ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK069115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
4emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111... 66 1e-07
5emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on ch... 44 0.40
6gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, com... 44 0.40
7gb|AC155957.2| Xenopus tropicalis clone CH216-18G23, complete se... 42 1.6
8gb|AC132116.3| Mus musculus BAC clone RP24-158K7 from chromosome... 42 1.6
9gb|AC122835.3| Mus musculus BAC clone RP23-187I18 from 3, comple... 42 1.6
10gb|AC155993.2| Xenopus tropicalis clone ISB1-298C4, complete seq... 42 1.6
11emb|Z99118.2|BSUB0015 Bacillus subtilis complete genome (section... 42 1.6
12emb|Z75208.1|BSZ75208 B.subtilis genomic sequence 89009bp 42 1.6
13emb|X89810.1|BSARALMNP B.subtilis DNA for araABDLMNPQ-abfA operon 42 1.6
14emb|AL929030.7| Zebrafish DNA sequence from clone CH211-69M14 in... 42 1.6
15emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, co... 42 1.6
16emb|AL772214.3| Mouse DNA sequence from clone RP23-370C18 on chr... 42 1.6
17gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome ... 40 6.3
18gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosom... 40 6.3
19emb|CR759945.8| Zebrafish DNA sequence from clone CH211-167E4 in... 40 6.3
20emb|AL161738.15| Human DNA sequence from clone RP11-549G1 on chr... 40 6.3
21emb|BX255277.5| Mouse DNA sequence from clone RP23-478B14 on chr... 40 6.3
22gb|AC026122.14| Homo sapiens 12 BAC RP11-902D13 (Roswell Park Ca... 40 6.3
23gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, com... 40 6.3
24emb|AL772273.11| Zebrafish DNA sequence from clone CH211-153P8, ... 40 6.3
25gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone... 40 6.3

>dbj|AK069115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008H02, full
            insert sequence
          Length = 2846

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                        
Query: 397  tagtactcccagatacgcataaacttgtcatcaaagcccagggccaaaattttgtctttg 456
            |||||||||||  |||| || ||||| |||||||||||||||||||||||||| ||||| 
Sbjct: 2569 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattttatcttta 2510

                 
Query: 457  ttggc 461
            |||||
Sbjct: 2509 ttggc 2505



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 328  ggacgagagaaaacaacctggtaatctccaag 359
            ||||||||||| |||| |||||| ||||||||
Sbjct: 2638 ggacgagagaatacaatctggtagtctccaag 2607



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                    
Query: 397     tagtactcccagatacgcataaacttgtcatcaaagcccagggccaaaatttt 449
               |||||||||||  |||| || ||||| ||||||||||||||||||||||||||
Sbjct: 9539455 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaatttt 9539403



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                    
Query: 397     tagtactcccagatacgcataaacttgtcatcaaagcccagggccaaaatttt 449
               |||||||||||  |||| || ||||| ||||||||||||||||||||||||||
Sbjct: 9539340 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaatttt 9539288



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>emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111_C09 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 165137

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 397  tagtactcccagatacgcataaacttgtcatcaaagcccagggccaaaatttt 449
            |||||||||||  |||| || ||||| ||||||||||||||||||||||||||
Sbjct: 2766 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaatttt 2714



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>emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on chromosome 10 Contains the
             5' end of the PPP3CB gene for protein phosphatase 3
             (formerly 2B) catalytic subunit beta isoform (calcineurin
             A beta), two novel genes (FLJ37318), the 3' end of a novel
             gene, a ribosomal protein S26 (RPS26) pseudogene and a CpG
             island, complete sequence
          Length = 152161

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 337   aaaacaacctggtaatctccaa 358
             ||||||||||||||||||||||
Sbjct: 43260 aaaacaacctggtaatctccaa 43281



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>gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, complete sequence
          Length = 190681

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 337    aaaacaacctggtaatctccaa 358
              ||||||||||||||||||||||
Sbjct: 177522 aaaacaacctggtaatctccaa 177501



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>gb|AC155957.2| Xenopus tropicalis clone CH216-18G23, complete sequence
          Length = 89687

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   tttcatgattaaaacaagaag 165
             |||||||||||||||||||||
Sbjct: 10526 tttcatgattaaaacaagaag 10546



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>gb|AC132116.3| Mus musculus BAC clone RP24-158K7 from chromosome 2, complete sequence
          Length = 165307

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 138   ctaaacatttcatgattaaaa 158
             |||||||||||||||||||||
Sbjct: 53815 ctaaacatttcatgattaaaa 53795



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>gb|AC122835.3| Mus musculus BAC clone RP23-187I18 from 3, complete sequence
          Length = 218449

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 139    taaacatttcatgattaaaac 159
              |||||||||||||||||||||
Sbjct: 115533 taaacatttcatgattaaaac 115553



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>gb|AC155993.2| Xenopus tropicalis clone ISB1-298C4, complete sequence
          Length = 89687

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   tttcatgattaaaacaagaag 165
             |||||||||||||||||||||
Sbjct: 10526 tttcatgattaaaacaagaag 10546



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>emb|Z99118.2|BSUB0015 Bacillus subtilis complete genome (section 15 of 21): from 2812801 to
              3013507
          Length = 200707

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 31     gatatcaaagcaacaaaccag 51
              |||||||||||||||||||||
Sbjct: 124738 gatatcaaagcaacaaaccag 124718



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>emb|Z75208.1|BSZ75208 B.subtilis genomic sequence 89009bp
          Length = 89009

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    gatatcaaagcaacaaaccag 51
             |||||||||||||||||||||
Sbjct: 27465 gatatcaaagcaacaaaccag 27485



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>emb|X89810.1|BSARALMNP B.subtilis DNA for araABDLMNPQ-abfA operon
          Length = 6811

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 31   gatatcaaagcaacaaaccag 51
            |||||||||||||||||||||
Sbjct: 6527 gatatcaaagcaacaaaccag 6547



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>emb|AL929030.7| Zebrafish DNA sequence from clone CH211-69M14 in linkage group 20,
              complete sequence
          Length = 173192

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 135    aaactaaacatttcatgatta 155
              |||||||||||||||||||||
Sbjct: 166552 aaactaaacatttcatgatta 166532



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>emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, complete sequence
          Length = 267826

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   aaactaaacatttcatgatta 155
             |||||||||||||||||||||
Sbjct: 59222 aaactaaacatttcatgatta 59202



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>emb|AL772214.3| Mouse DNA sequence from clone RP23-370C18 on chromosome 2, complete
              sequence
          Length = 181349

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 138    ctaaacatttcatgattaaaa 158
              |||||||||||||||||||||
Sbjct: 156283 ctaaacatttcatgattaaaa 156303



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>gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome 1, complete sequence
          Length = 185692

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    aaactaaacatttcatgatt 154
              ||||||||||||||||||||
Sbjct: 146120 aaactaaacatttcatgatt 146101



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>gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosome 7, complete sequence
          Length = 204278

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 36     caaagcaacaaaccagttccttcc 59
              |||||||| |||||||||||||||
Sbjct: 141132 caaagcaaaaaaccagttccttcc 141155



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>emb|CR759945.8| Zebrafish DNA sequence from clone CH211-167E4 in linkage group 13,
             complete sequence
          Length = 146960

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   atgaaaactaaacatttcat 150
             ||||||||||||||||||||
Sbjct: 88211 atgaaaactaaacatttcat 88192



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>emb|AL161738.15| Human DNA sequence from clone RP11-549G1 on chromosome 1q31.2-32.1,
            complete sequence
          Length = 148844

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  aaacaagcagcagagaatat 392
            ||||||||||||||||||||
Sbjct: 4248 aaacaagcagcagagaatat 4267



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>emb|BX255277.5| Mouse DNA sequence from clone RP23-478B14 on chromosome 11, complete
             sequence
          Length = 169765

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    gctaaggtagcacttgcata 106
             ||||||||||||||||||||
Sbjct: 87568 gctaaggtagcacttgcata 87549



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>gb|AC026122.14| Homo sapiens 12 BAC RP11-902D13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 184834

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   attaaaacaagaagatagat 171
             ||||||||||||||||||||
Sbjct: 94080 attaaaacaagaagatagat 94099



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>gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, complete sequence
          Length = 257730

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    aaactaaacatttcatgatt 154
              ||||||||||||||||||||
Sbjct: 100173 aaactaaacatttcatgatt 100154



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>emb|AL772273.11| Zebrafish DNA sequence from clone CH211-153P8, complete sequence
          Length = 171830

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   atgaaaactaaacatttcat 150
             ||||||||||||||||||||
Sbjct: 44228 atgaaaactaaacatttcat 44247



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>gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202i7, complete
             sequence
          Length = 226567

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   gatagccatgaaaactaaac 143
             ||||||||||||||||||||
Sbjct: 38449 gatagccatgaaaactaaac 38468


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,269,541
Number of Sequences: 3902068
Number of extensions: 4269541
Number of successful extensions: 82183
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82103
Number of HSP's gapped (non-prelim): 80
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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