Clone Name | rbastl43g07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK069115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008H02, full insert sequence Length = 2846 Score = 73.8 bits (37), Expect = 4e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 397 tagtactcccagatacgcataaacttgtcatcaaagcccagggccaaaattttgtctttg 456 ||||||||||| |||| || ||||| |||||||||||||||||||||||||| ||||| Sbjct: 2569 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattttatcttta 2510 Query: 457 ttggc 461 ||||| Sbjct: 2509 ttggc 2505 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 328 ggacgagagaaaacaacctggtaatctccaag 359 ||||||||||| |||| |||||| |||||||| Sbjct: 2638 ggacgagagaatacaatctggtagtctccaag 2607
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 397 tagtactcccagatacgcataaacttgtcatcaaagcccagggccaaaatttt 449 ||||||||||| |||| || ||||| |||||||||||||||||||||||||| Sbjct: 9539455 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaatttt 9539403
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 397 tagtactcccagatacgcataaacttgtcatcaaagcccagggccaaaatttt 449 ||||||||||| |||| || ||||| |||||||||||||||||||||||||| Sbjct: 9539340 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaatttt 9539288
>emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111_C09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165137 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 397 tagtactcccagatacgcataaacttgtcatcaaagcccagggccaaaatttt 449 ||||||||||| |||| || ||||| |||||||||||||||||||||||||| Sbjct: 2766 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaatttt 2714
>emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on chromosome 10 Contains the 5' end of the PPP3CB gene for protein phosphatase 3 (formerly 2B) catalytic subunit beta isoform (calcineurin A beta), two novel genes (FLJ37318), the 3' end of a novel gene, a ribosomal protein S26 (RPS26) pseudogene and a CpG island, complete sequence Length = 152161 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 aaaacaacctggtaatctccaa 358 |||||||||||||||||||||| Sbjct: 43260 aaaacaacctggtaatctccaa 43281
>gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, complete sequence Length = 190681 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 aaaacaacctggtaatctccaa 358 |||||||||||||||||||||| Sbjct: 177522 aaaacaacctggtaatctccaa 177501
>gb|AC155957.2| Xenopus tropicalis clone CH216-18G23, complete sequence Length = 89687 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 tttcatgattaaaacaagaag 165 ||||||||||||||||||||| Sbjct: 10526 tttcatgattaaaacaagaag 10546
>gb|AC132116.3| Mus musculus BAC clone RP24-158K7 from chromosome 2, complete sequence Length = 165307 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 138 ctaaacatttcatgattaaaa 158 ||||||||||||||||||||| Sbjct: 53815 ctaaacatttcatgattaaaa 53795
>gb|AC122835.3| Mus musculus BAC clone RP23-187I18 from 3, complete sequence Length = 218449 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 taaacatttcatgattaaaac 159 ||||||||||||||||||||| Sbjct: 115533 taaacatttcatgattaaaac 115553
>gb|AC155993.2| Xenopus tropicalis clone ISB1-298C4, complete sequence Length = 89687 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 tttcatgattaaaacaagaag 165 ||||||||||||||||||||| Sbjct: 10526 tttcatgattaaaacaagaag 10546
>emb|Z99118.2|BSUB0015 Bacillus subtilis complete genome (section 15 of 21): from 2812801 to 3013507 Length = 200707 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 gatatcaaagcaacaaaccag 51 ||||||||||||||||||||| Sbjct: 124738 gatatcaaagcaacaaaccag 124718
>emb|Z75208.1|BSZ75208 B.subtilis genomic sequence 89009bp Length = 89009 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 gatatcaaagcaacaaaccag 51 ||||||||||||||||||||| Sbjct: 27465 gatatcaaagcaacaaaccag 27485
>emb|X89810.1|BSARALMNP B.subtilis DNA for araABDLMNPQ-abfA operon Length = 6811 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 gatatcaaagcaacaaaccag 51 ||||||||||||||||||||| Sbjct: 6527 gatatcaaagcaacaaaccag 6547
>emb|AL929030.7| Zebrafish DNA sequence from clone CH211-69M14 in linkage group 20, complete sequence Length = 173192 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 aaactaaacatttcatgatta 155 ||||||||||||||||||||| Sbjct: 166552 aaactaaacatttcatgatta 166532
>emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, complete sequence Length = 267826 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 aaactaaacatttcatgatta 155 ||||||||||||||||||||| Sbjct: 59222 aaactaaacatttcatgatta 59202
>emb|AL772214.3| Mouse DNA sequence from clone RP23-370C18 on chromosome 2, complete sequence Length = 181349 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 ctaaacatttcatgattaaaa 158 ||||||||||||||||||||| Sbjct: 156283 ctaaacatttcatgattaaaa 156303
>gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome 1, complete sequence Length = 185692 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 aaactaaacatttcatgatt 154 |||||||||||||||||||| Sbjct: 146120 aaactaaacatttcatgatt 146101
>gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosome 7, complete sequence Length = 204278 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 caaagcaacaaaccagttccttcc 59 |||||||| ||||||||||||||| Sbjct: 141132 caaagcaaaaaaccagttccttcc 141155
>emb|CR759945.8| Zebrafish DNA sequence from clone CH211-167E4 in linkage group 13, complete sequence Length = 146960 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 atgaaaactaaacatttcat 150 |||||||||||||||||||| Sbjct: 88211 atgaaaactaaacatttcat 88192
>emb|AL161738.15| Human DNA sequence from clone RP11-549G1 on chromosome 1q31.2-32.1, complete sequence Length = 148844 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 aaacaagcagcagagaatat 392 |||||||||||||||||||| Sbjct: 4248 aaacaagcagcagagaatat 4267
>emb|BX255277.5| Mouse DNA sequence from clone RP23-478B14 on chromosome 11, complete sequence Length = 169765 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 gctaaggtagcacttgcata 106 |||||||||||||||||||| Sbjct: 87568 gctaaggtagcacttgcata 87549
>gb|AC026122.14| Homo sapiens 12 BAC RP11-902D13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184834 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 attaaaacaagaagatagat 171 |||||||||||||||||||| Sbjct: 94080 attaaaacaagaagatagat 94099
>gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, complete sequence Length = 257730 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 aaactaaacatttcatgatt 154 |||||||||||||||||||| Sbjct: 100173 aaactaaacatttcatgatt 100154
>emb|AL772273.11| Zebrafish DNA sequence from clone CH211-153P8, complete sequence Length = 171830 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 atgaaaactaaacatttcat 150 |||||||||||||||||||| Sbjct: 44228 atgaaaactaaacatttcat 44247
>gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202i7, complete sequence Length = 226567 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gatagccatgaaaactaaac 143 |||||||||||||||||||| Sbjct: 38449 gatagccatgaaaactaaac 38468 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,269,541 Number of Sequences: 3902068 Number of extensions: 4269541 Number of successful extensions: 82183 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82103 Number of HSP's gapped (non-prelim): 80 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)