ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl43g10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 52.0 bits (123), Expect = 4e-07 Identities = 24/30 (80%), Positives = 25/30 (83%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 YMLLYPNTSD EK GLTAMGIPNS+SI Sbjct: 848 YMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 45.1 bits (105), Expect = 4e-05 Identities = 23/30 (76%), Positives = 24/30 (80%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 YMLLYPNTSD G A GLTA GIPNS+SI Sbjct: 834 YMLLYPNTSDHKG-AAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 45.1 bits (105), Expect = 4e-05 Identities = 22/30 (73%), Positives = 24/30 (80%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 YMLLYPNTSD G A G+TA GIPNS+SI Sbjct: 838 YMLLYPNTSDVTG-AAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/30 (70%), Positives = 24/30 (80%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 Y LLYPNTSD G+ A GL+A GIPNS+SI Sbjct: 842 YTLLYPNTSDLKGD-AAGLSARGIPNSISI 870
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 38.9 bits (89), Expect = 0.003 Identities = 19/30 (63%), Positives = 23/30 (76%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 Y L++PNTSD G A G+TA GIPNS+SI Sbjct: 835 YTLMFPNTSDNKGA-AEGITARGIPNSISI 863
>ZN473_HUMAN (Q8WTR7) Zinc finger protein 473 (Zinc finger protein 100 homolog)| (Zfp-100) Length = 871 Score = 32.3 bits (72), Expect = 0.30 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +3 Query: 105 FPSSTNPWQLITATTQKPMKSNTIHLARHEPIHDQRTGDYRKKET 239 F ST W T T +KP KS + H P HD + G+++K T Sbjct: 274 FSQSTYLWHQKTHTGEKPCKSQD---SDHPPSHDTQPGEHQKTHT 315
>ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (MXBP protein) Length = 487 Score = 31.6 bits (70), Expect = 0.51 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Frame = +1 Query: 61 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 210 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 211 GRATTERRKQRPCSAQMETLLGMPMAVSPSAFSPLASDVLG 333 G T+ + RP S Q SP+ +P + G Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQNTSG 323
>ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (HB16) Length = 487 Score = 31.2 bits (69), Expect = 0.66 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Frame = +1 Query: 61 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 210 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 211 GRATTERRKQRPCSAQMETLLGMPMAVSPSAFSPLASDVLG 333 G T+ + RP S Q SP+ +P G Sbjct: 283 GLVRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSG 323
>ATF2_CHICK (O93602) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) Length = 487 Score = 31.2 bits (69), Expect = 0.66 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%) Frame = +1 Query: 61 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*KV----------TQYTLRDTNRSMTS 210 H P + ++ ++ P IPG PQP +S+ K+ Q T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSIPGIPGPSSPQPVQSEAKLRLKAALTQQHPQVTNGDTAKGHPS 282 Query: 211 GRATTERRKQRPCSAQMETLLGMPMAVSPS 300 G T+ + RP S Q SP+ Sbjct: 283 GLVRTQSEEPRPQSLQQPATSTTETPASPA 312
>GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 449 Score = 30.8 bits (68), Expect = 0.86 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +3 Query: 63 LSSPYQHHLRHNHHFPSSTNPW---QLITATTQKPMKSNTIH 179 L+ Y HH H+HH PS +P+ L A P ++ +H Sbjct: 173 LNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLH 214
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 Y LLYP++ + GLT GIPNS+SI Sbjct: 844 YTLLYPSSEE-------GLTCRGIPNSISI 866
>HUNB_MUSDO (Q01778) Protein hunchback| Length = 817 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 2/42 (4%) Frame = +3 Query: 3 REGKFLEMKRMRT--RVLIHASLSSPYQHHLRHNHHFPSSTN 122 R+G+ L++ + +T + I ++ +SP QHHL HN+ P +T+ Sbjct: 645 RKGRVLKLDQEKTAGHLQIASAPTSP-QHHLHHNNEMPPTTS 685
>ATF2_RAT (Q00969) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) Length = 487 Score = 29.6 bits (65), Expect = 1.9 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Frame = +1 Query: 61 HCPHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*K------VTQ----YTLRDTNRSMTS 210 H P + ++ ++ P IPG PQP +S+ K +TQ T DT + S Sbjct: 223 HVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGS 282 Query: 211 GRATTERRKQRPCSAQMETLLGMPMAVSPSAFSPLASDVLG 333 G + + RP S Q SP+ +P + G Sbjct: 283 GLVRAQSEESRPQSLQQPATSTTETPASPAHTTPQTQNTSG 323
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 Y LLYP++ + GLT GIPNS+SI Sbjct: 831 YTLLYPSSEE-------GLTFRGIPNSISI 853
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 Y LLYP++ + GLT GIPNS+SI Sbjct: 817 YTLLYPSSEE-------GLTFRGIPNSISI 839
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 Y LLYP++ + GLT GIPNS+SI Sbjct: 839 YTLLYPSSKE-------GLTFRGIPNSISI 861
>CHEB1_PSESM (Q884V3) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 390 Score = 29.3 bits (64), Expect = 2.5 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = +3 Query: 108 PSSTNPWQLITATTQKPMKSNTIHLARHEPIHDQRTGDYRKKETKTMLSSDGDAVGDAHG 287 PS+ P + + + T P + H A H P H TG ++K K + A+G + G Sbjct: 164 PSAAAPARAVPSRTVAPAAAPAAH-AHHTPAHPTTTGTAKRKAYKLV------AIGTSTG 216 Query: 288 G 290 G Sbjct: 217 G 217
>HXA1_MOUSE (P09022) Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein| ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399) Length = 331 Score = 29.3 bits (64), Expect = 2.5 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +3 Query: 63 LSSPYQHHLRHNHHFPSS 116 +SSP+ HH H+HH P + Sbjct: 56 ISSPHHHHHHHHHHHPQT 73
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 Y LL+PN+ GLT GIPNS+SI Sbjct: 844 YTLLHPNSE--------GLTCRGIPNSISI 865
>GLTL2_MOUSE (Q9D2N8) Polypeptide N-acetylgalactosaminyltransferase-like protein| 2 (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase-like protein 2) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 2) (Polypeptide GalNAc tra Length = 638 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -1 Query: 236 FLLSVVARPLVMDRF-VSRKVYCVTFHWLL 150 F LS VA+P +R + R++ C TFHW L Sbjct: 459 FTLSKVAKPDCTERLKLQRRLGCRTFHWFL 488
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 Y LL+P + + GLT GIPNSVSI Sbjct: 837 YTLLFPTSEE-------GLTGKGIPNSVSI 859
>AHC1_YEAST (Q12433) Protein AHC1 (ADA HAT complex component 1)| Length = 566 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 8/44 (18%) Frame = +3 Query: 63 LSSPYQHHLRHNHHFPSS--------TNPWQLITATTQKPMKSN 170 + SP Q L+H HH P+S TN +Q+ T + + +++N Sbjct: 1 MMSPAQDKLQHQHHNPNSSSSSSSKMTNVYQVTTPKSPQDLENN 44
>CADH1_RAT (Q9R0T4) Epithelial-cadherin precursor (E-cadherin) (Uvomorulin)| (Cadherin-1) (CD324 antigen) [Contains: E-Cad/CTF1; E-Cad/CTF2; E-Cad/CTF3] Length = 886 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 12/55 (21%) Frame = +3 Query: 12 KFLEMKRMRTRVLIHA------------SLSSPYQHHLRHNHHFPSSTNPWQLIT 140 + L++ ++ T L+HA +L S HH RH+H P S + +L+T Sbjct: 91 RHLKLHKLETSFLVHAWDSSYRKLSTKVTLKSLGHHHHRHHHRDPVSESNPELLT 145
>VGLM_EBV (P03215) Glycoprotein M| Length = 405 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +1 Query: 136 LPQPPRSQ*KVTQYTLRDTNRSMTSGRATTERRKQRPCSAQMETLLGMPM 285 L PR + T R+ RS TS ++ R+QRP S Q +PM Sbjct: 346 LESEPRPRPSRTPSPGRNRRRSSTSSSSSRSTRRQRPVSTQALVSSVLPM 395
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/38 (28%), Positives = 17/38 (44%) Frame = +3 Query: 54 HASLSSPYQHHLRHNHHFPSSTNPWQLITATTQKPMKS 167 H + P+ HH H+HH P P + A + K+ Sbjct: 38 HHNSHHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>YO25_CAEEL (P34675) Hypothetical protein ZK688.5| Length = 1620 Score = 27.7 bits (60), Expect = 7.3 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = +1 Query: 115 PLIPGN*LPQPPRSQ*KVTQYTLRDTNRSMTSGRATTERRKQRPCS--AQMETLLGMPMA 288 P +P LP P Q + TS R TT R +P + A+ ETL P+A Sbjct: 628 PSVPVETLPPPGSDQ------------QPGTSRRFTTHRFNVQPDARGAETETLAPFPVA 675 Query: 289 VSPSAFSPLASDV 327 + P+ +A ++ Sbjct: 676 IEPNELQRIAKNI 688
>HIPK4_RAT (Q4V793) Homeodomain-interacting protein kinase 4 (EC 2.7.11.1)| Length = 616 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 48 LIHASLSSPYQHHLRHNHHFPSSTNPWQL 134 L+HA+ + HH + P +TNPWQL Sbjct: 238 LLHAARKA---HHFFKRNPHPDATNPWQL 263
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/38 (28%), Positives = 17/38 (44%) Frame = +3 Query: 54 HASLSSPYQHHLRHNHHFPSSTNPWQLITATTQKPMKS 167 H + P+ HH H+HH P P + A + K+ Sbjct: 38 HHNSHHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>GDS1_YEAST (P41913) Protein GDS1| Length = 522 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +1 Query: 163 KVTQYTLRDTNRSMTSGRATTERRKQRPCSAQMETLLGMPMAVSPSAFSPLAS 321 K Y DTN SMT + T + + +Q ++L P S ++ S AS Sbjct: 325 KKRNYMDEDTNESMTEPKKTKTTKPGKQTKSQSLSVLSTPKKGSSASLSTFAS 377
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 24.6 bits (52), Expect(2) = 8.3 Identities = 10/36 (27%), Positives = 19/36 (52%) Frame = +3 Query: 42 RVLIHASLSSPYQHHLRHNHHFPSSTNPWQLITATT 149 R+ + ++ ++ HH +H+HH P + T TT Sbjct: 10 RLSLPSTTTTRDHHHQQHHHHPPPPPSRTHFTTITT 45 Score = 21.2 bits (43), Expect(2) = 8.3 Identities = 11/41 (26%), Positives = 16/41 (39%) Frame = +2 Query: 125 LATNYRNHPEANEK*HNTPCETRTDP*PADGRLPKEGNKDH 247 L ++ HP + H+ P R P D P +DH Sbjct: 65 LFLSFPPHPPRPPQDHHRPTPARDHRDPRDHLPPTRTRRDH 105
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 Y LL+P + GLT GIPNSVSI Sbjct: 838 YTLLFPTSEG-------GLTGKGIPNSVSI 860
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 Y LL+P++ + GLT GIPNS+SI Sbjct: 842 YTLLHPSSKE-------GLTFRGIPNSISI 864
>GLTL2_HUMAN (Q8N3T1) Polypeptide N-acetylgalactosaminyltransferase-like protein| 2 (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase-like protein 2) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 2) (Polypeptide GalNAc tra Length = 639 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -1 Query: 236 FLLSVVARPLVMDRF-VSRKVYCVTFHWLL 150 F LS +P M+R + R++ C TFHW L Sbjct: 460 FSLSKAEKPDCMERLQLQRRLGCRTFHWFL 489
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = -1 Query: 347 YMLLYPNTSDANGEKALGLTAMGIPNSVSI 258 Y LL+P + GLT GIPNSVSI Sbjct: 839 YTLLFPTSEG-------GLTGKGIPNSVSI 861
>C14AA_BACTS (Q45710) Pesticidal crystal protein cry14Aa (Insecticidal| delta-endotoxin CryXIVA(a)) (Crystaline entomocidal protoxin) (132 kDa crystal protein) Length = 1186 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/58 (25%), Positives = 30/58 (51%) Frame = +3 Query: 9 GKFLEMKRMRTRVLIHASLSSPYQHHLRHNHHFPSSTNPWQLITATTQKPMKSNTIHL 182 G++ E+++ L HA + + +L HN HF ++ WQ+ K +++N + L Sbjct: 1038 GEYHEIEQKMKEALKHA-FTQLDEKNLIHNGHFATNLIDWQVEGDARMKVLENNALAL 1094 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,755,678 Number of Sequences: 219361 Number of extensions: 857815 Number of successful extensions: 2803 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2564 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2758 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
