ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl43h05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX005238.8| Zebrafish DNA sequence from clone DKEY-61P9 in linkage group 4 Contains three genes for a novel protein similar to vertebrate heat shock 70kDa protein 12A (Hspa12a), the gene for a novel protein similar to vertebrate guanylate nucleotide binding protein family, the gene for a novel protein containing a beta-ketoacyl synthase, N-terminal domain, six novel genes and five CpG islands, complete sequence Length = 166866 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 99 tcctatcattttgatcttcacat 121 ||||||||||||||||||||||| Sbjct: 148865 tcctatcattttgatcttcacat 148843
>ref|XM_681938.1| PREDICTED: Danio rerio similar to CG3523-PA (LOC558692), mRNA Length = 6891 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 99 tcctatcattttgatcttcacat 121 ||||||||||||||||||||||| Sbjct: 3501 tcctatcattttgatcttcacat 3479
>emb|AL935186.22| Zebrafish DNA sequence from clone CH211-250M6 in linkage group 4, complete sequence Length = 166476 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 99 tcctatcattttgatcttcacat 121 ||||||||||||||||||||||| Sbjct: 123154 tcctatcattttgatcttcacat 123132
>ref|XM_479538.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3406 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 ccgctcttcgctctctaccagagc 386 ||||||||||||||| |||||||| Sbjct: 2992 ccgctcttcgctctccaccagagc 2969
>ref|XM_844628.1| PREDICTED: Canis familiaris similar to ferredoxin reductase isoform 2 precursor, transcript variant 2 (LOC475910), mRNA Length = 1797 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 cgtggccgtgccggagctgc 424 |||||||||||||||||||| Sbjct: 351 cgtggccgtgccggagctgc 370
>ref|XM_533117.2| PREDICTED: Canis familiaris similar to ferredoxin reductase isoform 2 precursor, transcript variant 1 (LOC475910), mRNA Length = 1776 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 cgtggccgtgccggagctgc 424 |||||||||||||||||||| Sbjct: 351 cgtggccgtgccggagctgc 370
>gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, complete sequence Length = 131913 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 ctcccgctcctgctccaccggcac 341 ||||||||||||||||||| |||| Sbjct: 34883 ctcccgctcctgctccaccagcac 34860
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 ccgctcttcgctctctaccagagc 386 ||||||||||||||| |||||||| Sbjct: 28733307 ccgctcttcgctctccaccagagc 28733330
>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1205_F02 Length = 112862 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 ccgctcttcgctctctaccagagc 386 ||||||||||||||| |||||||| Sbjct: 40868 ccgctcttcgctctccaccagagc 40891
>dbj|AK101356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035A04, full insert sequence Length = 3406 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 ccgctcttcgctctctaccagagc 386 ||||||||||||||| |||||||| Sbjct: 2991 ccgctcttcgctctccaccagagc 2968
>gb|AC159374.2| Gallus gallus BAC clone CH261-5A10 from chromosome unknown, complete sequence Length = 245547 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gatgtcactggcactggcag 265 |||||||||||||||||||| Sbjct: 115964 gatgtcactggcactggcag 115983 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,729,959 Number of Sequences: 3902068 Number of extensions: 2729959 Number of successful extensions: 51583 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51547 Number of HSP's gapped (non-prelim): 36 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
