ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MRPD_BACSU (O05229) Na(+)/H(+) antiporter subunit D (Multiple re... 30 3.2
2CP312_DROME (Q9VVN6) Probable cytochrome P450 312a1 (EC 1.14.-.-... 28 9.4
3MURC_BUCAI (P57310) UDP-N-acetylmuramate--L-alanine ligase (EC 6... 28 9.4

>MRPD_BACSU (O05229) Na(+)/H(+) antiporter subunit D (Multiple resistance and|
           pH homeostasis protein D) (Mrp complex subunit D)
          Length = 493

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 129 NILFFLNAELCASNTILLTRHSFWENEEENPQTTFQHGKASVYP 260
           ++L  L++ L   + + +  H+FW  E+E P+   +  K  +YP
Sbjct: 408 SMLILLSSLLVLYSVLRIFIHAFWGEEKETPKPNHRTAKGLLYP 451



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>CP312_DROME (Q9VVN6) Probable cytochrome P450 312a1 (EC 1.14.-.-) (CYPCCCXIIA1)|
          Length = 510

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 270 PTELKFTGKIS*LAKLIIP*ELR*LPKLFMVQLDLQKLXAWLTTPVILID 419
           P  L F G +  LAKL+ P  LR   ++    L   +   W+ T + L+D
Sbjct: 37  PPALPFIGHLHILAKLVGPHPLRRATEMINEHLHDHRAKLWMGTKLYLVD 86



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>MURC_BUCAI (P57310) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 484

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 290 GKNILTC*ANHPMRVEVVTQTLHGTA*SPKAXSMVDNAGNFD 415
           GKN +T  +NH M ++ + QTL G         ++  AGN D
Sbjct: 432 GKNYVTLISNHNMILDTLIQTLQG-----NDIILIQGAGNID 468


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,721,305
Number of Sequences: 219361
Number of extensions: 1263264
Number of successful extensions: 3209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3198
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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