>CHST7_RAT (Q6XQG8) Carbohydrate sulfotransferase 7 (EC 2.8.2.17) (EC 2.8.2.-)|
           (Chondroitin 6-sulfotransferase 2) (C6ST-2)
           (N-acetylglucosamine 6-O-sulfotransferase 1)
           (GlcNAc6ST-4)
           (Galactose/N-acetylglucosamine/N-acetylglucosamine
           6-O-sulfotransferase 5
          Length = 485

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 311 LLAPELLRQESDLENAGSKCPDMGNSVGEETLNAAATSGMESG 183
           LL P +L   S+ +  G  CP +  S+G  +L AAA    E G
Sbjct: 26  LLVPSVLDSGSEQDKGGRDCPGLQRSLGVWSLEAAAAGEREQG 68

>CONN_DROME (Q01819) Connectin precursor|
          Length = 682

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 79  HYDVSIHITFTKCTGENFDVLIR*LGPYVAVSSTGPDSIPLVAAAFRVSSPTELPMSGHL 258
           H DV + +T    +G+  D+L      Y+ +    P+ +P       +S PTELP+S  L
Sbjct: 588 HNDVDVLMTSHSASGDALDILTTKNAIYIKLFLLKPEMLP---CHDELSDPTELPLSRDL 644

Query: 259 L 261
           +
Sbjct: 645 M 645

>CHST7_MOUSE (Q9EP78) Carbohydrate sulfotransferase 7 (EC 2.8.2.17) (EC 2.8.2.-)|
           (Chondroitin 6-sulfotransferase 2) (C6ST-2) (mC6ST-2)
           (N-acetylglucosamine 6-O-sulfotransferase 1)
           (GlcNAc6ST-4)
           (Galactose/N-acetylglucosamine/N-acetylglucosamine
           6-O-sulfot
          Length = 484

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 311 LLAPELLRQESDLENAGSKCPDMGNSVGEETLNAAATSGMESG 183
           LL P +L   S+ ++ G  CP +  S+G  +L AAA    E G
Sbjct: 26  LLVPSVLDSHSE-QDKGRNCPGLQRSLGVWSLEAAAAGEREQG 67

>YWRJ_BACSU (O05223) Hypothetical protein ywrJ|
          Length = 225

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 189 LHPTGGSSIQSFLTHRIAHVRAFASSVFKITFLS 290
           ++ TGG SI  ++T+ +     F S VFKI F+S
Sbjct: 98  VYVTGGRSIHGYVTNVLNDYIVFFSPVFKILFIS 131

>CHST7_HUMAN (Q9NS84) Carbohydrate sulfotransferase 7 (EC 2.8.2.17) (EC 2.8.2.-)|
           (Chondroitin 6-sulfotransferase 2) (C6ST-2)
           (N-acetylglucosamine 6-O-sulfotransferase 1)
           (GlcNAc6ST-4)
           (Galactose/N-acetylglucosamine/N-acetylglucosamine
           6-O-sulfotransferase
          Length = 486

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 311 LLAPELLRQESDLENAGSKCPDMGNSVGEETLNAAATSGMESG 183
           LL P +L    D +     CP +  S+G  +L AAA    E G
Sbjct: 26  LLVPSVLDGGRDGDKGAEHCPGLQRSLGVWSLEAAAAGEREQG 68

>CSMD2_HUMAN (Q7Z408) CUB and sushi domain-containing protein 2 (CUB and sushi|
            multiple domains protein 2)
          Length = 3487

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 5    QISCSFFPLIAGTLQRTCSKNGSWN 79
            + SC    ++ G+ +RTC  NGSW+
Sbjct: 2858 RFSCEAGHVLRGSSERTCQANGSWS 2882

>CU077_HUMAN (Q9NV44) Protein C21orf77|
          Length = 126

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 203 WQQHSEFPHPQNCPCQGICFQRFQDH 280
           W     FP PQ CPC   CF     H
Sbjct: 7   WHLPGLFPRPQFCPCSCGCFLHCGSH 32

>KNOX2_MAIZE (P56660) Homeobox protein knotted-1-like 2 (Fragment)|
          Length = 88

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 182 AQTPSHWWQQHSEFPHP 232
           A T   WWQ HS++P+P
Sbjct: 38  ASTLKAWWQAHSKWPYP 54

>CU077_PANTR (Q68US2) Protein C21orf77 homolog|
          Length = 126

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 203 WQQHSEFPHPQNCPCQGICFQRFQDH 280
           W     FP PQ CPC   CF     H
Sbjct: 7   WHLPGLFPKPQFCPCSCGCFLHCGSH 32

>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2132

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -3

Query: 251  PDMGNSVGEETLNAAATSGMESGPVDDTAT*GPNHLIKTSKFSP 120
            P   + V EET      SG  SG  D TAT G   L + S   P
Sbjct: 1358 PFGSSGVSEETSGIPEISGQPSGTPDTTATSGVTELNELSSGQP 1401

>KNOX1_MAIZE (P56659) Homeobox protein knotted-1-like 1 (Fragment)|
          Length = 88

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +2

Query: 200 WWQQHSEFPHP 232
           WWQ+HS++P+P
Sbjct: 44  WWQEHSKWPYP 54

>VT2_MYXVL (P29825) Tumor necrosis factor soluble receptor precursor (Protein|
           T2)
          Length = 326

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 3/23 (13%)
 Frame = -3

Query: 182 PVDDTA---T*GPNHLIKTSKFS 123
           PV+DT+   T GPN ++KTS+FS
Sbjct: 179 PVNDTSCTTTAGPNEVVKTSEFS 201

>SUB2_CRYNE (Q5KNA3) ATP-dependent RNA helicase SUB2 (EC 3.6.1.-)|
          Length = 442

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = -3

Query: 320 RDFLLAPELLRQESDL 273
           RDFLL PELLR  SDL
Sbjct: 62  RDFLLKPELLRAISDL 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,324,612
Number of Sequences: 219361
Number of extensions: 1159293
Number of successful extensions: 2957
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2955
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)