Clone Information

BLAST Search Result

Clone Name	rbastl43h08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AKH2_MAIZE (P49080) Bifunctional aspartokinase/homoserine dehydr...	75	3e-14
2	AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydr...	73	1e-13
3	AKH_DAUCA (P37142) Bifunctional aspartokinase/homoserine dehydro...	65	4e-11
4	AK2H_ECOLI (P00562) Bifunctional aspartokinase/homoserine dehydr...	42	4e-04
5	AK1H_SERMA (P27725) Bifunctional aspartokinase/homoserine dehydr...	39	0.003
6	AK1H_ECOLI (P00561) Bifunctional aspartokinase/homoserine dehydr...	39	0.003
7	AKH_BUCAP (Q8K9U9) Bifunctional aspartokinase/homoserine dehydro...	38	0.007
8	AKH_BUCBP (Q89AR4) Bifunctional aspartokinase/homoserine dehydro...	37	0.012
9	AKH_BUCAI (P57290) Bifunctional aspartokinase/homoserine dehydro...	37	0.012
10	AKH_HAEIN (P44505) Bifunctional aspartokinase/homoserine dehydro...	36	0.020
11	DHOM_YEAST (P31116) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)	35	0.034
12	DHOM_SCHPO (O94671) Probable homoserine dehydrogenase (EC 1.1.1....	35	0.058
13	MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domai...	32	0.49
14	BCA1_YEAST (P38891) Branched-chain-amino-acid aminotransferase, ...	31	0.64
15	GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outg...	30	1.4
16	TBX4_HUMAN (P57082) T-box transcription factor TBX4 (T-box prote...	30	1.9
17	TBX4_MOUSE (P70325) T-box transcription factor TBX4 (T-box prote...	30	1.9
18	TBX4_CANFA (Q861Q9) T-box transcription factor TBX4 (T-box prote...	30	1.9
19	GYRB_BORBU (P33769) DNA gyrase subunit B (EC 5.99.1.3)	29	2.4
20	ARP6_YEAST (Q12509) Actin-like protein ARP6	29	3.2
21	IMMT_HUMAN (Q16891) Mitochondrial inner membrane protein (Mitofi...	29	3.2
22	IMMT_MOUSE (Q8CAQ8) Mitochondrial inner membrane protein (Mitofi...	29	3.2
23	HV3L_HUMAN (P01773) Ig heavy chain V-III region BUR	28	5.4
24	TRFR_CHICK (O93603) Thyrotropin-releasing hormone receptor (TRH-...	28	5.4
25	SEMG2_COLGU (Q5U7M8) Semenogelin-2 precursor (Semenogelin II) (S...	28	5.4
26	MSH2_SCHPO (O74773) DNA mismatch repair protein msh2	28	5.4
27	OPT6_ARATH (Q9T095) Oligopeptide transporter 6 (AtOPT6)	28	5.4
28	TEGU_EBV (P03186) Large tegument protein	28	7.1
29	GUN4_TRIRE (O14405) Endoglucanase-4 precursor (EC 3.2.1.4) (Endo...	28	7.1
30	RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotei...	28	7.1
31	TBX3_CHICK (O73718) T-box transcription factor TBX3 (T-box prote...	28	7.1
32	KRA52_HUMAN (Q701N4) Keratin-associated protein 5-2 (Keratin-ass...	27	9.3
33	RCOR2_XENLA (Q6NRZ0) REST corepressor 2	27	9.3
34	EME1_ASHGO (Q75B88) Crossover junction endonuclease EME1 (EC 3.1...	27	9.3
35	PYRB_PYRFU (Q8U373) Aspartate carbamoyltransferase (EC 2.1.3.2) ...	27	9.3
36	TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-li...	27	9.3
37	NU6M_PIG (O79882) NADH-ubiquinone oxidoreductase chain 6 (EC 1.6...	27	9.3
38	GBF_DICDI (P36417) G-box-binding factor (GBF)	27	9.3
39	MMRN1_HUMAN (Q13201) Multimerin-1 precursor (Endothelial cell mu...	27	9.3
40	DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like p...	27	9.3
41	XYLT_DROPS (Q5QQ53) Xylosyltransferase oxt (EC 2.4.2.26) (Peptid...	27	9.3
42	DFRA_GERHY (P51105) Dihydroflavonol-4-reductase (EC 1.1.1.219) (...	27	9.3
43	L_VSVJO (P16379) Large structural protein (L protein) (Transcrip...	27	9.3
44	L_VSVJH (P13615) Large structural protein (L protein) (Transcrip...	27	9.3

>AKH2_MAIZE (P49080) Bifunctional aspartokinase/homoserine dehydrogenase 2,|
           chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes:
           Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC
           1.1.1.3)]
          Length = 917

 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = -1

Query: 372 KEQPLIVRGPGAGAEVTAGGVFCDILRLASYLGAPS 265
           KEQPLIVRGPGAGAEVTAGGVFCDILRLASYLGAPS
Sbjct: 882 KEQPLIVRGPGAGAEVTAGGVFCDILRLASYLGAPS 917

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>AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydrogenase 1,|
           chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes:
           Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC
           1.1.1.3)]
          Length = 920

 Score = 73.2 bits (178), Expect = 1e-13
 Identities = 34/36 (94%), Positives = 36/36 (100%)
 Frame = -1

Query: 372 KEQPLIVRGPGAGAEVTAGGVFCDILRLASYLGAPS 265
           K+QPLIVRGPGAGAEVTAGGVFCDILRL+SYLGAPS
Sbjct: 885 KDQPLIVRGPGAGAEVTAGGVFCDILRLSSYLGAPS 920

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>AKH_DAUCA (P37142) Bifunctional aspartokinase/homoserine dehydrogenase,|
           chloroplast precursor (AK-HD) (AK-HSDH) [Includes:
           Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC
           1.1.1.3)] (Fragment)
          Length = 921

 Score = 65.1 bits (157), Expect = 4e-11
 Identities = 31/35 (88%), Positives = 33/35 (94%)
 Frame = -1

Query: 369 EQPLIVRGPGAGAEVTAGGVFCDILRLASYLGAPS 265
           +QP I+RGPGAGAEVTAGGVF DILRLASYLGAPS
Sbjct: 887 KQPPIIRGPGAGAEVTAGGVFSDILRLASYLGAPS 921

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>AK2H_ECOLI (P00562) Bifunctional aspartokinase/homoserine dehydrogenase II|
           (AKII-HDII) [Includes: Aspartokinase II (EC 2.7.2.4);
           Homoserine dehydrogenase II (EC 1.1.1.3)]
          Length = 809

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = -1

Query: 372 KEQPLIVRGPGAGAEVTAGGVFCDILRLASYL 277
           ++ PL++RGPGAG +VTAG +  DI RLA  L
Sbjct: 778 RDNPLVIRGPGAGRDVTAGAIQSDINRLAQLL 809

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>AK1H_SERMA (P27725) Bifunctional aspartokinase/homoserine dehydrogenase I|
           (AKI-HDI) [Includes: Aspartokinase I (EC 2.7.2.4);
           Homoserine dehydrogenase I (EC 1.1.1.3)]
          Length = 819

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -1

Query: 363 PLIVRGPGAGAEVTAGGVFCDILRLASY 280
           PL++RG GAG +VTA GVF D+LR  S+
Sbjct: 788 PLVLRGYGAGNDVTAAGVFADLLRTLSW 815

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>AK1H_ECOLI (P00561) Bifunctional aspartokinase/homoserine dehydrogenase I|
           (AKI-HDI) [Includes: Aspartokinase I (EC 2.7.2.4);
           Homoserine dehydrogenase I (EC 1.1.1.3)]
          Length = 820

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -1

Query: 363 PLIVRGPGAGAEVTAGGVFCDILRLASY 280
           PL++RG GAG +VTA GVF D+LR  S+
Sbjct: 789 PLVLRGYGAGNDVTAAGVFADLLRTLSW 816

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>AKH_BUCAP (Q8K9U9) Bifunctional aspartokinase/homoserine dehydrogenase|
           (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4);
           Homoserine dehydrogenase (EC 1.1.1.3)]
          Length = 814

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = -1

Query: 363 PLIVRGPGAGAEVTAGGVFCDILRL 289
           PL++RG GAG +VTA GVF D+LR+
Sbjct: 788 PLVLRGYGAGNDVTASGVFSDLLRI 812

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>AKH_BUCBP (Q89AR4) Bifunctional aspartokinase/homoserine dehydrogenase|
           (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4);
           Homoserine dehydrogenase (EC 1.1.1.3)]
          Length = 816

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -1

Query: 363 PLIVRGPGAGAEVTAGGVFCDILRL 289
           PL++RG GAG  VTA G+F D+LR+
Sbjct: 790 PLVLRGYGAGNNVTASGIFSDVLRI 814

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>AKH_BUCAI (P57290) Bifunctional aspartokinase/homoserine dehydrogenase|
           (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4);
           Homoserine dehydrogenase (EC 1.1.1.3)]
          Length = 816

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = -1

Query: 363 PLIVRGPGAGAEVTAGGVFCDILRLAS 283
           PL++RG GAG  VTA GVF D+LR  S
Sbjct: 790 PLVLRGYGAGNNVTASGVFSDLLRTLS 816

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>AKH_HAEIN (P44505) Bifunctional aspartokinase/homoserine dehydrogenase|
           (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4);
           Homoserine dehydrogenase (EC 1.1.1.3)]
          Length = 815

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -1

Query: 363 PLIVRGPGAGAEVTAGGVFCDILR 292
           PL++RG GAG  VTA G+F DILR
Sbjct: 788 PLLLRGYGAGNAVTAAGIFADILR 811

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>DHOM_YEAST (P31116) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 359

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = -1

Query: 363 PLIVRGPGAGAEVTAGGVFCDILRLASYL 277
           P++++G GAGA VTA GV  D++++A  L
Sbjct: 331 PVVIQGAGAGAAVTAAGVLGDVIKIAQRL 359

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>DHOM_SCHPO (O94671) Probable homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 376

 Score = 34.7 bits (78), Expect = 0.058
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = -1

Query: 366 QPLIVRGPGAGAEVTAGGVFCDILRLASYLGA 271
           +PL+V G GAGA VTA GV  D++++ S + A
Sbjct: 339 RPLVVIGAGAGAAVTAAGVLGDMIKIMSQVRA 370

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>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
           domain-containing protein 4) (Multiple EGF-like domain
           protein 4)
          Length = 2386

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 20/45 (44%), Positives = 22/45 (48%)
 Frame = +2

Query: 209 YKLPAIYLRKSINTVTGIYEGAPR*DASRRMSQKTPPAVTSAPAP 343
           Y   A  L  S+  V G Y G PR D    M+ K PP V  APAP
Sbjct: 55  YSHVAAVLGGSVLLVAGGYSGRPRGDL---MAYKVPPFVFQAPAP 96

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>BCA1_YEAST (P38891) Branched-chain-amino-acid aminotransferase, mitochondrial|
           precursor (EC 2.6.1.42) (BCAT) (TWT1 protein) (ECA39
           protein)
          Length = 393

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
 Frame = +2

Query: 65  ANKTKQNT*SLHPLPRNSTLANKTKHLICFPRKYSEQ--KTTKSNIVQEGYKLP-----A 223
           A +T QNT ++    +N    NK+   IC P   SE+  K T   I Q+ + +P     +
Sbjct: 98  AYRTPQNTITMFRPDKNMARMNKSAARICLPTFESEELIKLTGKLIEQDKHLVPQGNGYS 157

Query: 224 IYLRKS-INTVTGIYEGAP 277
           +Y+R + I T  G+  G P
Sbjct: 158 LYIRPTMIGTSKGLGVGTP 176

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>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 932

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
 Frame = +2

Query: 92  SLHPLPRNSTLANKTKHLICFPRKYSEQKTTKSNIVQEGYKLPAIYLRKSINTVTGIYEG 271
           S  P PR +      K +   P      K T S    +G    +   ++   ++  + E 
Sbjct: 618 SASPSPRKAESQTSAKTVPQAP-----DKATSSLRQSDGTPYSSAQPQRDTRSIGSLPER 672

Query: 272 APR*DASRR-----MSQKTPPAVTSAPAPGPRT 355
            P    S++      +QK+P A  +AP PGPRT
Sbjct: 673 EPSASTSQKDLAAAAAQKSPSAEAAAPPPGPRT 705

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>TBX4_HUMAN (P57082) T-box transcription factor TBX4 (T-box protein 4)|
          Length = 545

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 100 PPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAGH----LPQKIY 243
           P  K + TG   KT Y+L   +    D++ ++C  +  VAG     +P ++Y
Sbjct: 98  PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 149

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>TBX4_MOUSE (P70325) T-box transcription factor TBX4 (T-box protein 4)|
          Length = 552

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 100 PPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAGH----LPQKIY 243
           P  K + TG   KT Y+L   +    D++ ++C  +  VAG     +P ++Y
Sbjct: 103 PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 154

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>TBX4_CANFA (Q861Q9) T-box transcription factor TBX4 (T-box protein 4)|
          Length = 554

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 100 PPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAGH----LPQKIY 243
           P  K + TG   KT Y+L   +    D++ ++C  +  VAG     +P ++Y
Sbjct: 105 PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 156

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>GYRB_BORBU (P33769) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 639

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 100 PPTKEQHTGKQN----KTSYLLSSQVFRTKDYQVQYCARRVQVAGHLPQKIY 243
           P +K +  G+ +    K ++L  S++F T DY      +R++    L  KIY
Sbjct: 152 PTSKVEVVGESSVTGTKVTFLADSEIFETLDYNFDVLEKRLKELAFLNDKIY 203

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>ARP6_YEAST (Q12509) Actin-like protein ARP6|
          Length = 438

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +2

Query: 8   RHSLFYYCTDNLVTVLPWVANKTKQNT*SLHPLPRNSTLANKTKHLICFPRKYSE---QK 178
           +H+L Y   D   + L +V N  K+N     PLP ++ +   T  L   P  +      +
Sbjct: 269 KHALEYVLPDFQTSFLGYVRNPRKENV----PLPEDAQIITLTDELFTIPETFFHPEISQ 324

Query: 179 TTKSNIVQ 202
            TK  IV+
Sbjct: 325 ITKPGIVE 332

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>IMMT_HUMAN (Q16891) Mitochondrial inner membrane protein (Mitofilin) (p87/89)|
           (Proliferation-inducing gene 4 protein)
          Length = 758

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 130 QNKTSYLLSSQVFRTKDYQVQYCARRVQVAGHLPQKIYQYSHRYL 264
           ++ T  + S +  R + Y VQ  ARRV +       +YQY   YL
Sbjct: 619 ESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYL 663

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>IMMT_MOUSE (Q8CAQ8) Mitochondrial inner membrane protein (Mitofilin)|
          Length = 757

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 130 QNKTSYLLSSQVFRTKDYQVQYCARRVQVAGHLPQKIYQYSHRYL 264
           ++ T  + S +  R + Y VQ  ARRV +       +YQY   YL
Sbjct: 618 ESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYL 662

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>HV3L_HUMAN (P01773) Ig heavy chain V-III region BUR|
          Length = 119

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 133 NKTSYLLSSQVFRTKDYQVQYCARRVQVAG 222
           +K +  L  +  RT+D  V YCA+ + VAG
Sbjct: 75  SKBTLYLZMKTLRTEDTAVYYCAKLIAVAG 104

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>TRFR_CHICK (O93603) Thyrotropin-releasing hormone receptor (TRH-R)|
           (Thyroliberin receptor)
          Length = 395

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 112 EQHTG-KQNKTSYLLSSQVFRTKDYQV 189
           E  TG +QN T  LLSSQ F T +YQV
Sbjct: 2   ENGTGDEQNHTGLLLSSQEFVTAEYQV 28

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>SEMG2_COLGU (Q5U7M8) Semenogelin-2 precursor (Semenogelin II) (SGII)|
          Length = 582

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 76  KTKHLIPTPPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQ 213
           K+++ +  P   ++H  K+NK SY  SS    T++ Q+ Y  + +Q
Sbjct: 445 KSQNQVTIPSQDQEHGHKENKISYQSSS----TEERQLNYGGKSIQ 486

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>MSH2_SCHPO (O74773) DNA mismatch repair protein msh2|
          Length = 982

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 90  QVFCFVLFATHGRTVTKLS 34
           Q+ CF LFATH   +TKLS
Sbjct: 825 QIGCFCLFATHYHEMTKLS 843

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>OPT6_ARATH (Q9T095) Oligopeptide transporter 6 (AtOPT6)|
          Length = 736

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
 Frame = -1

Query: 360 LIVRGPGAGAE-VTAGGVFCDILRLASYLGAPS*IP----VTVLIDFLR*MAGNLYPSCT 196
           ++V   G+G   +  G +  D + +++YLG+P   P    V V I F+            
Sbjct: 246 ILVNQLGSGEHGLGIGSIGFDWVTISAYLGSPLASPLFASVNVAIGFV-----------L 294

Query: 195 ILDLVVFCSEYLRGKQIRCFVLFASVLFLGRGCRDQVFCFV 73
           ++ +V     +L     + F +F+S LF+G G R  V   +
Sbjct: 295 VMYIVTPVCYWLNIYDAKTFPIFSSQLFMGNGSRYDVLSII 335

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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 53   LPWVANKTKQNT*SLHPLPRNSTLANKTKHL 145
            +PW   + +++  S+ PLP   T+A K K L
Sbjct: 1081 IPWPLERVEEDDPSIAPLPEFETVAKKQKEL 1111

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>GUN4_TRIRE (O14405) Endoglucanase-4 precursor (EC 3.2.1.4) (Endoglucanase IV)|
           (Endo-1,4-beta-glucanase IV) (Cellulase IV) (EGIV)
          Length = 344

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = +2

Query: 287 ASRRMSQKTPPAVTSAPAPGP 349
           AS R S  TPPA TSAPA GP
Sbjct: 288 ASSRPSS-TPPATTSAPAGGP 307

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>RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1
           papain-like cysteine proteinase (EC 3.4.22.-) (PCP);
           Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP);
           Nonstructural protein
          Length = 3175

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 215 LPAIYLRKSINTVTGIYEGAPR*DASRRMSQKTPPAVTSAPAPGPRT 355
           +PA  +R S N+   + + AP     +  ++   P  T AP P PRT
Sbjct: 396 VPAPRVRPSANSSGDVKDPAPVPPVPKPRTKLATPNPTQAPIPAPRT 442

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>TBX3_CHICK (O73718) T-box transcription factor TBX3 (T-box protein 3)|
           (Fragment)
          Length = 414

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 100 PPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAG----HLPQKIY 243
           PP K + TG   K  Y+L   +    D + ++   R  VAG     +P+++Y
Sbjct: 136 PPFKVRCTGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMY 187

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>KRA52_HUMAN (Q701N4) Keratin-associated protein 5-2 (Keratin-associated protein|
           5.2) (Ultrahigh sulfur keratin-associated protein 5.2)
           (Keratin-associated protein 5-8) (Keratin-associated
           protein 5.8)
          Length = 177

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 119 CCSLVGGVGIRCFV-LFCLPPMAELLPNYQCNN 24
           C S  GG G RC+V + C  P+   +P   C +
Sbjct: 45  CSSSCGGCGSRCYVPVCCCKPVCSWVPACSCTS 77

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>RCOR2_XENLA (Q6NRZ0) REST corepressor 2|
          Length = 503

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
 Frame = +2

Query: 101 PLPRNSTLANKTKHLICFPRKYSE--QKTTKSNIVQEG---------YKLPAIYLRKSIN 247
           P P ++ ++NKT      P +  +  Q T+ S+  Q             LP   LR +I 
Sbjct: 394 PPPASTDMSNKTSGSSQTPNEEDDEVQITSVSSSSQPAPPAAAAAASLSLPPPLLRPAIP 453

Query: 248 TVTGIYEGAPR*DASRRMSQKTPPAVTSAPAPGPR 352
               ++   P     R +  + PP V  AP   PR
Sbjct: 454 CAPTLHRQPPPLQPGRLLQPRPPPLVRPAPRQSPR 488

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>EME1_ASHGO (Q75B88) Crossover junction endonuclease EME1 (EC 3.1.22.-)|
          Length = 714

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +1

Query: 49  SSAMGGKQNKTKHLIPTPPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQ-----YCARRVQ 213
           SS +GG+ + +   + TP   + + G +N+T+ ++++  FR    + Q      C  R+Q
Sbjct: 223 SSELGGESSPSLQALTTPLPAKSNDGDKNQTTNVMTTGGFRLGTMEKQTLNGSACVDRIQ 282

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>PYRB_PYRFU (Q8U373) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate|
           transcarbamylase) (ATCase)
          Length = 308

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 62  VANKTKQNT*SLHPLPRNSTL---ANKTKHLICFPRKYS 169
           V +K K+    +HPLPR   +    +KTKH I F + ++
Sbjct: 254 VLSKAKETLKVMHPLPRVDEIHPEVDKTKHAIYFKQVFN 292

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>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query: 61   GGKQNKTKHLIPTPPTKEQHTGK---QNKTSYLLSSQVFRTK----DYQVQYCARRVQV 216
            G ++ +T+   PTPP  E H G+   +  TS+ L      T+     +++QY  R  Q+
Sbjct: 1946 GREETETETTAPTPPAPEPHLGELTVEEATSHTLHLSWMVTEGEFDSFEIQYTDRDGQL 2004

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>NU6M_PIG (O79882) NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 6)
          Length = 175

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -1

Query: 360 LIVRGPGAGAEVTAGGVFCDILRLASYLGAPS*IPVTVLIDFLR*MAGNLYPSCTILDLV 181
           ++  G G G  +  GG F  ++    YLG      + V+  +   MA  +YP   + +  
Sbjct: 34  IVSGGVGCGIVLNFGGSFLGLMVFLIYLGG-----MLVVFGYTTAMATEMYPEVWVSNKT 88

Query: 180 VFCSEYLRGKQIR-CFVLFA 124
           VF   ++ G  +  C V +A
Sbjct: 89  VF-GAFVSGLMMEFCMVYYA 107

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>GBF_DICDI (P36417) G-box-binding factor (GBF)|
          Length = 708

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
 Frame = +1

Query: 70  QNKTKHLIPTPPTKEQHTGKQNKTSYLL------SSQVFRTKDYQVQYCARRVQV----A 219
           QN+    I  PPT     G  N  S+LL      SS VF + D Q       V       
Sbjct: 47  QNQMNPPILFPPTSSLLGGSSNTPSFLLPPSSIMSSNVFPSHDGQYPDMPNMVDQYQIHP 106

Query: 220 GHLPQKIYQYSHRYL*GGAEVGRQPQDVAEDASGSHLRARAWPAHDQ 360
              P   YQY   ++   A+  + PQ         H + +  P H Q
Sbjct: 107 NQNPHYNYQYQLMFMQQQAQQNQPPQQ--NQQQQHHQQQQQQPQHHQ 151

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>MMRN1_HUMAN (Q13201) Multimerin-1 precursor (Endothelial cell multimerin 1)|
           (EMILIN-4) (Elastin microfibril interface located
           protein 4) (Elastin microfibril interfacer 4)
          Length = 1228

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +2

Query: 128 NKTKHLICFPRKYSEQKTTKSNIVQEGYKLPAIYLRKSINTVTGIYEGAPR*DASRRMSQ 307
           N +KH    P   + QKT  S  V    K+ ++ +  +   ++      P    S     
Sbjct: 21  NNSKHSWTIPEDGNSQKTMPSASVPPN-KIQSLQILPTTRVMSAEIATTPEARTSEDSLL 79

Query: 308 KT--PPAVTSAPAPGPR 352
           K+  PP+ TSAPA G R
Sbjct: 80  KSTLPPSETSAPAEGVR 96

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>DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like protein 1|
            precursor (Down syndrome cell adhesion molecule 2)
          Length = 2053

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
 Frame = +2

Query: 263  YEGAPR*DASRRMSQKT-----PPAVTSAPAPGP 349
            + GAP   ++  + Q+T     PPA T+ PAPGP
Sbjct: 1957 HPGAPAAASTATLPQRTLAMPAPPAGTAPPAPGP 1990

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>XYLT_DROPS (Q5QQ53) Xylosyltransferase oxt (EC 2.4.2.26) (Peptide|
           O-xylosyltransferase)
          Length = 880

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = -2

Query: 131 CLPVCCSL---VGGV--GIRCFVLFCLPPMAELLPNYQCNNK-KGNA 9
           CL +C        GV  G  CF  F  PP A  LP+  CN K  GNA
Sbjct: 170 CLELCLQSGYPYAGVQYGRECFCGFDTPPKAAKLPDSSCNIKCLGNA 216

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>DFRA_GERHY (P51105) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)|
           (Dihydrokaempferol 4-reductase)
          Length = 366

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 59  WVANKTKQNT*SLHPLPRNSTLANKTKHLICFPRKYSEQKTTKSNIVQEG 208
           W+  +  +    +H   R+     K KHL+  P+  +  K  K+++ QEG
Sbjct: 21  WLVMRLLERGYVVHATVRDPGDLKKVKHLLELPKAQTNLKLWKADLTQEG 70

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>L_VSVJO (P16379) Large structural protein (L protein) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2109

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 110 RNSTLANKTKHLICFPRKYSEQKTTKSNIVQEGYKL 217
           RN TL N TKH +C    ++ QK     + Q+G+ +
Sbjct: 659 RNGTLCNSTKHRVC----WNGQKGGLEGLRQKGWSI 690

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>L_VSVJH (P13615) Large structural protein (L protein) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2109

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 110 RNSTLANKTKHLICFPRKYSEQKTTKSNIVQEGYKL 217
           RN TL N TKH +C    ++ QK     + Q+G+ +
Sbjct: 659 RNGTLCNSTKHRVC----WNGQKGGLEGLRQKGWSI 690


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,048,391
Number of Sequences: 219361
Number of extensions: 1216557
Number of successful extensions: 4277
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 4079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4276
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result