ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior... 28 6.9

>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)|
          Length = 1601

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +2

Query: 5   PSRPSISHFREVA---FEVDTQHSQINIIYKRKAIV 103
           P+   +SH ++     FE+D Q   I+I+YK K IV
Sbjct: 403 PAMCRVSHLKKFVYDKFEIDAQRFSIDIMYKVKTIV 438


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,429,734
Number of Sequences: 219361
Number of extensions: 243630
Number of successful extensions: 453
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 80,573,946
effective HSP length: 27
effective length of database: 74,651,199
effective search space used: 1791628776
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top