ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl43g09 |
|---|---|
| Clone Library Name | barley_pub |
>SPY_HORVU (O82422) Probable UDP-N-acetylglucosamine--peptide| N-acetylglucosaminyltransferase SPINDLY (EC 2.4.1.-) (HvSPY) Length = 944 Score = 32.7 bits (73), Expect = 0.21 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = -2 Query: 401 PSGRCEANGHSSR 363 PSGRCEANGHSSR Sbjct: 932 PSGRCEANGHSSR 944
>GCM_DROME (Q27403) Transcription factor glial cells missing (Protein glide)| Length = 504 Score = 32.0 bits (71), Expect = 0.36 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Frame = +1 Query: 196 CYKSGVTSVSQPHTPVSEVNNRNTYID---PQQRLTSMAHLELYSNQCMPASME--HPIG 360 CY +G+ S H+P+S ++ +Y PQQ S +L Q +P S + PI Sbjct: 296 CYANGMYSYDMLHSPLSAHSSTGSYYQENKPQQLQHSQYQQQLSPQQHVPVSYDPSQPIS 355 Query: 361 HRLLCPFASH 390 L C S+ Sbjct: 356 SSLQCGMPSY 365
>B4GT3_RAT (Q6P768) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)| (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3) [Includes: N-a Length = 395 Score = 30.8 bits (68), Expect = 0.81 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 289 VAAGGQYRCCGC*PRKREYVVVKH 218 V +GG+YR GC PR R ++V H Sbjct: 110 VESGGRYRPAGCEPRSRTAIIVPH 133
>B4GT3_MOUSE (Q91YY2) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)| (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3) [Includes: N Length = 395 Score = 30.8 bits (68), Expect = 0.81 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 289 VAAGGQYRCCGC*PRKREYVVVKH 218 V +GG+YR GC PR R ++V H Sbjct: 110 VESGGRYRPAGCEPRSRTAIIVPH 133
>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) Length = 2350 Score = 30.0 bits (66), Expect = 1.4 Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Frame = +2 Query: 98 TWHILFTHTPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILP--FPRSTTATPI 271 T H T P L G ST+QT P N + PV H H+LP P TA+ + Sbjct: 572 THHPALTPGPHLLAG---STSQTPLPTINTHPLTSGPHHPVHHPHLLPTVLPGVPTAS-L 627 Query: 272 LTPSSDLHQWHISSYIVISVCLHQWSIPLVIGCCAHLL 385 L L H SS +++ HQ L+ HLL Sbjct: 628 LGGHPRLESAHASSLSHLALA-HQQQQQLLQHQSPHLL 664
>B4GT3_PONPY (Q5NVN3) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)| (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3) [Includes: N Length = 393 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -3 Query: 289 VAAGGQYRCCGC*PRKREYVVVKH 218 V GG+YR GC PR R ++V H Sbjct: 108 VEPGGRYRPAGCEPRSRTAIIVPH 131
>B4GT3_HUMAN (O60512) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)| (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3) [Includes: N Length = 393 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -3 Query: 289 VAAGGQYRCCGC*PRKREYVVVKH 218 V GG+YR GC PR R ++V H Sbjct: 108 VEPGGRYRPAGCEPRSRTAIIVPH 131
>MGP_RAT (P08494) Matrix Gla-protein precursor (MGP)| Length = 103 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 193 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQR 288 +CY+S + S +P + N NT+I PQQR Sbjct: 18 LCYESHESMESYEVSPFTTRRNANTFISPQQR 49
>NOS2_RAT (Q06518) Nitric oxide synthase, inducible (EC 1.14.13.39) (NOS type| II) (Inducible NO synthase) (Inducible NOS) (iNOS) Length = 1147 Score = 29.6 bits (65), Expect = 1.8 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Frame = +2 Query: 101 WHILF---THTPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPI 271 W LF ++ DL+ K + N K P I S T+Q P H H FP+ T T Sbjct: 5 WKFLFRVKSYQGDLKEEKDINNNVEKTPGA--IPSPTTQDDPKSHKHQNGFPQFLTGTAQ 62 Query: 272 LTPSSDLHQWHIS 310 P S L + H++ Sbjct: 63 NVPES-LDKLHVT 74
>IF3A_YEAST (P38249) Eukaryotic translation initiation factor 3 110 kDa subunit| (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 964 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +1 Query: 205 SGVTSVSQPHTPVSEVNNRNTYIDPQQRLTSMAHLELYSNQCMPASME 348 S T SQ P+ +V R ++ Q+ T+++ ELY +PA ++ Sbjct: 412 SSKTYFSQYIAPLRDVIMRRVFVAASQKFTTVSQSELYKLATLPAPLD 459
>TOLB_CHLMU (Q9PJE1) Protein tolB precursor| Length = 426 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Frame = +2 Query: 104 HILFTHTPDLQGGK----*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPI 271 H L THTP + GK STN ++ + S G H+ P + + Sbjct: 127 HFLLTHTPGISSGKIIFSLCSTNSSEELKQGELWSVDYDG-----QHLAPLTNEHSLS-- 179 Query: 272 LTPSSDLHQWHISSYIVIS 328 +TP+ +H HI +YI +S Sbjct: 180 VTPAW-MHISHIPAYIYVS 197
>MGP_PIG (Q8MJ39) Matrix Gla-protein precursor (MGP)| Length = 103 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 193 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQRLTSMA 303 +CY+S + S P N NT+I PQQR + A Sbjct: 18 LCYESHESLESYEINPFLNRRNANTFISPQQRWRAKA 54
>MGP_HUMAN (P08493) Matrix Gla-protein precursor (MGP)| Length = 103 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 193 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQR 288 +CY+S + S P N NT+I PQQR Sbjct: 18 LCYESHESMESYELNPFINRRNANTFISPQQR 49
>MGP_CHILA (Q6QN06) Matrix Gla-protein precursor (MGP)| Length = 103 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +1 Query: 193 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQRLTSMA 303 +CY+S + S +P N NT++ PQQR + A Sbjct: 18 VCYESHESMESYEISPFLNRRNANTFMSPQQRWRAKA 54
>YSE2_CAEEL (Q09936) Hypothetical protein C53C9.2 in chromosome X| Length = 397 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = +1 Query: 202 KSGVTSVSQPHTPVSEVNNRNTYIDPQQRLTSMAHLELYSNQCMPASMEHPIG 360 + G+T+V P +++ + + YI P QR ++ ++ +NQ E PIG Sbjct: 41 QKGMTAVGMPRWNITK-DKKQGYIAPDQRSENVLRVQCGTNQYASQKGETPIG 92
>Y589_MYCPN (Q50338) Hypothetical protein MPN589 (D02_orf157L)| Length = 157 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/74 (25%), Positives = 32/74 (43%) Frame = +2 Query: 80 FYHANSTWHILFTHTPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTT 259 + + N + + T T DL GG S + + I SA ++ V + +LP P+ Sbjct: 84 YEYKNHGYGLALTDT-DLLGGSSGSLVFNQDKKISSIYSAATESDSVGYAQLLPVPKDVN 142 Query: 260 ATPILTPSSDLHQW 301 ++ S DL W Sbjct: 143 GVSLVKYSYDLILW 156
>LEUK_MOUSE (P15702) Leukosialin precursor (Leucocyte sialoglycoprotein)| (Sialophorin) (Ly-48) (B cell differentiation antigen LP-3) (CD43 antigen) Length = 395 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +2 Query: 149 SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTPSSDLH 295 +S+N+T P S+ + G PV TTAT L PSS++H Sbjct: 164 TSSNETSGPSVATTVSSKTSGPPV-----------TTATGSLGPSSEMH 201
>MGP_RABIT (P47841) Matrix Gla-protein precursor (MGP)| Length = 103 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 193 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQRLTSMAHLELYSNQCMPA 339 +CY+S + S P N NT++ PQQR + A E Q PA Sbjct: 18 LCYESHESMESYEINPFINRRNANTFMSPQQRWMAKAQ-ERVREQRKPA 65
>MGP_MOUSE (P19788) Matrix Gla-protein precursor (MGP)| Length = 104 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +1 Query: 193 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQRLTSMA 303 +CY+S + S +P N NT++ PQQR + A Sbjct: 18 LCYESHESMESYEISPFINRRNANTFMSPQQRWRAKA 54
>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAII) Length = 768 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/58 (29%), Positives = 27/58 (46%) Frame = +2 Query: 113 FTHTPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTPSS 286 + T QGG+ ++T TK+ PT Y+T+ S + P +TT T S+ Sbjct: 163 YASTSTKQGGEITTTFVTKNIPTTYLTTIAPTSSVTTVTNFTPTTITTTVCSTGTNSA 220
>RON_HUMAN (Q04912) Macrophage-stimulating protein receptor precursor (EC| 2.7.10.1) (MSP receptor) (p185-Ron) (CDw136 antigen) [Contains: Macrophage-stimulating protein receptor alpha chain; Macrophage-stimulating protein receptor beta chain] Length = 1400 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +2 Query: 35 SRSCSYIYNQRLSLCFYHANSTWHILFT 118 S +C YI N +++C H S WH++ + Sbjct: 776 SPNCGYI-NSHITICGQHLTSAWHLVLS 802
>PGPLA_DROME (Q95T64) Peptidoglycan-recognition protein-LA| Length = 368 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = +2 Query: 131 LQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTPSSDLHQWHIS 310 LQG + +S Q H T+ +S +S G LP P++ P + PSS ++ H + Sbjct: 17 LQGRQRASPAQRLHNLTSAGSSTSSSG--------LPLPQNIFTNPAIQPSSVINLNHST 68 Query: 311 SYIVISVCLHQWSIPL 358 ++ + +Q + + Sbjct: 69 DVVIGPMTQYQGPVSI 84
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = +2 Query: 104 HILFTHTPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTP 280 H+ T +P +G + PPT+ T Q SP+ H+ P PR P +P Sbjct: 211 HVQPTPSPPSRGHQPQPPTHRHAPPTHRHAPPTHQPSPL--RHLPPSPRRQPQPPTYSP 267
>INLA_LISMO (P25146) Internalin A precursor| Length = 800 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = +1 Query: 235 TPVSEVNNRNTYIDPQQRLTSMAHLELYSN 324 T ++ NN+ T IDP + LT++ LEL SN Sbjct: 145 TGLTLFNNQITDIDPLKNLTNLNRLELSSN 174
>INLA_LISMF (Q723K6) Internalin A precursor| Length = 800 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = +1 Query: 235 TPVSEVNNRNTYIDPQQRLTSMAHLELYSN 324 T ++ NN+ T IDP + LT++ LEL SN Sbjct: 145 TGLTLFNNQITDIDPLKNLTNLNRLELSSN 174
>AROF_STRCO (P80574) Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54)| (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) Length = 449 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/66 (27%), Positives = 30/66 (45%) Frame = +1 Query: 172 SPHELYYICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQRLTSMAHLELYSNQCMPASMEH 351 S HE + Y+S +T V + +V+ +I + R AH+E S + + Sbjct: 234 SSHEALLLDYESALTRVDSRTGQLYDVSGHMVWIGERTRQLDHAHIEFASR------IRN 287 Query: 352 PIGHRL 369 PIG +L Sbjct: 288 PIGIKL 293
>TPSN_CANFA (Q5TJE4) Tapasin precursor (TPSN) (TPN) (TAP-binding protein)| Length = 449 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +3 Query: 81 STMPTQLGIYSLLIHLTYRGVNKALQIRLSIPPRIIL 191 + P Q G Y +HL Y AL++ + PP+I L Sbjct: 260 AVQPFQEGTYLATVHLPYLQGQVALELSVQKPPKISL 296
>BGAL_BACHD (Q9K9C6) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 1014 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -3 Query: 385 KQMGTAADDQWDAPLMQAY 329 KQMG DD W AP+ Y Sbjct: 979 KQMGVGGDDSWGAPVHDEY 997
>E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 484 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +3 Query: 111 SLLIHLTYRGVNKALQIRLSIPPRIILHLLQVRGHQ 218 SLLI + GVN Q R +PP ++ LL+ G Q Sbjct: 19 SLLIEVEGIGVNWGSQARHPLPPATVVRLLRENGIQ 54
>CLD3_HUMAN (O15551) Claudin-3 (Clostridium perfringens enterotoxin receptor 2)| (CPE-receptor 2) (CPE-R 2) (Ventral prostate.1 protein homolog) (HRVP1) Length = 220 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = -3 Query: 280 GGQYRCCGC*PRKREYVVVK 221 GG CC C PR+++Y K Sbjct: 176 GGALLCCSCPPREKKYTATK 195
>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAI) Length = 767 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +2 Query: 122 TPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTPSS 286 T QGG+ ++T TK+ PT Y+T+ S + P +TT T S+ Sbjct: 165 TSTKQGGEITTTFVTKNIPTTYLTTIAPTSSVTTVTNFTPTTITTTVCSTGTNSA 219
>PACC_ASPOR (Q9HFB3) pH-response transcription factor pacC/RIM101| Length = 662 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +2 Query: 176 PTNYITSATSQGSPVFHNHILPFPRSTTATPILTPSSDLHQW 301 P ++ T+ TS G P+ N P S T TP LTP S + Sbjct: 386 PPSHATATTSAG-PIMAN---PATHSPTGTPALTPPSSAQSY 423 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,472,207 Number of Sequences: 219361 Number of extensions: 1356708 Number of successful extensions: 3177 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3174 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
