Clone Name | rbastl43h01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 Score = 48.1 bits (24), Expect = 0.008 Identities = 27/28 (96%) Strand = Plus / Minus Query: 27 atttcagagaagttgcttttgaagtgga 54 |||||||||||||| ||||||||||||| Sbjct: 10920 atttcagagaagtttcttttgaagtgga 10893
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 48.1 bits (24), Expect = 0.008 Identities = 27/28 (96%) Strand = Plus / Minus Query: 27 atttcagagaagttgcttttgaagtgga 54 |||||||||||||| ||||||||||||| Sbjct: 22274 atttcagagaagtttcttttgaagtgga 22247
>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete sequence Length = 121915 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 126 catttgaattttctataaatgt 147 |||||||||||||||||||||| Sbjct: 75708 catttgaattttctataaatgt 75687
>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence Length = 81567 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 atttgaattttctataaatgt 147 ||||||||||||||||||||| Sbjct: 74176 atttgaattttctataaatgt 74196
>gb|AC124558.4| Mus musculus BAC clone RP23-248O8 from chromosome 10, complete sequence Length = 199938 Score = 42.1 bits (21), Expect = 0.48 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ggccaagtataagtcatttcagaga 36 ||||||||| ||||||||||||||| Sbjct: 7822 ggccaagtagaagtcatttcagaga 7846
>emb|AL645564.6| Mouse DNA sequence from clone RP23-35N22 on chromosome 11 Contains part of a novel gene and two CpG islands, complete sequence Length = 205101 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 tcatttcagagaagttgcttt 45 ||||||||||||||||||||| Sbjct: 111642 tcatttcagagaagttgcttt 111662
>gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, complete sequence Length = 168521 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 attttctataaatgtgacatt 153 ||||||||||||||||||||| Sbjct: 1961 attttctataaatgtgacatt 1981
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 cactcacagatcaacatcatt 82 ||||||||||||||||||||| Sbjct: 18717892 cactcacagatcaacatcatt 18717872
>gb|AC158687.2| Mus musculus 10 BAC RP24-423N13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 154559 Score = 42.1 bits (21), Expect = 0.48 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ggccaagtataagtcatttcagaga 36 ||||||||| ||||||||||||||| Sbjct: 132926 ggccaagtagaagtcatttcagaga 132950
>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence Length = 155354 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 attttctataaatgtgacatt 153 ||||||||||||||||||||| Sbjct: 23774 attttctataaatgtgacatt 23794
>dbj|AP005492.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0077L03 Length = 171177 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 cactcacagatcaacatcatt 82 ||||||||||||||||||||| Sbjct: 43643 cactcacagatcaacatcatt 43623
>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 186915 Score = 42.1 bits (21), Expect = 0.48 Identities = 24/25 (96%) Strand = Plus / Minus Query: 128 tttgaattttctataaatgtgacat 152 |||||| |||||||||||||||||| Sbjct: 132214 tttgaaatttctataaatgtgacat 132190
>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence Length = 203728 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ccatttgaattttctataaa 144 |||||||||||||||||||| Sbjct: 23208 ccatttgaattttctataaa 23189
>emb|BX324134.11| Zebrafish DNA sequence from clone DKEY-103K8 in linkage group 6, complete sequence Length = 219514 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ataagtcatttcagagaagt 39 |||||||||||||||||||| Sbjct: 171568 ataagtcatttcagagaagt 171549
>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA (Snap), mRNA Length = 2069 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gaattttctataaatgtgac 150 |||||||||||||||||||| Sbjct: 1762 gaattttctataaatgtgac 1743
>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185918 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gaattttctataaatgtgac 150 |||||||||||||||||||| Sbjct: 106242 gaattttctataaatgtgac 106223
>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence Length = 143516 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 tgaattttctataaatgtga 149 |||||||||||||||||||| Sbjct: 121095 tgaattttctataaatgtga 121076
>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172507 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 catttgaattttctataaat 145 |||||||||||||||||||| Sbjct: 161099 catttgaattttctataaat 161080
>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA Length = 2054 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gaattttctataaatgtgac 150 |||||||||||||||||||| Sbjct: 1730 gaattttctataaatgtgac 1711
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete sequence Length = 299903 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gaattttctataaatgtgac 150 |||||||||||||||||||| Sbjct: 288396 gaattttctataaatgtgac 288377
>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence Length = 198582 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 tgaattttctataaatgtga 149 |||||||||||||||||||| Sbjct: 63377 tgaattttctataaatgtga 63358
>gb|AC173477.2| Mus musculus BAC clone RP24-344P5 from chromosome 17, complete sequence Length = 155999 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gccaagtataagtcatttcagaga 36 |||||||||||| ||||||||||| Sbjct: 122000 gccaagtataagccatttcagaga 122023
>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete cds Length = 2038 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gaattttctataaatgtgac 150 |||||||||||||||||||| Sbjct: 1718 gaattttctataaatgtgac 1699
>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete sequence Length = 216415 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tttgaattttctataaatgt 147 |||||||||||||||||||| Sbjct: 104442 tttgaattttctataaatgt 104461
>emb|AL589870.30| Mouse DNA sequence from clone RP23-118A2 on chromosome 2, complete sequence Length = 202686 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gtggacactcaacactcaca 69 |||||||||||||||||||| Sbjct: 191713 gtggacactcaacactcaca 191732
>ref|XM_636497.1| Dictyostelium discoideum hypothetical protein (DDB0205976), partial mRNA Length = 1605 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 ttcattgtcccatttgaat 134 ||||||||||||||||||| Sbjct: 366 ttcattgtcccatttgaat 348
>gb|AC165258.2| Mus musculus BAC clone RP23-127F20 from chromosome 17, complete sequence Length = 203927 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 128 tttgaattttctataaatg 146 ||||||||||||||||||| Sbjct: 95019 tttgaattttctataaatg 95037
>ref|XM_475051.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3204 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 2327 agagaagtttcttttgaagtgga 2305
>ref|NM_191752.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2721 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 133 attttctataaatgtgaca 151 ||||||||||||||||||| Sbjct: 2373 attttctataaatgtgaca 2355
>gb|U32514.1|HSMXI1S3 Homo sapiens max interactor 1 (MXI1) gene, exon 3 Length = 478 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 105 gaaactggagtttcattgt 123 ||||||||||||||||||| Sbjct: 25 gaaactggagtttcattgt 7
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 gaaccctcaaggccaagta 20 ||||||||||||||||||| Sbjct: 1227906 gaaccctcaaggccaagta 1227924
>gb|AC102497.7| Mus musculus chromosome 18, clone RP24-570C15, complete sequence Length = 165977 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 tttctataaatgtgacatt 153 ||||||||||||||||||| Sbjct: 45225 tttctataaatgtgacatt 45243
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 21566 agagaagtttcttttgaagtgga 21544
>ref|XM_707442.1| Candida albicans SC5314 putative cytosolic ribosomal protein L1 (CaO19.10969), mRNA Length = 654 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 attgtgagaaactggagtt 116 ||||||||||||||||||| Sbjct: 423 attgtgagaaactggagtt 405
>ref|XM_707412.1| Candida albicans SC5314 putative cytosolic ribosomal protein L1 (CaO19.3465), mRNA Length = 654 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 attgtgagaaactggagtt 116 ||||||||||||||||||| Sbjct: 423 attgtgagaaactggagtt 405
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 21566 agagaagtttcttttgaagtgga 21544
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 21524 agagaagtttcttttgaagtgga 21502
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 143596 agagaagtttcttttgaagtgga 143574
>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0508G08, complete sequence Length = 141383 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 6683 agagaagtttcttttgaagtgga 6661
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 17957235 agagaagtttcttttgaagtgga 17957257
>gb|AC120856.6| Mus musculus chromosome 1, clone RP23-284B21, complete sequence Length = 261249 Score = 38.2 bits (19), Expect = 7.5 Identities = 28/30 (93%), Gaps = 2/30 (6%) Strand = Plus / Minus Query: 104 agaaactggagtttcatt--gtcccatttg 131 |||||||||||||||||| |||||||||| Sbjct: 53656 agaaactggagtttcattaggtcccatttg 53627
>gb|AC099041.7| Oryza sativa chromosome 3 BAC OSJNBa0036E17 genomic sequence, complete sequence Length = 142896 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 65057 agagaagtttcttttgaagtgga 65035
>gb|AC139934.9| Mus musculus chromosome 12, clone RP23-39G14, complete sequence Length = 312488 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 tgaattttctataaatgtg 148 ||||||||||||||||||| Sbjct: 281166 tgaattttctataaatgtg 281184
>ref|XM_571100.1| Cryptococcus neoformans var. neoformans JEC21 fatty-acid synthase complex protein (CNE04370) partial mRNA Length = 7692 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 gaaccctcaaggccaagta 20 ||||||||||||||||||| Sbjct: 6446 gaaccctcaaggccaagta 6464
>gb|AC123867.4| Mus musculus BAC clone RP23-127O13 from chromosome 14, complete sequence Length = 216834 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 101 gtgagaaactggagtttca 119 ||||||||||||||||||| Sbjct: 78487 gtgagaaactggagtttca 78469
>emb|Z69885.1|CET04C10 Caenorhabditis elegans Cosmid T04C10, complete sequence Length = 20958 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 acactcaacactcacagat 72 ||||||||||||||||||| Sbjct: 10014 acactcaacactcacagat 9996
>gb|AC098744.3| Mus musculus BAC clone RP23-122P15 from 8, complete sequence Length = 204779 Score = 38.2 bits (19), Expect = 7.5 Identities = 28/30 (93%), Gaps = 2/30 (6%) Strand = Plus / Minus Query: 104 agaaactggagtttcatt--gtcccatttg 131 |||||||||||||||||| |||||||||| Sbjct: 100540 agaaactggagtttcattaggtcccatttg 100511
>gb|AC115785.9| Mus musculus chromosome 12, clone RP23-170K17, complete sequence Length = 261721 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 tgaattttctataaatgtg 148 ||||||||||||||||||| Sbjct: 87372 tgaattttctataaatgtg 87390
>gb|AC006151.4| Homo sapiens BAC clone GS1-286B23 from 7, complete sequence Length = 136006 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 tgaattttctataaatgtg 148 ||||||||||||||||||| Sbjct: 12048 tgaattttctataaatgtg 12030
>gb|AC158684.7| Mus musculus 6 BAC RP23-332N21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210307 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 gaagtggacactcaacact 65 ||||||||||||||||||| Sbjct: 170547 gaagtggacactcaacact 170529
>emb|AL627143.13| Human DNA sequence from clone RP11-14O9 on chromosome X Contains the 3' end of the RP2 gene for retinitis pigmentosa 2 (X-linked recessive), a novel gene, the 5' end of a novel gene (KIAA0215) and a CpG island, complete sequence Length = 81195 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 129 ttgaattttctataaatgt 147 ||||||||||||||||||| Sbjct: 1837 ttgaattttctataaatgt 1855
>emb|AL606843.16| Human DNA sequence from clone RP11-94F13 on chromosome 1 Contains a proteasome (prosome, macropain) 26S subunit ATPase 1 (PSMC10 pseudogene, complete sequence Length = 96028 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 atttgaattttctataaat 145 ||||||||||||||||||| Sbjct: 29976 atttgaattttctataaat 29994
>emb|AL590115.7| Human DNA sequence from clone RP11-255O17 on chromosome 1 Contains a novel gene, the LHX9 gene for LIM homeobox 9 and a CpG island, complete sequence Length = 182527 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 129 ttgaattttctataaatgt 147 ||||||||||||||||||| Sbjct: 158626 ttgaattttctataaatgt 158644
>emb|AL360182.15| Human DNA sequence from clone RP11-549L6 on chromosome 10 Contains the MXI1 gene for MAX interacting protein 1 (MAD2,MXD2), a ribosomal protein L21 (RPL21) pseudogene, a novel gene, the SPF30 gene for splicing factor 30, survival of motor neuron-related (SMNR) and three CpG islands, complete sequence Length = 145256 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 105 gaaactggagtttcattgt 123 ||||||||||||||||||| Sbjct: 64195 gaaactggagtttcattgt 64177
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 293031 agagaagtttcttttgaagtgga 293053
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 292221 agagaagtttcttttgaagtgga 292243
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 292218 agagaagtttcttttgaagtgga 292240
>emb|AL139149.10| Human DNA sequence from clone RP4-660H19 on chromosome 1p31.1-31.3 Contains a novel gene, complete sequence Length = 21958 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 20 ataagtcatttcagagaagttgc 42 ||||||||||||| ||||||||| Sbjct: 17527 ataagtcatttcaaagaagttgc 17549
>emb|AL050307.13|HSDJ689N3 Human DNA sequence from clone RP4-689N3 on chromosome Xp11.1-11.4 Contains the 5' end of the RP2 gene for retinitis pigmentosa 2 (X-linked recessive), the 5' end of the SLC9A7 gene for solute carrier family 9 (sodium/hydrogen exchanger), isoform 7 (NHE7), and two CpG Islands, complete sequence Length = 121502 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 129 ttgaattttctataaatgt 147 ||||||||||||||||||| Sbjct: 164 ttgaattttctataaatgt 146
>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2 Contains a novel gene, the 5' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and a protein tyrosine phosphatase type IVA (member 1) (PTP4A1) pseudogene, complete sequence Length = 168835 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 tgaagtggacactcaacac 64 ||||||||||||||||||| Sbjct: 148022 tgaagtggacactcaacac 148004
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 23818 agagaagtttcttttgaagtgga 23796
>emb|X17318.1|CLZMRPB Zea mays chloroplast trnC gene, rpoB gene, rpoC1 gene, rpoC2 gene and rps2 gene for transfer RNA-Cys, RNA polymerase subunits beta, beta-1, beta-2 and ribosomal protein S2 respectively Length = 12503 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 3732 agagaagtttcttttgaagtgga 3710
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 21564 agagaagtttcttttgaagtgga 21542
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 104937 agagaagtttcttttgaagtgga 104915
>gb|AC161888.5| Mus musculus 6 BAC RP23-448G18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 189867 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 gaagtggacactcaacact 65 ||||||||||||||||||| Sbjct: 109727 gaagtggacactcaacact 109709
>emb|CR352217.9| Zebrafish DNA sequence from clone CH211-129P13 in linkage group 15, complete sequence Length = 162948 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 133 attttctataaatgtgaca 151 ||||||||||||||||||| Sbjct: 151722 attttctataaatgtgaca 151704
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 19779 agagaagtttcttttgaagtgga 19757
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 85897 agagaagtttcttttgaagtgga 85875
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 94712 agagaagtttcttttgaagtgga 94690
>gb|AC104184.2| Homo sapiens chromosome 3 clone RP11-188P20, complete sequence Length = 143034 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 taagtcatttcagagaagt 39 ||||||||||||||||||| Sbjct: 113153 taagtcatttcagagaagt 113171
>gb|AC024474.8| Homo sapiens chromosome 15, clone RP11-686I6, complete sequence Length = 194973 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 129 ttgaattttctataaatgt 147 ||||||||||||||||||| Sbjct: 167857 ttgaattttctataaatgt 167839
>gb|AC079070.6| Homo sapiens chromosome 18, clone RP11-126K15, complete sequence Length = 191464 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 115 tttcattgtcccatttgaatttt 137 ||||||||||| ||||||||||| Sbjct: 71160 tttcattgtccgatttgaatttt 71138
>gb|AC097638.2| Homo sapiens chromosome 3 clone RP11-353H3, complete sequence Length = 170330 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 taagtcatttcagagaagt 39 ||||||||||||||||||| Sbjct: 141793 taagtcatttcagagaagt 141775
>gb|AC091977.3| Homo sapiens chromosome 5 clone RP11-528L24, complete sequence Length = 183494 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 agtttcattgtcccatttg 131 ||||||||||||||||||| Sbjct: 58321 agtttcattgtcccatttg 58303
>gb|DQ363334.1| Filobasidiella neoformans fatty acid synthase beta subunit (FAS1) gene, complete cds Length = 10068 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 gaaccctcaaggccaagta 20 ||||||||||||||||||| Sbjct: 7457 gaaccctcaaggccaagta 7475
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 9250816 agagaagtttcttttgaagtgga 9250794 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 9146911 agagaagtttcttttgaagtgga 9146889
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 13391847 agagaagtttcttttgaagtgga 13391869
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 10313387 agagaagtttcttttgaagtgga 10313365
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 12846137 agagaagtttcttttgaagtgga 12846115
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 17950776 agagaagtttcttttgaagtgga 17950798
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 14374778 agagaagtttcttttgaagtgga 14374800
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 133 attttctataaatgtgaca 151 ||||||||||||||||||| Sbjct: 29762090 attttctataaatgtgaca 29762072
>gb|AC154320.2| Mus musculus BAC clone RP23-308E16 from chromosome 13, complete sequence Length = 202134 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 tcagagaagttgcttttga 48 ||||||||||||||||||| Sbjct: 157718 tcagagaagttgcttttga 157736
>gb|AC013469.8| Homo sapiens BAC clone RP11-463B12 from 2, complete sequence Length = 171419 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 agaaactggagtttcattg 122 ||||||||||||||||||| Sbjct: 49565 agaaactggagtttcattg 49583
>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683B11 Length = 155955 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 133 attttctataaatgtgaca 151 ||||||||||||||||||| Sbjct: 6185 attttctataaatgtgaca 6167
>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131B07 Length = 109135 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 133 attttctataaatgtgaca 151 ||||||||||||||||||| Sbjct: 91821 attttctataaatgtgaca 91803
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 23815 agagaagtttcttttgaagtgga 23793
>gb|AF263282.1|AF263282 Filobasidiella neoformans var. neoformans clone CRYP01, complete sequence Length = 109900 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 gaaccctcaaggccaagta 20 ||||||||||||||||||| Sbjct: 17701 gaaccctcaaggccaagta 17683
>gb|AC154121.6| Mus musculus chromosome 1, clone RP24-93A17, complete sequence Length = 228353 Score = 38.2 bits (19), Expect = 7.5 Identities = 28/30 (93%), Gaps = 2/30 (6%) Strand = Plus / Plus Query: 104 agaaactggagtttcatt--gtcccatttg 131 |||||||||||||||||| |||||||||| Sbjct: 111806 agaaactggagtttcattaggtcccatttg 111835
>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0022A24 Length = 148347 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 96700 agagaagtttcttttgaagtgga 96722
>dbj|AK065152.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B10, full insert sequence Length = 4179 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 133 attttctataaatgtgaca 151 ||||||||||||||||||| Sbjct: 3452 attttctataaatgtgaca 3434
>emb|BX914195.11| Zebrafish DNA sequence from clone CH211-170L6 in linkage group 18, complete sequence Length = 156691 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 133 attttctataaatgtgaca 151 ||||||||||||||||||| Sbjct: 113724 attttctataaatgtgaca 113706
>emb|AJ011417.1|CAL011417 Candida albicans ssm1b gene Length = 1146 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 attgtgagaaactggagtt 116 ||||||||||||||||||| Sbjct: 825 attgtgagaaactggagtt 807
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 25189 agagaagtttcttttgaagtgga 25211
>gb|AC148202.3| Carollia perspicillata clone 598J23, complete sequence Length = 130753 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 tttcattgtcccatttgaa 133 ||||||||||||||||||| Sbjct: 62324 tttcattgtcccatttgaa 62342
>dbj|AP006296.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-137N23, complete sequence Length = 57462 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 128 tttgaattttctataaatg 146 ||||||||||||||||||| Sbjct: 16301 tttgaattttctataaatg 16319
>dbj|AP001786.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-176J24, complete sequences Length = 171744 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 aaggcaattgtgagaaact 110 ||||||||||||||||||| Sbjct: 107765 aaggcaattgtgagaaact 107783
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 10319426 agagaagtttcttttgaagtgga 10319404
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 13346121 agagaagtttcttttgaagtgga 13346143
>emb|AL831802.5|CNS08CAF Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0083D13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104259 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 41133 agagaagtttcttttgaagtgga 41111
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 24270 agagaagtttcttttgaagtgga 24248
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 21498 agagaagtttcttttgaagtgga 21476
>emb|AL808021.12| Mouse DNA sequence from clone RP23-349B15 on chromosome 11, complete sequence Length = 149561 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 aacactcacagatcaacat 78 ||||||||||||||||||| Sbjct: 29969 aacactcacagatcaacat 29987
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold Length = 1501503 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 tttcattgtcccatttgaa 133 ||||||||||||||||||| Sbjct: 1222039 tttcattgtcccatttgaa 1222057
>gb|AC171405.1| Mus musculus BAC clone RP23-103K10 from chromosome 17, complete sequence Length = 181342 Score = 38.2 bits (19), Expect = 7.5 Identities = 28/30 (93%), Gaps = 2/30 (6%) Strand = Plus / Plus Query: 104 agaaactggagtttcatt--gtcccatttg 131 |||||||||||||||||| |||||||||| Sbjct: 94631 agaaactggagtttcattaggtcccatttg 94660
>gb|AC152950.2| Mus musculus 10 BAC RP23-138J18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 181465 Score = 38.2 bits (19), Expect = 7.5 Identities = 28/30 (93%), Gaps = 2/30 (6%) Strand = Plus / Plus Query: 104 agaaactggagtttcatt--gtcccatttg 131 |||||||||||||||||| |||||||||| Sbjct: 140160 agaaactggagtttcattaggtcccatttg 140189
>gb|AC153841.1| Mus musculus 6 BAC RP23-260M5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190541 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 55 cactcaacactcacagatcaaca 77 ||||| ||||||||||||||||| Sbjct: 114410 cactcgacactcacagatcaaca 114432
>gb|AC171730.1| Lycopersicon esculentum chromosome 01 clone C01HBa0256E08, complete sequence Length = 147630 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccatttgaattttctataa 143 ||||||||||||||||||| Sbjct: 53107 ccatttgaattttctataa 53125
>gb|AC127522.7| Homo sapiens chromosome 15, clone RP13-126C7, complete sequence Length = 166914 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 129 ttgaattttctataaatgt 147 ||||||||||||||||||| Sbjct: 117972 ttgaattttctataaatgt 117954
>emb|AL645586.9| Mouse DNA sequence from clone RP23-302O5 on chromosome X, complete sequence Length = 202500 Score = 38.2 bits (19), Expect = 7.5 Identities = 28/30 (93%), Gaps = 2/30 (6%) Strand = Plus / Plus Query: 104 agaaactggagtttcatt--gtcccatttg 131 |||||||||||||||||| |||||||||| Sbjct: 105777 agaaactggagtttcattaggtcccatttg 105806
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 32 agagaagttgcttttgaagtgga 54 ||||||||| ||||||||||||| Sbjct: 292070 agagaagtttcttttgaagtgga 292092
>gb|AC090159.12| Homo sapiens chromosome 11, clone RP11-406D1, complete sequence Length = 173557 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 cagagaagttgcttttgaa 49 ||||||||||||||||||| Sbjct: 101654 cagagaagttgcttttgaa 101636 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,886,275 Number of Sequences: 3902068 Number of extensions: 1886275 Number of successful extensions: 139563 Number of sequences better than 10.0: 112 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 139036 Number of HSP's gapped (non-prelim): 533 length of query: 156 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 134 effective length of database: 17,147,199,772 effective search space: 2297724769448 effective search space used: 2297724769448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)