ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CH60_PORPU (P51349) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 33 0.15
2FOLD_STRTR (P96050) FolD bifunctional protein [Includes: Methyle... 30 2.2
3NFYA3_ARATH (Q93ZH2) Nuclear transcription factor Y subunit A-3 ... 29 2.9

>CH60_PORPU (P51349) 60 kDa chaperonin (Protein Cpn60) (groEL protein)|
          Length = 528

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -3

Query: 165 TQDAG*DVCTVCVDFNWAGSHVPVTRPRMIWINDGEQGTLAGRCDQI 25
           T+DAG  + TV +D       V VT+     I DG + T+  RC+QI
Sbjct: 302 TEDAGFSLDTVQLDMLGKARRVVVTKDSTTIIADGHEATVKSRCEQI 348



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>FOLD_STRTR (P96050) FolD bifunctional protein [Includes:|
           Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
           Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)]
          Length = 284

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +2

Query: 8   PPDTHHIWSQRPASVPCSPS-LIQIIR 85
           P +T ++W+ RP  VPC+P+ +++I+R
Sbjct: 124 PMNTGNLWNGRPQMVPCTPAGIMEILR 150



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>NFYA3_ARATH (Q93ZH2) Nuclear transcription factor Y subunit A-3 (AtNF-YA-3)|
           (Transcriptional activator HAP2C)
          Length = 340

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 41  PASVPCSPSLIQIIRGRVTGTWLPAQLKSTHTVHTS*PASCVVSRYRFTRQKL 199
           P +  C+P ++ +I GRV    LPA+L  T  V  +      + R R  R KL
Sbjct: 152 PQAPTCNPQMVSMIPGRVP---LPAELTETDPVFVNAKQYHAIMRRRQQRAKL 201


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,926,915
Number of Sequences: 219361
Number of extensions: 678632
Number of successful extensions: 1459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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