.17| Mouse DNA sequence from clone RP23-100B18 on chromosome 2, complete sequence Length = 194065 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 tttgtttgatgattctgctc 65 |||||||||||||||||||| Sbjct: 91167 tttgtttgatgattctgctc 91148 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,747,804 Number of Sequences: 3902068 Number of extensions: 4747804 Number of successful extensions: 93213 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93056 Number of HSP's gapped (non-prelim): 155 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)