Clone Information

BLAST Search Result

Clone Name	rbastl43h04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS21_ORYSA (P35687) 40S ribosomal protein S21	159	1e-39
2	RS21_MAIZE (Q41852) 40S ribosomal protein S21	154	5e-38
3	RS21B_ARATH (Q9M337) 40S ribosomal protein S21-2	134	5e-32
4	RS21_CYAPA (Q9SMI2) 40S ribosomal protein S21	108	3e-24
5	RS21_ASPFU (Q4WI01) 40S ribosomal protein S21	103	1e-22
6	RS21_ASHGO (Q75BL6) 40S ribosomal protein S21	102	2e-22
7	RS21_KLULA (Q6CXT6) 40S ribosomal protein S21	100	1e-21
8	RS21A_YEAST (P0C0V8) 40S ribosomal protein S21-A (S26) (YS25)	96	3e-20
9	RS21B_YEAST (Q3E754) 40S ribosomal protein S21-B (S26)	95	4e-20
10	RS21_CANAL (Q9P844) 40S ribosomal protein S21	95	5e-20
11	RS21_CANGA (Q6FMF8) 40S ribosomal protein S21	94	8e-20
12	RS21_SCHPO (P05764) 40S ribosomal protein S21 (S28)	92	3e-19
13	RS21_ICTPU (Q90YQ2) 40S ribosomal protein S21	91	5e-19
14	RS21_BRARE (Q7ZUG5) 40S ribosomal protein S21	91	7e-19
15	RS21_NEUCR (O93798) 40S ribosomal protein S21 (CRP7)	90	1e-18
16	RS21_PIG (P63221) 40S ribosomal protein S21	88	6e-18
17	RS21_HUMAN (P63220) 40S ribosomal protein S21	88	6e-18
18	RS21_PECGU (Q6RF66) 40S ribosomal protein S21	87	7e-18
19	RS21_RAT (P05765) 40S ribosomal protein S21	87	1e-17
20	RS21_BRABE (Q86CT3) 40S ribosomal protein S21	87	1e-17
21	RS21_MOUSE (Q9CQR2) 40S ribosomal protein S21	87	1e-17
22	RS21_XENLA (Q6AZJ9) 40S ribosomal protein S21	86	2e-17
23	RS21_XENTR (Q6DDC6) 40S ribosomal protein S21	86	2e-17
24	RS21_SUBDO (Q4KTC0) 40S ribosomal protein S21	85	5e-17
25	RS21_IXOSC (Q4PM64) 40S ribosomal protein S21	79	3e-15
26	RS21_CERCA (Q8I7N7) 40S ribosomal protein S21	75	5e-14
27	RS21_CAEEL (P49197) 40S ribosomal protein S21	75	5e-14
28	RS21_CAEBR (Q612Q9) 40S ribosomal protein S21	73	2e-13
29	RS21_BIPLU (Q4GXP2) 40S ribosomal protein S21	72	2e-13
30	RS21_AGRLI (Q4GXP3) 40S ribosomal protein S21	70	9e-13
31	RS21_PLUXY (Q6F477) 40S ribosomal protein S21	69	4e-12
32	RS21_SPOFR (Q962Q8) 40S ribosomal protein S21	68	6e-12
33	RS21_BOMMO (Q6PUF8) 40S ribosomal protein S21	68	6e-12
34	ZN444_HUMAN (Q8N0Y2) Zinc finger protein 444 (Endothelial zinc f...	32	0.48
35	ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SC...	32	0.48
36	SOX17_HUMAN (Q9H6I2) Transcription factor SOX-17	29	2.4
37	CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 ...	29	2.4
38	ZN581_HUMAN (Q9P0T4) Zinc finger protein 581	29	3.1
39	WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1	28	4.1
40	CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 ...	28	4.1
41	RPI1_YEAST (P23250) Negative RAS protein regulator protein	28	5.3
42	5HTR_BOMMO (Q17239) 5-hydroxytryptamine receptor (5-HT receptor)...	28	5.3
43	SC10A_CANFA (O46669) Sodium channel protein type 10 alpha subuni...	28	5.3
44	ZNF18_HUMAN (P17022) Zinc finger protein 18 (Zinc finger protein...	28	6.9
45	CHD8_HUMAN (Q9HCK8) Chromodomain-helicase-DNA-binding protein 8 ...	28	6.9
46	ZNF18_RAT (Q642B9) Zinc finger protein 18 (Zinc finger protein 535)	28	6.9
47	ZNF18_MOUSE (Q810A1) Zinc finger protein 18 (Zinc finger protein...	28	6.9
48	PSAB_PSINU (P58765) Photosystem I P700 chlorophyll a apoprotein ...	27	9.0
49	PSAB_HUPLU (Q5SD11) Photosystem I P700 chlorophyll a apoprotein ...	27	9.0
50	DUS4_MOUSE (Q8BFV3) Dual specificity protein phosphatase 4 (EC 3...	27	9.0
51	ZN169_HUMAN (Q14929) Zinc finger protein 169	27	9.0
52	PSAB_CHLRE (P09144) Photosystem I P700 chlorophyll a apoprotein ...	27	9.0
53	CHD7_HUMAN (Q9P2D1) Chromodomain-helicase-DNA-binding protein 7 ...	27	9.0

>RS21_ORYSA (P35687) 40S ribosomal protein S21|
          Length = 82

 Score =  159 bits (403), Expect = 1e-39
 Identities = 76/81 (93%), Positives = 79/81 (97%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFVRA 183
           MQNEEG MVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGF+RA
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60

Query: 182 QGDADGSLDRLWQKKKAEVKQ 120
           QGDAD +LDRLWQK+KAEVKQ
Sbjct: 61  QGDADSALDRLWQKRKAEVKQ 81

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>RS21_MAIZE (Q41852) 40S ribosomal protein S21|
          Length = 81

 Score =  154 bits (389), Expect = 5e-38
 Identities = 74/81 (91%), Positives = 76/81 (93%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFVRA 183
           MQNEEG  VDLYVPRKCSATNRIITAKDHASVQINIGH+D NGLYDG FTTFALSGFVRA
Sbjct: 1   MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRA 60

Query: 182 QGDADGSLDRLWQKKKAEVKQ 120
           QGDAD SLDRLWQKKKAE+KQ
Sbjct: 61  QGDADSSLDRLWQKKKAEIKQ 81

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>RS21B_ARATH (Q9M337) 40S ribosomal protein S21-2|
          Length = 82

 Score =  134 bits (337), Expect = 5e-32
 Identities = 60/81 (74%), Positives = 71/81 (87%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFVRA 183
           M+N+ G + +LY+PRKCSATNR+IT+KDHASVQ+NIGH+D NGLY G+FTTFAL GFVRA
Sbjct: 1   MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 182 QGDADGSLDRLWQKKKAEVKQ 120
           QGDAD  +DRLWQKKK E KQ
Sbjct: 61  QGDADSGVDRLWQKKKVEAKQ 81

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>RS21_CYAPA (Q9SMI2) 40S ribosomal protein S21|
          Length = 82

 Score =  108 bits (270), Expect = 3e-24
 Identities = 51/75 (68%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDEN-GLYDGRFTTFALSGFVR 186
           MQN+EG +VDLY+PRKCSATNR+I+A DHA+VQIN+GHVD N GLY G +TTFAL GFVR
Sbjct: 1   MQNDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVR 60

Query: 185 AQGDADGSLDRLWQK 141
           + G++D +L+RL  K
Sbjct: 61  SMGESDAALNRLCVK 75

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>RS21_ASPFU (Q4WI01) 40S ribosomal protein S21|
          Length = 88

 Score =  103 bits (256), Expect = 1e-22
 Identities = 49/74 (66%), Positives = 61/74 (82%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFVRA 183
           M+NE+G +VDLYVPRKCSATNRII A DHASVQI+I  VDENG Y G   ++AL GF+RA
Sbjct: 1   MENEKGEIVDLYVPRKCSATNRIIKANDHASVQISIAKVDENGRYTGENQSYALCGFIRA 60

Query: 182 QGDADGSLDRLWQK 141
           +G++D SL+RL Q+
Sbjct: 61  RGESDDSLNRLCQR 74

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>RS21_ASHGO (Q75BL6) 40S ribosomal protein S21|
          Length = 87

 Score =  102 bits (254), Expect = 2e-22
 Identities = 50/75 (66%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENG-LYDGRFTTFALSGFVR 186
           M+N++G +V+LYVPRKCSATNRII AKDH SVQINI  VDENG    G + T+ALSG+VR
Sbjct: 1   MENDKGQLVELYVPRKCSATNRIIKAKDHGSVQINIAQVDENGHAVPGEYITYALSGYVR 60

Query: 185 AQGDADGSLDRLWQK 141
           A+G+AD S++RL QK
Sbjct: 61  ARGEADDSMNRLAQK 75

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>RS21_KLULA (Q6CXT6) 40S ribosomal protein S21|
          Length = 87

 Score = 99.8 bits (247), Expect = 1e-21
 Identities = 48/75 (64%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENG-LYDGRFTTFALSGFVR 186
           M+N++G +V+LYVPRKCSATNRII AKDH+SVQINI  VDE G    G + T+ALSG++R
Sbjct: 1   MENDKGQLVELYVPRKCSATNRIIKAKDHSSVQINIAQVDEEGRAIPGEYVTYALSGYIR 60

Query: 185 AQGDADGSLDRLWQK 141
           A+G+AD SL+RL Q+
Sbjct: 61  ARGEADDSLNRLAQQ 75

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>RS21A_YEAST (P0C0V8) 40S ribosomal protein S21-A (S26) (YS25)|
          Length = 87

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 46/74 (62%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENG-LYDGRFTTFALSGFVR 186
           M+N++G +V+LYVPRKCSATNRII A DHASVQIN+  VDE G    G + T+ALSG+VR
Sbjct: 1   MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVR 60

Query: 185 AQGDADGSLDRLWQ 144
           ++G++D SL+RL Q
Sbjct: 61  SRGESDDSLNRLAQ 74

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>RS21B_YEAST (Q3E754) 40S ribosomal protein S21-B (S26)|
          Length = 87

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 46/74 (62%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENG-LYDGRFTTFALSGFVR 186
           M+N++G +V+LYVPRKCSATNRII A DHASVQIN+  VDE G    G + T+ALSG+VR
Sbjct: 1   MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYITYALSGYVR 60

Query: 185 AQGDADGSLDRLWQ 144
           ++G++D SL+RL Q
Sbjct: 61  SRGESDDSLNRLAQ 74

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>RS21_CANAL (Q9P844) 40S ribosomal protein S21|
          Length = 87

 Score = 94.7 bits (234), Expect = 5e-20
 Identities = 48/75 (64%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENG-LYDGRFTTFALSGFVR 186
           M+N++G +V+LYVPRKCSATNRII AKDHASVQI+I  VDE+G    G   T+ALSG+VR
Sbjct: 1   MENDKGQLVELYVPRKCSATNRIIKAKDHASVQISIAKVDEDGRAIAGENITYALSGYVR 60

Query: 185 AQGDADGSLDRLWQK 141
            +G+AD SL+RL Q+
Sbjct: 61  GRGEADDSLNRLAQQ 75

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>RS21_CANGA (Q6FMF8) 40S ribosomal protein S21|
          Length = 87

 Score = 94.0 bits (232), Expect = 8e-20
 Identities = 47/74 (63%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENG-LYDGRFTTFALSGFVR 186
           M+N++G +V+LY+PRKCSATNRII A DHASVQINI  VDE G    G + T+ALSG VR
Sbjct: 1   MENDKGQLVELYIPRKCSATNRIIKADDHASVQINIAKVDEEGRAIPGEYITYALSGNVR 60

Query: 185 AQGDADGSLDRLWQ 144
           A+G++D SL+RL Q
Sbjct: 61  ARGESDDSLNRLAQ 74

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>RS21_SCHPO (P05764) 40S ribosomal protein S21 (S28)|
          Length = 87

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 46/72 (63%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENG-LYDGRFTTFALSGFVR 186
           M+NE G +VDLYVPRKCSATNRII AKDHASVQIN+  VD  G    G  TT+A+SGFVR
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVDAEGRQIPGEKTTYAISGFVR 60

Query: 185 AQGDADGSLDRL 150
           ++G++D  ++RL
Sbjct: 61  SKGESDDCINRL 72

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>RS21_ICTPU (Q90YQ2) 40S ribosomal protein S21|
          Length = 83

 Score = 91.3 bits (225), Expect = 5e-19
 Identities = 45/72 (62%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDE-NGLYDGRFTTFALSGFVR 186
           MQN+ G  VDLYVPRKCSA+NRII AKDHAS+QINI  VD+  G ++G+F T+A+ G +R
Sbjct: 1   MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNGQFKTYAICGAIR 60

Query: 185 AQGDADGSLDRL 150
             G+AD SL RL
Sbjct: 61  RMGEADDSLLRL 72

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>RS21_BRARE (Q7ZUG5) 40S ribosomal protein S21|
          Length = 81

 Score = 90.9 bits (224), Expect = 7e-19
 Identities = 45/72 (62%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDE-NGLYDGRFTTFALSGFVR 186
           MQN+ G  VDLYVPRKCSA+NRII AKDHAS+QINI  VD   G ++G+F T+A+ G +R
Sbjct: 1   MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDRVTGRFNGQFKTYAICGAIR 60

Query: 185 AQGDADGSLDRL 150
             G+AD SL RL
Sbjct: 61  RMGEADDSLLRL 72

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>RS21_NEUCR (O93798) 40S ribosomal protein S21 (CRP7)|
          Length = 87

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 46/75 (61%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENG-LYDGRFTTFALSGFVR 186
           M+N+ G +VDLYVPRKCSAT RII +KDH S QI I  VDENG    G    +ALSGFVR
Sbjct: 1   MENDRGEIVDLYVPRKCSATGRIIKSKDHGSCQITIAKVDENGRAIQGENIIYALSGFVR 60

Query: 185 AQGDADGSLDRLWQK 141
           A G++D SL+RL Q+
Sbjct: 61  AMGESDDSLNRLAQR 75

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>RS21_PIG (P63221) 40S ribosomal protein S21|
          Length = 83

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 41/72 (56%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDE-NGLYDGRFTTFALSGFVR 186
           MQN+ G  VDLYVPRKCSA+NRII AKDHAS+Q+N+  VD+  G ++G+F T+A+ G +R
Sbjct: 1   MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60

Query: 185 AQGDADGSLDRL 150
             G++D S+ RL
Sbjct: 61  RMGESDDSILRL 72

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>RS21_HUMAN (P63220) 40S ribosomal protein S21|
          Length = 83

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 41/72 (56%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDE-NGLYDGRFTTFALSGFVR 186
           MQN+ G  VDLYVPRKCSA+NRII AKDHAS+Q+N+  VD+  G ++G+F T+A+ G +R
Sbjct: 1   MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60

Query: 185 AQGDADGSLDRL 150
             G++D S+ RL
Sbjct: 61  RMGESDDSILRL 72

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>RS21_PECGU (Q6RF66) 40S ribosomal protein S21|
          Length = 85

 Score = 87.4 bits (215), Expect = 7e-18
 Identities = 42/77 (54%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFVR 186
           MQN++G +VD+Y+PRKCSATN I+ AKDHASVQIN+  +D + G   G+  T+AL G +R
Sbjct: 1   MQNDQGEIVDVYIPRKCSATNNILAAKDHASVQINMAEIDPQTGRMTGKQITYALCGELR 60

Query: 185 AQGDADGSLDRLWQKKK 135
             G+AD S++RL  K K
Sbjct: 61  RMGEADDSVNRLAMKDK 77

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>RS21_RAT (P05765) 40S ribosomal protein S21|
          Length = 83

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 40/72 (55%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDEN-GLYDGRFTTFALSGFVR 186
           MQN+ G  VDLYVPRKCSA+NRII AKDHAS+Q+N+  VD + G ++G+F T+ + G +R
Sbjct: 1   MQNDAGEFVDLYVPRKCSASNRIIAAKDHASIQMNVAEVDRSTGRFNGQFKTYGICGAIR 60

Query: 185 AQGDADGSLDRL 150
             G++D S+ RL
Sbjct: 61  RMGESDDSILRL 72

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>RS21_BRABE (Q86CT3) 40S ribosomal protein S21|
          Length = 85

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFVR 186
           MQN+ G +VDLY+PRKCS+TNRII AKDHAS+QIN   VD   G   G++ T+A+ G++R
Sbjct: 1   MQNDAGEVVDLYIPRKCSSTNRIIGAKDHASIQINFAEVDPTTGRMTGQYKTYAICGYIR 60

Query: 185 AQGDADGSLDRLWQKKK 135
             G++D  L RL  K K
Sbjct: 61  QMGESDDCLKRLAIKDK 77

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>RS21_MOUSE (Q9CQR2) 40S ribosomal protein S21|
          Length = 83

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 40/72 (55%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDE-NGLYDGRFTTFALSGFVR 186
           MQN+ G  VDLYVPRKCSA+NRII AKDHAS+Q+N+  VD   G ++G+F T+ + G +R
Sbjct: 1   MQNDAGEFVDLYVPRKCSASNRIIAAKDHASIQMNVAEVDRTTGRFNGQFKTYGICGAIR 60

Query: 185 AQGDADGSLDRL 150
             G++D S+ RL
Sbjct: 61  RMGESDDSILRL 72

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>RS21_XENLA (Q6AZJ9) 40S ribosomal protein S21|
          Length = 83

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 41/72 (56%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDE-NGLYDGRFTTFALSGFVR 186
           MQN+ G  VDLYVPRKCSA+NRII AKDHAS+QINI  VD+  G ++ ++ T+A+ G +R
Sbjct: 1   MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNSQYKTYAICGAIR 60

Query: 185 AQGDADGSLDRL 150
             G++D S+ RL
Sbjct: 61  RMGESDDSIMRL 72

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>RS21_XENTR (Q6DDC6) 40S ribosomal protein S21|
          Length = 83

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 41/72 (56%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDE-NGLYDGRFTTFALSGFVR 186
           MQN+ G  VDLYVPRKCSA+NRII AKDHAS+QINI  VD+  G ++ ++ T+A+ G +R
Sbjct: 1   MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNSQYKTYAICGAIR 60

Query: 185 AQGDADGSLDRL 150
             G++D S+ RL
Sbjct: 61  RMGESDDSILRL 72

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>RS21_SUBDO (Q4KTC0) 40S ribosomal protein S21|
          Length = 86

 Score = 84.7 bits (208), Expect = 5e-17
 Identities = 41/72 (56%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDE-NGLYDGRFTTFALSGFVR 186
           MQNE G  VD+Y+PRKCSA+ RII A+D+A+VQ+NI  VDE  G   G F T+A+SGF+R
Sbjct: 1   MQNEAGETVDVYIPRKCSASGRIIGARDYAAVQLNIADVDEKTGRVTGGFKTYAVSGFIR 60

Query: 185 AQGDADGSLDRL 150
           A G++D  L R+
Sbjct: 61  AMGESDDCLHRI 72

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>RS21_IXOSC (Q4PM64) 40S ribosomal protein S21|
          Length = 83

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDE-NGLYDGRFTTFALSGFVR 186
           MQNE G  VDLY+PRKCS +NRII AKDHAS+QIN+  VDE +G   G    +A+ G +R
Sbjct: 1   MQNEAGEYVDLYIPRKCSTSNRIIHAKDHASIQINLAIVDEQSGRATGETKPYAICGAIR 60

Query: 185 AQGDADGSLDRL 150
             G++D  + RL
Sbjct: 61  RMGESDDCITRL 72

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>RS21_CERCA (Q8I7N7) 40S ribosomal protein S21|
          Length = 83

 Score = 74.7 bits (182), Expect = 5e-14
 Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFVR 186
           M+N+ G  VDLY PRKCSA+NRII AKDHASVQ+NI  VD E G       T+A+ G +R
Sbjct: 1   MENDAGESVDLYCPRKCSASNRIIHAKDHASVQLNIVDVDPETGRMTVGSKTYAICGEIR 60

Query: 185 AQGDADGSLDRLWQK 141
             G++D  + RL +K
Sbjct: 61  RMGESDDCIVRLAKK 75

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>RS21_CAEEL (P49197) 40S ribosomal protein S21|
          Length = 88

 Score = 74.7 bits (182), Expect = 5e-14
 Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENG-LYDGRFTTFALSGFV 189
           MQN+ G  V+LYVPRKCS++NRII  KDHASVQI+   VD E G +  G+ T +A+ G +
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 188 RAQGDADGSLDRLWQK 141
           R  G++D ++ RL QK
Sbjct: 61  RRMGESDDAILRLAQK 76

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>RS21_CAEBR (Q612Q9) 40S ribosomal protein S21|
          Length = 88

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENG-LYDGRFTTFALSGFV 189
           MQN+ G  V+LYVPRKCS++NRII  KDHA+VQI+   VD E G +  G+ T +A+ G +
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHAAVQIDFVDVDPETGRMIPGKSTRYAICGAL 60

Query: 188 RAQGDADGSLDRLWQK 141
           R  G++D ++ RL QK
Sbjct: 61  RRMGESDDAILRLAQK 76

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>RS21_BIPLU (Q4GXP2) 40S ribosomal protein S21|
          Length = 83

 Score = 72.4 bits (176), Expect = 2e-13
 Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFVR 186
           M+N+ G  VDLY PRKCSA+NRII AKDHAS+Q+ +  VD + G       ++AL G +R
Sbjct: 1   MENDAGEFVDLYCPRKCSASNRIIHAKDHASIQLCVAEVDPQTGRMTDSTKSYALCGAIR 60

Query: 185 AQGDADGSLDRLWQK 141
             G++D  + RL +K
Sbjct: 61  RMGESDDCIVRLTKK 75

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>RS21_AGRLI (Q4GXP3) 40S ribosomal protein S21|
          Length = 83

 Score = 70.5 bits (171), Expect = 9e-13
 Identities = 36/75 (48%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGH-VDENGLYDGRFTTFALSGFVR 186
           M+N+ G  VDLY PRKCSA+NRII AKDHAS+Q++I   V   G       ++AL G +R
Sbjct: 1   MENDAGEFVDLYCPRKCSASNRIIHAKDHASIQLSIAEVVPATGRMTENTKSYALCGAIR 60

Query: 185 AQGDADGSLDRLWQK 141
             G++D  + RL +K
Sbjct: 61  RMGESDDCIVRLTKK 75

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>RS21_PLUXY (Q6F477) 40S ribosomal protein S21|
          Length = 83

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFVR 186
           MQN+ G  VDLY PRKCSA+NR+I AKDHASVQ+ I  VD   G        + + G +R
Sbjct: 1   MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIR 60

Query: 185 AQGDADGSLDRLWQKKKAEVK 123
             G++D  + RL +K    VK
Sbjct: 61  RMGESDDCIVRLTKKDGILVK 81

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>RS21_SPOFR (Q962Q8) 40S ribosomal protein S21|
          Length = 83

 Score = 67.8 bits (164), Expect = 6e-12
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFVR 186
           MQN+ G  VDLY PRKCSA+NR+I AKDHASVQ+ I  VD   G        + + G +R
Sbjct: 1   MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60

Query: 185 AQGDADGSLDRLWQK 141
             G++D  + RL +K
Sbjct: 61  RMGESDDCIVRLTKK 75

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>RS21_BOMMO (Q6PUF8) 40S ribosomal protein S21|
          Length = 83

 Score = 67.8 bits (164), Expect = 6e-12
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = -2

Query: 362 MQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFVR 186
           MQN+ G  VDLY PRKCSA+NR+I AKDHASVQ+ I  VD   G        + + G +R
Sbjct: 1   MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60

Query: 185 AQGDADGSLDRLWQK 141
             G++D  + RL +K
Sbjct: 61  RMGESDDCIVRLTKK 75

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>ZN444_HUMAN (Q8N0Y2) Zinc finger protein 444 (Endothelial zinc finger protein|
           2) (EZF-2) (Zinc finger and SCAN domain-containing
           protein 17)
          Length = 327

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 330 LRPQEVLRHQQDHHGQGPCLCPD 262
           L+P  +LRH+Q H G+ P  CP+
Sbjct: 189 LKPAHLLRHRQSHSGEKPHACPE 211

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>ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SCAN|
           domain-containing protein 10)
          Length = 725

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 393 LLCHFPSSCHHAE*GGSHGGPLRPQEVLRHQQDHHGQGPCLCPD 262
           LL H     HH    G   G  + Q++ RHQ+ H G+ PC C +
Sbjct: 542 LLTHGGPRPHHCTQCGKSFG--QTQDLARHQRSHTGEKPCRCSE 583

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>SOX17_HUMAN (Q9H6I2) Transcription factor SOX-17|
          Length = 414

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 351 GGSHGGPLRPQEVLRHQQDHHGQGP 277
           GG  G  ++PQ   +HQ  HH  GP
Sbjct: 306 GGGRGFQMQPQHQHQHQHQHHPPGP 330

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>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -2

Query: 227  DGRFTTFALSGFVRAQGDADGSLD--RLWQK--KKAEV 126
            +GR +TFA + FV +    D SLD    WQK  KKAE+
Sbjct: 1395 EGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEI 1432

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>ZN581_HUMAN (Q9P0T4) Zinc finger protein 581|
          Length = 197

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = -1

Query: 372 SCHHAE*GGSHGGPLRPQ------EVLRHQQDHHGQGPCLCP 265
           S H A  G  HG PL P+      E+ +H + H G+ P  CP
Sbjct: 135 SIHLAGGGRPHGCPLCPRRFRDAGELAQHSRVHSGERPFQCP 176

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>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = -2

Query: 377 PPAATMQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDEN 237
           PP++++  E+ A +  Y+P+   +TN+II A   A V++ + + D N
Sbjct: 2   PPSSSITQEDKATIRKYIPK---STNKIIAA---AVVKLYVAYPDPN 42

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>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal
            proliferator-activated receptor A-interacting complex 320
            kDa protein) (PPAR-alpha-interacting complex protein 320
            kDa)
          Length = 2885

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -2

Query: 227  DGRFTTFALSGFVRAQGDADGSLD--RLWQK--KKAEV 126
            +GR +TFA + FV +    D SLD    WQK  KKAE+
Sbjct: 1394 EGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEL 1431

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>RPI1_YEAST (P23250) Negative RAS protein regulator protein|
          Length = 407

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 380 SPPAATMQNEEGAMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGL 231
           +P  +    E G+   L  PR  S++N    +  +++   N G +DEN L
Sbjct: 32  TPITSNFNEETGSDCSLVTPRIISSSNSNSNSNSNSNSNSNSGSIDENEL 81

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>5HTR_BOMMO (Q17239) 5-hydroxytryptamine receptor (5-HT receptor) (Serotonin|
           receptor)
          Length = 446

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 296 SCWWRSTSWGRRGPPWLPPHSAWWQ 370
           +C W ST W       + P++ WWQ
Sbjct: 23  NCSWNSTGWEPNWNVTVVPNTTWWQ 47

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>SC10A_CANFA (O46669) Sodium channel protein type 10 alpha subunit (Sodium|
           channel protein type X alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.8) (NaNG)
          Length = 1962

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 291 DDPVGGGALPGDVEVHHGSLLILHGGSWRG 380
           D     G  PGD E H GSLL+  G S +G
Sbjct: 527 DGVTDDGVFPGDRESHRGSLLLGGGTSQQG 556

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>ZNF18_HUMAN (P17022) Zinc finger protein 18 (Zinc finger protein KOX11) (Heart|
           development-specific gene 1 protein)
          Length = 549

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 330 LRPQEVLRHQQDHHGQGPCLC 268
           LR  + ++HQ+ H G+ PC C
Sbjct: 446 LRSSDFVKHQRTHTGEKPCKC 466

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>CHD8_HUMAN (Q9HCK8) Chromodomain-helicase-DNA-binding protein 8 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD8) (CHD-8) (Helicase with SNF2
            domain 1)
          Length = 2302

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -2

Query: 227  DGRFTTFALSGFVRAQGDADGSLD--RLWQK--KKAEV 126
            +G+ +TFA + FV ++   D SLD    WQK  KKA++
Sbjct: 1067 EGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKADL 1104

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>ZNF18_RAT (Q642B9) Zinc finger protein 18 (Zinc finger protein 535)|
          Length = 556

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 330 LRPQEVLRHQQDHHGQGPCLC 268
           LR  + ++HQ+ H G+ PC C
Sbjct: 453 LRSSDFVKHQRTHTGEKPCKC 473

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>ZNF18_MOUSE (Q810A1) Zinc finger protein 18 (Zinc finger protein 535)|
          Length = 556

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 330 LRPQEVLRHQQDHHGQGPCLC 268
           LR  + ++HQ+ H G+ PC C
Sbjct: 453 LRSSDFVKHQRTHTGEKPCKC 473

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>PSAB_PSINU (P58765) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 734

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 117 LNVASSFTWNLFPSHVYLALGCMFLVSVRCYY 22
           +N  S + W     H+  A+G MFL+S R Y+
Sbjct: 640 MNSLSVWAWMFLFGHLVWAIGFMFLISWRGYW 671

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>PSAB_HUPLU (Q5SD11) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 734

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 117 LNVASSFTWNLFPSHVYLALGCMFLVSVRCYY 22
           +N  S + W     H+  A+G MFL+S R Y+
Sbjct: 640 MNSLSVWAWMFLFGHLVWAIGFMFLISWRGYW 671

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>DUS4_MOUSE (Q8BFV3) Dual specificity protein phosphatase 4 (EC 3.1.3.48) (EC|
           3.1.3.16)
          Length = 398

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 279 VLGRDDPVGGGALPGDVEVHHGSLLILHGG 368
           ++ RD+  GGG+  G+    HG+L +L GG
Sbjct: 18  LMNRDENGGGGSAGGNGSGSHGALGLLSGG 47

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>ZN169_HUMAN (Q14929) Zinc finger protein 169|
          Length = 590

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 318 EVLRHQQDHHGQGPCLCPD 262
           ++++HQ+ H G+ P LCP+
Sbjct: 235 DLIKHQRTHTGEKPYLCPE 253

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>PSAB_CHLRE (P09144) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 735

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 117 LNVASSFTWNLFPSHVYLALGCMFLVSVRCYY 22
           +N  S + W     H+  A G MFL+S R Y+
Sbjct: 641 MNSLSVWAWTFLFGHLIYATGFMFLISWRGYW 672

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>CHD7_HUMAN (Q9P2D1) Chromodomain-helicase-DNA-binding protein 7 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD7) (CHD-7) (Fragment)
          Length = 2235

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -2

Query: 227 DGRFTTFALSGFVRAQGDADGSLD--RLWQK--KKAEV 126
           +G+ +TFA + FV +    D SLD    WQK  KKAE+
Sbjct: 741 EGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEL 778


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,093,732
Number of Sequences: 219361
Number of extensions: 1029977
Number of successful extensions: 3736
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 3094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3720
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result