>gb|AC092469.10| Homo sapiens 12 BAC RP11-440E12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 104395

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 13    atgttccttttttcctctcattg 35
             |||||||||||||||||||||||
Sbjct: 32241 atgttccttttttcctctcattg 32263

>gb|AC165242.6| Mus musculus chromosome 3, clone RP24-98F15, complete sequence
          Length = 185876

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 12     catgttccttttttcctctcat 33
              ||||||||||||||||||||||
Sbjct: 149832 catgttccttttttcctctcat 149811

>gb|AC018437.10| Homo sapiens chromosome 8, clone RP11-77B22, complete sequence
          Length = 192586

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 14     tgttccttttttcctctcattg 35
              ||||||||||||||||||||||
Sbjct: 114100 tgttccttttttcctctcattg 114121

>gb|AC115014.6| Mus musculus chromosome 3, clone RP24-196G4, complete sequence
          Length = 169069

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 12     catgttccttttttcctctcat 33
              ||||||||||||||||||||||
Sbjct: 119652 catgttccttttttcctctcat 119673

>gb|AF527060.1| Oncorhynchus tshawytscha virus-inducible stress protein (VISP)
           mRNA, complete cds
          Length = 2744

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 51  gcacgtgttcaaagaatggcagctgg 76
           |||||||||| |||||||||||||||
Sbjct: 258 gcacgtgttccaagaatggcagctgg 283

>gb|L18877.1|HUMMAGE12X Human MAGE-12 protein gene, complete cds
          Length = 4523

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 177  cactggcccagactccatcccactgg 202
            |||||||||||||||| |||||||||
Sbjct: 3955 cactggcccagactccctcccactgg 3930

>ref|XM_635030.1| Dictyostelium discoideum hypothetical protein (DDB0218392), partial
            mRNA
          Length = 9072

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 99   tattacattcacaaaatgtac 119
            |||||||||||||||||||||
Sbjct: 6080 tattacattcacaaaatgtac 6100

>gb|AC009847.9| Drosophila melanogaster clone BACR03L10, complete sequence
          Length = 180498

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 246   gtcagggcatttgcttccagcgttt 270
             |||||||||||||||| ||||||||
Sbjct: 97958 gtcagggcatttgcttgcagcgttt 97982

>emb|CR394546.9| Zebrafish DNA sequence from clone CH211-212I14 in linkage group 16,
             complete sequence
          Length = 174132

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 219   agtttcctcacccacagaatt 239
             |||||||||||||||||||||
Sbjct: 47095 agtttcctcacccacagaatt 47115

>gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequence
          Length = 158596

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     tcatgttccttttttcctctc 31
              |||||||||||||||||||||
Sbjct: 144689 tcatgttccttttttcctctc 144709

>gb|AE003785.4| Drosophila melanogaster chromosome 2R, section 4 of 73 of the complete
              sequence
          Length = 301132

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 246    gtcagggcatttgcttccagcgttt 270
              |||||||||||||||| ||||||||
Sbjct: 235004 gtcagggcatttgcttgcagcgttt 234980

>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 292     agcagctctggtgccaaaaggaaa 315
               |||||||||||||| |||||||||
Sbjct: 2603355 agcagctctggtgcaaaaaggaaa 2603332

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 292     agcagctctggtgccaaaaggaaa 315
               |||||||||||||| |||||||||
Sbjct: 2604214 agcagctctggtgcaaaaaggaaa 2604191

>ref|NM_177474.2| Mus musculus DNA segment, Chr 19, Brigham & Women's Genetics 1357
            expressed (D19Bwg1357e), mRNA
          Length = 2284

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 266  cgttttcaagatcactttcctgtc 289
            |||||||| |||||||||||||||
Sbjct: 1197 cgttttcacgatcactttcctgtc 1174

>gb|AC006480.3| Homo sapiens BAC clone RP11-166O4 from 7, complete sequence
          Length = 159752

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      cacaaatctcatgttccttt 22
              ||||||||||||||||||||
Sbjct: 116994 cacaaatctcatgttccttt 117013

>emb|BX511309.12| Zebrafish DNA sequence from clone CH211-153A19 in linkage group 17,
             complete sequence
          Length = 70474

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 22    ttttcctctcattgctggaactttacaa 49
             ||||||||||||||||| | ||||||||
Sbjct: 47360 ttttcctctcattgctgtagctttacaa 47333

>gb|AC124973.8| Mus musculus strain C57BL/6J clone rp23-329l13 map 19, complete
             sequence
          Length = 199006

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 266   cgttttcaagatcactttcctgtc 289
             |||||||| |||||||||||||||
Sbjct: 42272 cgttttcacgatcactttcctgtc 42249

>gb|BC041111.1| Mus musculus mRNA similar to KIAA0020 gene product (cDNA clone
            IMAGE:4502201)
          Length = 3489

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 266  cgttttcaagatcactttcctgtc 289
            |||||||| |||||||||||||||
Sbjct: 1175 cgttttcacgatcactttcctgtc 1152

>emb|Z94161.5|HSN102C10 Human DNA sequence from clone LL22NC03-102C10 on chromosome 22q13
             Contains the first exon of the PPARA gene for peroxisome
             proliferative activated receptor alpha, an EST, GSSs and a
             putative CpG island, complete sequence
          Length = 44134

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   agtttcctcacccacagaat 238
             ||||||||||||||||||||
Sbjct: 40853 agtttcctcacccacagaat 40834

>emb|AL158087.12| Human DNA sequence from clone RP5-952N6 on chromosome 1p31.3-32.3
              Contains the 3' end of a novel gene and the 3' end of the
              PTGER3 gene for prostaglandin E receptor 3 (subtype EP3),
              complete sequence
          Length = 152689

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 7      aatctcatgttccttttttcctct 30
              |||||||||||||||||| |||||
Sbjct: 125842 aatctcatgttcctttttccctct 125865

>emb|AL138752.5| Human DNA sequence from clone RP11-3J10 on chromosome 9p12-13.3 Contains
              the 3' end of the SHB gene for SHB (Src homology 2 domain
              containing) adaptor protein B, the MCART1 gene for
              mitochondrial carrier triple repeat 1 (MGC14836), a novel
              gene, a novel pseudogene, a phosphoribosylaminoimidazole
              carboxylase, phosphoribosylaminoimidazole
              succinocarboxamide synthetase (PAICS) pseudogene, a novel
              gene (MGC10765,FLJ23201), a mitochondrial ribosomal protein
              S10 (MRP-S10, FLJ10567, PNAS-122) (MRPS10) psueodgene, the
              gene for exosome component RRP40, a novel gene (FLJ31455)
              and four CpG islands, complete sequence
          Length = 189271

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      acacaaatctcatgttcctt 21
              ||||||||||||||||||||
Sbjct: 166143 acacaaatctcatgttcctt 166124

>emb|CR545472.6| Zebrafish DNA sequence from clone DKEYP-32B1 in linkage group 5,
             complete sequence
          Length = 75199

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   tttcctcacccacagaattg 240
             ||||||||||||||||||||
Sbjct: 21647 tttcctcacccacagaattg 21666

>gb|AC084768.4| Homo sapiens chromosome 8, clone RP11-281H11, complete sequence
          Length = 173677

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    acccacagaattgcccatgt 247
              ||||||||||||||||||||
Sbjct: 112297 acccacagaattgcccatgt 112316

>gb|AY065660.1| Bos taurus alpha1,3-galactosyltransferase gene, exons 5, 6, and 7 and
            partial cds
          Length = 2386

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  tggtggcagcagcattcaga 219
            ||||||||||||||||||||
Sbjct: 1681 tggtggcagcagcattcaga 1700

>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 16      ttccttttttcctctcattgctgg 39
               |||||||||||||||| |||||||
Sbjct: 2046723 ttccttttttcctctctttgctgg 2046700

>dbj|AK141893.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130056I09 product:Hypothetical
            pumilio-family RNA binding domains, full insert sequence
          Length = 3463

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 266  cgttttcaagatcactttcctgtc 289
            |||||||| |||||||||||||||
Sbjct: 1195 cgttttcacgatcactttcctgtc 1172

>gb|BC016186.1| Mus musculus DNA segment, Chr 19, Brigham & Women's Genetics 1357
            expressed, mRNA (cDNA clone IMAGE:4482598), partial cds
          Length = 1762

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 266  cgttttcaagatcactttcctgtc 289
            |||||||| |||||||||||||||
Sbjct: 1210 cgttttcacgatcactttcctgtc 1187

>dbj|AK088081.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430003J02
            product:hypothetical Pumilio-family RNA binding domains
            (aka PUM-HD, Pumilio homology domain) containing protein,
            full insert sequence
          Length = 2102

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 266  cgttttcaagatcactttcctgtc 289
            |||||||| |||||||||||||||
Sbjct: 1192 cgttttcacgatcactttcctgtc 1169

>dbj|AK050829.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030023H24 product:hypothetical
            Lysine-rich region/Pumilio-family RNA binding domains
            (aka PUM-HD, Pumilio homology domain) containing protein,
            full insert sequence
          Length = 2284

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 266  cgttttcaagatcactttcctgtc 289
            |||||||| |||||||||||||||
Sbjct: 1197 cgttttcacgatcactttcctgtc 1174

>dbj|AK031451.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
           enriched library, clone:6030434H13 product:hypothetical
           Pumilio-family RNA binding domains (aka PUM-HD, Pumilio
           homology domain) containing protein, full insert
           sequence
          Length = 3057

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 cgttttcaagatcactttcctgtc 289
           |||||||| |||||||||||||||
Sbjct: 493 cgttttcacgatcactttcctgtc 470

>gb|BC052686.1| Mus musculus DNA segment, Chr 19, Brigham & Women's Genetics 1357
            expressed, mRNA (cDNA clone IMAGE:30073963), complete cds
          Length = 1745

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 266  cgttttcaagatcactttcctgtc 289
            |||||||| |||||||||||||||
Sbjct: 1148 cgttttcacgatcactttcctgtc 1125

>ref|NM_177511.1| Bos taurus alpha-galactosyltransferase 1 (glycoprotein) (GGTA1),
           mRNA
          Length = 1655

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 tggtggcagcagcattcaga 219
           ||||||||||||||||||||
Sbjct: 597 tggtggcagcagcattcaga 616

>dbj|AK172872.1| Mus musculus mRNA for mKIAA0020 protein
          Length = 1617

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 cgttttcaagatcactttcctgtc 289
           |||||||| |||||||||||||||
Sbjct: 703 cgttttcacgatcactttcctgtc 680

>emb|BX004877.10| Zebrafish DNA sequence from clone DKEY-7L19 in linkage group 17,
            complete sequence
          Length = 249239

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 22   ttttcctctcattgctggaactttacaa 49
            ||||||||||||||||| | ||||||||
Sbjct: 4593 ttttcctctcattgctgtagctttacaa 4620

>emb|AL669921.13| Mouse DNA sequence from clone RP23-67P9 on chromosome 2, complete
              sequence
          Length = 203592

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    ctggcccagactccatccca 198
              ||||||||||||||||||||
Sbjct: 193061 ctggcccagactccatccca 193080

>gb|J04989.1|BOVGSTA Bovine alpha 1-3 galactosyltransferase mRNA completed cds
          Length = 1828

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 tggtggcagcagcattcaga 219
           ||||||||||||||||||||
Sbjct: 597 tggtggcagcagcattcaga 616


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,639,928
Number of Sequences: 3902068
Number of extensions: 3639928
Number of successful extensions: 76998
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76916
Number of HSP's gapped (non-prelim): 82
length of query: 352
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 330
effective length of database: 17,147,199,772
effective search space: 5658575924760
effective search space used: 5658575924760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)