ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1SYI_COLP3 (Q486U0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 30 1.4
2V119_ASFL5 (P26703) LIS 119-1 protein precursor 30 1.4
3HFE_PANTR (P60018) Hereditary hemochromatosis protein homolog pr... 30 1.8
4HFE_HUMAN (Q30201) Hereditary hemochromatosis protein precursor ... 30 1.8
5MYOM_LYMST (Q25413) Myomodulin neuropeptides precursor [Contains... 29 3.1
6RL3_HELHP (Q7VGE4) 50S ribosomal protein L3 28 4.0
7LUXS_STAES (Q8CNI0) S-ribosylhomocysteine lyase (EC 4.4.1.21) (A... 28 4.0
8LUXS_STAEQ (Q5HM88) S-ribosylhomocysteine lyase (EC 4.4.1.21) (A... 28 4.0
9GPTC2_MOUSE (Q7TQC7) G patch domain-containing protein 2 28 4.0
10NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplas... 28 5.3
11ARR7_ARATH (Q9ZWS7) Two-component response regulator ARR7 28 6.9
12CD48C_ARATH (Q9SS94) Cell division control protein 48 homolog C ... 28 6.9
13TRPB1_ARATH (P14671) Tryptophan synthase beta chain 1, chloropla... 27 9.0
14HFE_RHIUN (Q9GL41) Hereditary hemochromatosis protein homolog pr... 27 9.0
15HFE_DICSU (Q9GL42) Hereditary hemochromatosis protein homolog pr... 27 9.0
16HFE_DICBI (Q9GL43) Hereditary hemochromatosis protein homolog pr... 27 9.0
17HFE_CERSI (Q9GKZ0) Hereditary hemochromatosis protein homolog pr... 27 9.0
18VP3_BTV2A (Q65748) VP3 core protein (Major inner capsid protein) 27 9.0
19VP3_BTV1S (P56582) VP3 core protein (Major inner capsid protein) 27 9.0
20VP3_BTV1A (P20608) VP3 core protein (Major inner capsid protein) 27 9.0
21VP3_BTV17 (P03539) VP3 core protein (Major inner capsid protein) 27 9.0
22VP3_BTV11 (Q65749) VP3 core protein (Major inner capsid protein) 27 9.0
23VP3_BTV10 (P12435) VP3 core protein (Major inner capsid protein) 27 9.0 
>SYI_COLP3 (Q486U0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 953

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = -3

Query: 348 MADLKEAKNQVAASFAAEGSIMGE----LKQW--NDLYGEGGSRKKEQLTYFL 208
           M+D K+  N  A SFA +G++       LK W   DLYG+    KK + ++ L
Sbjct: 1   MSDYKQTLNLPATSFAMKGNMANREPNMLKYWAAKDLYGKIREAKKGKKSFIL 53
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>V119_ASFL5 (P26703) LIS 119-1 protein precursor|
          Length = 119

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 182 NYVHTLSVQRKYVNCSFFLEPPSPYKSFHCFNSPIM 289
           +Y+   S+ R +  C +F++P SPY  +   + PI+
Sbjct: 78  DYISQCSIARYFDRCMYFIKPKSPYIHYMDCSQPIV 113
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>HFE_PANTR (P60018) Hereditary hemochromatosis protein homolog precursor|
           (HLA-H)
          Length = 348

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 202 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 336
           C  ++ QLL L R     Q+ PL+++TH+ T S  T R   L ++
Sbjct: 187 CPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYY 231
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>HFE_HUMAN (Q30201) Hereditary hemochromatosis protein precursor (HLA-H)|
          Length = 348

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 202 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 336
           C  ++ QLL L R     Q+ PL+++TH+ T S  T R   L ++
Sbjct: 187 CPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYY 231
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>MYOM_LYMST (Q25413) Myomodulin neuropeptides precursor [Contains:|
           GLQMLRL-amide; QIPMLRL-amide; SMSMLRL-amide;
           SLSMLRL-amide; Myomodulin A (PMSMLRL-amide)]
          Length = 350

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 394 EDERKRQGDHSEAIKHGRFERSKEPGG 314
           E+ER+  GD  E  +H RF RS E  G
Sbjct: 97  EEERELSGDELEVPEHHRFRRSTENSG 123
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>RL3_HELHP (Q7VGE4) 50S ribosomal protein L3|
          Length = 192

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = -3

Query: 390 MKEKDKEIILRPLNMADLKEAKNQVAASFAAEG-SIMGELKQWNDLYGEG--GSRKKEQL 220
           +K  +KE+    L++A L EAK +V  SF  +G    G +K+WN   G G  GSR   +L
Sbjct: 73  LKVSNKEV--GELDVASLSEAK-RVQVSFKTKGRGFSGAMKRWNFQGGPGAHGSRFHRRL 129
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>LUXS_STAES (Q8CNI0) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2|
           production protein luxS) (AI-2 synthesis protein)
          Length = 156

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 10/39 (25%)
 Frame = -3

Query: 330 AKNQVAASFAAEGSIMG----------ELKQWNDLYGEG 244
           A N+V   +AA  S+ G          + +QWND+YGEG
Sbjct: 117 ACNEVQCGWAASHSLEGAKTIAQAFLDKREQWNDIYGEG 155
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>LUXS_STAEQ (Q5HM88) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2|
           production protein luxS) (AI-2 synthesis protein)
          Length = 156

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 10/39 (25%)
 Frame = -3

Query: 330 AKNQVAASFAAEGSIMG----------ELKQWNDLYGEG 244
           A N+V   +AA  S+ G          + +QWND+YGEG
Sbjct: 117 ACNEVQCGWAASHSLEGAKTIAQAFLDKREQWNDIYGEG 155
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>GPTC2_MOUSE (Q7TQC7) G patch domain-containing protein 2|
          Length = 527

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 3   KKEQNQKDLLCSADSLLVYKYNNQTQANYSLRGDRLSFH 119
           K   N+KD   S D +LV K    +  + S+RG RL +H
Sbjct: 105 KHSNNKKDRSDSDDQMLVAKRRPSSNLSSSVRGKRLLWH 143
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>NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplast precursor|
          Length = 1385

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 244  RLEEEGAVDILPLNTKCMNIIWKVE*MANNYEKIGRLLCQNT*KDSLSP 98
            RL  E A+D  PLNTK +N+  + E    +Y +   L  +    D LSP
Sbjct: 1039 RLLFERALDAHPLNTKIINMYARFEAEEGSYREAAELYDRALQIDPLSP 1087
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>ARR7_ARATH (Q9ZWS7) Two-component response regulator ARR7|
          Length = 206

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 390 MKEKDKEIILRPLNMADLKEAKNQVAASFAAEGSIM 283
           +KE  +E +L+P+ +AD+K  K  +  + A E  I+
Sbjct: 127 LKEGAEEFLLKPVKLADVKRIKQLIMRNEAEECKIL 162
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>CD48C_ARATH (Q9SS94) Cell division control protein 48 homolog C (AtCDC48c)|
          Length = 820

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -3

Query: 393 KMKEKDKEIILRPLNMADLKEAKNQVAASFAAEG-SIMGELKQWNDLYG 250
           +M   ++E+    + M+D +EA N V AS   EG SI+ ++K W+D+ G
Sbjct: 485 RMPWPEEELEKLFVKMSDFEEAVNLVQASLTREGFSIVPDVK-WDDVGG 532
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>TRPB1_ARATH (P14671) Tryptophan synthase beta chain 1, chloroplast precursor|
           (EC 4.2.1.20)
          Length = 470

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +3

Query: 204 FRGSMSTAPSSSSRLHH 254
           FR S+S+APSSSS+L H
Sbjct: 10  FRASVSSAPSSSSQLTH 26
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>HFE_RHIUN (Q9GL41) Hereditary hemochromatosis protein homolog precursor|
          Length = 348

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 202 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 336
           C E++  LL L R     Q+ PL+++TH+   +  T R   L F+
Sbjct: 187 CPEQLQWLLELGRGVLDQQVPPLVKVTHHVASAVTTLRCQALNFY 231
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>HFE_DICSU (Q9GL42) Hereditary hemochromatosis protein homolog precursor|
          Length = 348

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 202 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 336
           C E++  LL L R     Q+ PL+++TH+   +  T R   L F+
Sbjct: 187 CPEQLQWLLELGRGVLDQQVPPLVKVTHHVASAVTTLRCQALNFY 231
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>HFE_DICBI (Q9GL43) Hereditary hemochromatosis protein homolog precursor|
          Length = 348

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 202 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 336
           C E++  LL L R     Q+ PL+++TH+   +  T R   L F+
Sbjct: 187 CPEQLQWLLELGRGVLDQQVPPLVKVTHHVASAVTTLRCQALNFY 231
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>HFE_CERSI (Q9GKZ0) Hereditary hemochromatosis protein homolog precursor|
          Length = 348

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 202 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 336
           C E++  LL L R     Q+ PL+++TH+   +  T R   L F+
Sbjct: 187 CPEQLQWLLELGRGVLDQQVPPLVKVTHHVASAVTTLRCQALNFY 231
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>VP3_BTV2A (Q65748) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 21  KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 122
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429
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>VP3_BTV1S (P56582) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 21  KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 122
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429
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>VP3_BTV1A (P20608) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 21  KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 122
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429
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>VP3_BTV17 (P03539) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 21  KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 122
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429
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>VP3_BTV11 (Q65749) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 21  KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 122
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429
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>VP3_BTV10 (P12435) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 21  KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 122
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,455,741
Number of Sequences: 219361
Number of extensions: 1047990
Number of successful extensions: 2612
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2611
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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