ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl43g06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC154033.1| Solanum demissum chromosome 5 clone PGEC132D05 map MAP_LOC, complete sequence Length = 118497 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaaaa 150 ||||||||||||||||||||| Sbjct: 41417 tttatttttatttaaagaaaa 41437
>gb|AC151803.1| Solanum demissum chromosome 5 BAC PGEC979H09 genomic sequence, complete sequence Length = 110954 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaaaa 150 ||||||||||||||||||||| Sbjct: 47126 tttatttttatttaaagaaaa 47146
>emb|AL645982.26| Mouse DNA sequence from clone DN-452A22 on chromosome 3 Contains the 5' end of the Fgf2 gene for fibroblast growth factor 2, a novel gene (A930011G24RIK), a mitochondrial ribosomal protein S33 (Mrps33) pseudogene, a novel gene (gene model 1805 (NCBI) (Gm1805)), the Cetn4 gene for centrin 4, a novel gene, the 5' end of the Il21 gene for interleukin 21 and a CpG island, complete sequence Length = 133023 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaaaa 150 ||||||||||||||||||||| Sbjct: 107274 tttatttttatttaaagaaaa 107294
>emb|BX247869.21| Zebrafish DNA sequence from clone CH211-67D2 in linkage group 21, complete sequence Length = 181119 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 attactaattgattgaatggg 67 ||||||||||||||||||||| Sbjct: 103352 attactaattgattgaatggg 103372
>emb|BX004761.10| Zebrafish DNA sequence from clone DKEY-11I10 in linkage group 20 Contains a novel gene and a CpG island, complete sequence Length = 132841 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 gtttatttttatttaaagaaa 149 ||||||||||||||||||||| Sbjct: 33250 gtttatttttatttaaagaaa 33270
>gb|AC104161.2| Homo sapiens chromosome 3 clone RP11-32J15, complete sequence Length = 166659 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaaaa 150 ||||||||||||||||||||| Sbjct: 99349 tttatttttatttaaagaaaa 99369
>gb|AC097662.5| Homo sapiens BAC clone RP11-563C6 from 2, complete sequence Length = 206624 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 gtttatttttatttaaagaaa 149 ||||||||||||||||||||| Sbjct: 58243 gtttatttttatttaaagaaa 58263
>emb|AL662862.16| Mouse DNA sequence from clone CT7-139P23 on chromosome 3, complete sequence Length = 120808 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaaaa 150 ||||||||||||||||||||| Sbjct: 26274 tttatttttatttaaagaaaa 26294
>emb|AL691478.5| Mouse DNA sequence from clone RP23-137F6 on chromosome 3, complete sequence Length = 120928 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaaaa 150 ||||||||||||||||||||| Sbjct: 87429 tttatttttatttaaagaaaa 87449
>ref|NM_021999.2| Homo sapiens integral membrane protein 2B (ITM2B), mRNA Length = 1896 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 1821 ttatttttatttaaagaaaa 1802
>gb|AC102232.12| Mus musculus chromosome 18, clone RP24-76F12, complete sequence Length = 232199 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tatttttatttaaagaaaag 151 |||||||||||||||||||| Sbjct: 202914 tatttttatttaaagaaaag 202895
>gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromosome 6, complete sequence Length = 196547 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 10455 ttatttttatttaaagaaaa 10474
>gb|U53336.1| Caenorhabditis elegans cosmid K07C11, complete sequence Length = 31889 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaaa 149 |||||||||||||||||||| Sbjct: 21037 tttatttttatttaaagaaa 21056
>emb|CR749774.14| Zebrafish DNA sequence from clone CH211-167E20 in linkage group 8, complete sequence Length = 132644 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 actgaatggtacggtacagtagag 39 |||||||||||||||||| ||||| Sbjct: 80515 actgaatggtacggtacaatagag 80538
>emb|AL357395.13| Human DNA sequence from clone RP11-31L23 on chromosome 10 Contains the TLX1 gene for T-cell leukemia homeobox 1, the 5' end of a novel gene, the C10orf1 gene for chromosome 10 open reading frame 1 and four CpG islands, complete sequence Length = 51099 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaaa 149 |||||||||||||||||||| Sbjct: 13451 tttatttttatttaaagaaa 13470
>gb|AF086918.1| Homo sapiens E3-16 mRNA, complete cds Length = 1752 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 1727 ttatttttatttaaagaaaa 1708
>gb|AY341247.1| Homo sapiens integral membrane protein 2B (ITM2B) gene, complete cds Length = 31401 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 30040 ttatttttatttaaagaaaa 30021
>emb|AL139322.13| Human DNA sequence from clone RP11-196P14 on chromosome 13 Contains the ITM2B gene for integral membrane protein 2B (BRI FBD E25B E3-16) and a CpG island, complete sequence Length = 120773 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 94260 ttatttttatttaaagaaaa 94241
>emb|AL138742.24| Human DNA sequence from clone RP1-76K10 on chromosome 6 Contains gene KIAA1009 or FLJ13551 and a CpG island, complete sequence Length = 118648 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gactggttattactaattga 58 |||||||||||||||||||| Sbjct: 41423 gactggttattactaattga 41404
>emb|AL137184.15| Human DNA sequence from clone RP3-401D24 on chromosome 6, complete sequence Length = 112124 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 22695 ttatttttatttaaagaaaa 22714
>emb|BX465853.12| Zebrafish DNA sequence from clone DKEY-18F23 in linkage group 23, complete sequence Length = 220945 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaaaagca 153 ||||||||||||||||||| |||| Sbjct: 172635 tttatttttatttaaagaacagca 172658
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaaaagca 153 ||||||||||| |||||||||||| Sbjct: 3000327 tttatttttatgtaaagaaaagca 3000350
>gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromosome 6, complete sequence Length = 158234 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 114855 ttatttttatttaaagaaaa 114874
>emb|BX321875.7| Zebrafish DNA sequence from clone CH211-254C8 in linkage group 16, complete sequence Length = 169994 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 tttttatttaaagaaaagca 153 |||||||||||||||||||| Sbjct: 17597 tttttatttaaagaaaagca 17578
>emb|CR626358.1| full-length cDNA clone CS0DE009YK12 of Placenta of Homo sapiens (human) Length = 1810 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 1752 ttatttttatttaaagaaaa 1733
>emb|CR610712.1| full-length cDNA clone CS0DI061YL18 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1741 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 1741 ttatttttatttaaagaaaa 1722
>emb|CR590893.1| full-length cDNA clone CS0DN004YE20 of Adult brain of Homo sapiens (human) Length = 1764 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 1734 ttatttttatttaaagaaaa 1715
>gb|AC152398.7| Mus musculus chromosome 18, clone RP23-458M2, complete sequence Length = 180614 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tatttttatttaaagaaaag 151 |||||||||||||||||||| Sbjct: 167197 tatttttatttaaagaaaag 167216
>dbj|AB168350.1| Macaca fascicularis testis cDNA clone: QtsA-11432, similar to human integral membrane protein 2B (ITM2B), mRNA, RefSeq: NM_021999.2 Length = 1851 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 1763 ttatttttatttaaagaaaa 1744
>gb|AC092717.2| Drosophila melanogaster, chromosome 2L, region 36D-36E, BAC clone BACR05N10, complete sequence Length = 169600 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 gtttatttttatttaaagaaaagc 152 ||||||||||||||||| |||||| Sbjct: 94491 gtttatttttatttaaaaaaaagc 94468
>ref|NM_072717.2| Caenorhabditis elegans K07C11.9 (K07C11.9) mRNA, complete cds Length = 2215 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 tttatttttatttaaagaaa 149 |||||||||||||||||||| Sbjct: 2208 tttatttttatttaaagaaa 2189
>gb|AF130089.1|AF130089 Homo sapiens clone FLB9440 PRO2550 mRNA, complete cds Length = 2144 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 2083 ttatttttatttaaagaaaa 2064
>gb|AC007173.6|AC007173 Drosophila melanogaster, chromosome 2L, region 36E-, BAC clone BACR01A03, complete sequence Length = 155254 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 gtttatttttatttaaagaaaagc 152 ||||||||||||||||| |||||| Sbjct: 67577 gtttatttttatttaaaaaaaagc 67554
>gb|AF136973.1|AF136973 Homo sapiens putative transmembrane protein E3-16 mRNA, complete cds Length = 1896 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 1821 ttatttttatttaaagaaaa 1802
>gb|AF246221.1|AF246221 Homo sapiens transmembrane protein BRI mRNA, complete cds Length = 1853 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 1786 ttatttttatttaaagaaaa 1767
>emb|BX545918.4| Zebrafish DNA sequence from clone DKEYP-22F11 in linkage group 8, complete sequence Length = 149121 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 gaaataacacaacaaattaa 99 |||||||||||||||||||| Sbjct: 12200 gaaataacacaacaaattaa 12181
>dbj|AK130048.1| Homo sapiens cDNA FLJ26538 fis, clone KDN09296, highly similar to Integral membrane protein 2B Length = 1825 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 1765 ttatttttatttaaagaaaa 1746
>gb|AF152462.1|AF152462 Homo sapiens transmembrane protein BRI (BRI) mRNA, complete cds Length = 1843 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 1776 ttatttttatttaaagaaaa 1757
>gb|AE003658.3| Drosophila melanogaster chromosome 2L, section 67 of 83 of the complete sequence Length = 262745 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 gtttatttttatttaaagaaaagc 152 ||||||||||||||||| |||||| Sbjct: 168226 gtttatttttatttaaaaaaaagc 168203
>gb|DQ307173.1| Glossina morsitans morsitans clone TC1637 serine protease inhibitor 4 (Spn4) mRNA, complete cds Length = 1380 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 1361 ttatttttatttaaagaaaa 1342
>emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on chromosome 2, complete sequence Length = 207724 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaaa 149 |||||||||||||||||||| Sbjct: 91146 tttatttttatttaaagaaa 91165
>emb|AL354926.17| Human DNA sequence from clone RP1-216J23 on chromosome 6, complete sequence Length = 163140 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ttatttttatttaaagaaaa 150 |||||||||||||||||||| Sbjct: 64981 ttatttttatttaaagaaaa 65000
>gb|AC121147.8| Mus musculus chromosome 3, clone RP24-369O15, complete sequence Length = 178352 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 ttatttttatttaaagaaa 149 ||||||||||||||||||| Sbjct: 28068 ttatttttatttaaagaaa 28086
>gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, complete sequence Length = 164968 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 tttttatttaaagaaaagc 152 ||||||||||||||||||| Sbjct: 125738 tttttatttaaagaaaagc 125756
>ref|NM_018672.2| Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 5 (ABCA5), transcript variant 1, mRNA Length = 7044 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 6323 ttttatttaaagaaaagca 6305
>gb|AC149231.2| Pan troglodytes BAC clone CH251-481H1 from 7, complete sequence Length = 217836 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 44529 tttatttttatttaaagaa 44511
>ref|NM_172232.1| Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 5 (ABCA5), transcript variant 2, mRNA Length = 5939 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 5218 ttttatttaaagaaaagca 5200
>gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, complete sequence Length = 184265 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 129 gtttatttttatttaaagaaaag 151 |||| |||||||||||||||||| Sbjct: 115854 gtttgtttttatttaaagaaaag 115876
>emb|CR450706.7| Zebrafish DNA sequence from clone CH211-14K11 in linkage group 25, complete sequence Length = 192643 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 aaataacacaacaaattaa 99 ||||||||||||||||||| Sbjct: 128617 aaataacacaacaaattaa 128635
>gb|AC124200.4| Mus musculus BAC clone RP23-328F5 from chromosome 8, complete sequence Length = 215638 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 131 ttatttttatttaaagaaaagca 153 |||||||| |||||||||||||| Sbjct: 10696 ttatttttttttaaagaaaagca 10718
>emb|CR382363.14| Zebrafish DNA sequence from clone DKEY-23P11 in linkage group 25, complete sequence Length = 129281 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 aaataacacaacaaattaa 99 ||||||||||||||||||| Sbjct: 64831 aaataacacaacaaattaa 64849
>emb|BX897727.17| Zebrafish DNA sequence from clone DKEY-90A13 in linkage group 23, complete sequence Length = 236277 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 tttttatttaaagaaaagc 152 ||||||||||||||||||| Sbjct: 212682 tttttatttaaagaaaagc 212700
>gb|AC121585.3| Mus musculus BAC clone RP23-265M4 from 5, complete sequence Length = 195311 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 129 gtttatttttatttaaagaaaag 151 |||| |||||||||||||||||| Sbjct: 58430 gtttctttttatttaaagaaaag 58408
>gb|AE004260.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 168 of 251 of the complete chromosome Length = 11515 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 tggttattactaattgatt 60 ||||||||||||||||||| Sbjct: 8910 tggttattactaattgatt 8892
>gb|U40955.1| Caenorhabditis elegans cosmid F48B9, complete sequence Length = 40014 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 11867 tttatttttatttaaagaa 11885
>gb|AC142338.1| Pan troglodytes BAC clone RP43-41H4 from 7, complete sequence Length = 186208 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 70417 tttatttttatttaaagaa 70435
>gb|AC160553.7| Mus musculus chromosome 7, clone RP23-334C12, complete sequence Length = 191999 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 tttttatttaaagaaaagc 152 ||||||||||||||||||| Sbjct: 53536 tttttatttaaagaaaagc 53554
>emb|AL592494.4| Human DNA sequence from clone RP11-344P13 on chromosome 1 Contains a novel gene, a embigin (Emb) (MGC71745) pseudogene, a mitochondrial translational initiation factor 2 (MTIF2) pseudogene, a novel gene, the 3' end of a novel gene and two CpG islands, complete sequence Length = 165908 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 155833 ttttatttaaagaaaagca 155815
>emb|X07180.1|SPMEI2 Yeast mei2 gene Length = 4560 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 ttgattgaatgggacgtac 73 ||||||||||||||||||| Sbjct: 196 ttgattgaatgggacgtac 178
>gb|AC118273.4| Homo sapiens chromosome 11, clone RP11-107P7, complete sequence Length = 187529 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 132 tatttttatttaaagaaaa 150 ||||||||||||||||||| Sbjct: 66759 tatttttatttaaagaaaa 66741
>emb|AL929356.1|PFA929356 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5 Length = 335050 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 tatttttatttaaagaaaa 150 ||||||||||||||||||| Sbjct: 329947 tatttttatttaaagaaaa 329965
>emb|AL603834.6| Mouse DNA sequence from clone RP23-113D4 on chromosome 11 Contains the Rpa1 gene for replication protein A1, the 5' end of a novel gene and a CpG island, complete sequence Length = 67911 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 tatttttatttaaagaaaa 150 ||||||||||||||||||| Sbjct: 58128 tatttttatttaaagaaaa 58146
>gb|AC160988.3| Mus musculus BAC clone RP23-236A22 from chromosome 14, complete sequence Length = 191733 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 69367 tttatttttatttaaagaa 69385
>emb|BX784028.13| Zebrafish DNA sequence from clone DKEY-40C11 in linkage group 5, complete sequence Length = 230525 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 tatttttatttaaagaaaa 150 ||||||||||||||||||| Sbjct: 36709 tatttttatttaaagaaaa 36727
>gb|AC115085.4| Homo sapiens chromosome 17, clone RP11-280F10, complete sequence Length = 163229 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 158619 ttttatttaaagaaaagca 158601
>gb|AC104127.2| Homo sapiens chromosome 5 clone RP11-69G16, complete sequence Length = 161764 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 132 tatttttatttaaagaaaa 150 ||||||||||||||||||| Sbjct: 153587 tatttttatttaaagaaaa 153569
>gb|AC117746.6| Homo sapiens chromosome 11, clone RP11-159C12, complete sequence Length = 157527 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 tatttttatttaaagaaaa 150 ||||||||||||||||||| Sbjct: 100180 tatttttatttaaagaaaa 100198
>emb|BX005343.18| Zebrafish DNA sequence from clone DKEY-29F2 in linkage group 11, complete sequence Length = 235698 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 47469 tttatttttatttaaagaa 47451
>gb|AC091944.2| Homo sapiens chromosome 5 clone RP11-348M17, complete sequence Length = 194624 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 133 atttttatttaaagaaaag 151 ||||||||||||||||||| Sbjct: 111119 atttttatttaaagaaaag 111101
>dbj|AK094416.1| Homo sapiens cDNA FLJ37097 fis, clone BRACE2018847, moderately similar to ATP-binding cassette, sub-family A member 8 Length = 3347 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 3102 ttttatttaaagaaaagca 3084
>dbj|AK056533.1| Homo sapiens cDNA FLJ31971 fis, clone NT2RP7008137, weakly similar to ATP-BINDING CASSETTE, SUB-FAMILY A, MEMBER 1 Length = 3268 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 3052 ttttatttaaagaaaagca 3034
>emb|BX914203.24| Zebrafish DNA sequence from clone CH211-22E19 in linkage group 11, complete sequence Length = 179563 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 106056 tttatttttatttaaagaa 106074
>gb|AC104637.5| Homo sapiens 3 BAC RP11-387L24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 99960 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 67535 tttatttttatttaaagaa 67553
>gb|AC107223.5| Homo sapiens BAC clone RP11-1289C17 from 4, complete sequence Length = 183515 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 tatttttatttaaagaaaa 150 ||||||||||||||||||| Sbjct: 85515 tatttttatttaaagaaaa 85533
>gb|AC117528.2| Homo sapiens chromosome 5 clone RP11-22C17, complete sequence Length = 144236 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 tatttttatttaaagaaaa 150 ||||||||||||||||||| Sbjct: 63293 tatttttatttaaagaaaa 63311
>gb|AC097654.2| Homo sapiens BAC clone RP11-280K20 from 4, complete sequence Length = 163088 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaa 149 ||||||||||||||||||| Sbjct: 116179 ttatttttatttaaagaaa 116161
>gb|AC093415.2| Homo sapiens chromosome 3 clone RP11-586N22, complete sequence Length = 196641 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 174813 tttatttttatttaaagaa 174795
>gb|AC023926.6| Homo sapiens chromosome 8, clone RP11-9P20, complete sequence Length = 151353 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 134 tttttatttaaagaaaagc 152 ||||||||||||||||||| Sbjct: 27770 tttttatttaaagaaaagc 27752
>gb|AC012238.7| Homo sapiens, clone RP11-16F4, complete sequence Length = 156834 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 134 tttttatttaaagaaaagc 152 ||||||||||||||||||| Sbjct: 150261 tttttatttaaagaaaagc 150243
>gb|AY028897.1| Homo sapiens ATP-binding cassette A5 mRNA, complete cds Length = 6525 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 6115 ttttatttaaagaaaagca 6097
>emb|BX530026.5| Zebrafish DNA sequence from clone DKEY-287G12 in linkage group 12, complete sequence Length = 190980 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 tttttatttaaagaaaagc 152 ||||||||||||||||||| Sbjct: 138005 tttttatttaaagaaaagc 138023
>emb|BX248512.14| Zebrafish DNA sequence from clone CH211-284D12 in linkage group 2, complete sequence Length = 146757 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 tatttttatttaaagaaaa 150 ||||||||||||||||||| Sbjct: 146139 tatttttatttaaagaaaa 146157
>gb|AC154590.2| Mus musculus BAC clone RP23-368L2 from chromosome 14, complete sequence Length = 168428 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 26998 tttatttttatttaaagaa 26980
>gb|AC091857.3| Homo sapiens chromosome 5 clone CTD-2315L13, complete sequence Length = 135299 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaa 149 ||||||||||||||||||| Sbjct: 36618 ttatttttatttaaagaaa 36600
>emb|BX322540.5| Zebrafish DNA sequence from clone CH211-247B3 in linkage group 19, complete sequence Length = 156150 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 131 ttatttttatttaaagaaa 149 ||||||||||||||||||| Sbjct: 42063 ttatttttatttaaagaaa 42045
>gb|AC155939.6| Mus musculus 10 BAC RP24-418P10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 158211 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 tagagactggttattacta 53 ||||||||||||||||||| Sbjct: 91476 tagagactggttattacta 91494
>gb|U66672.1|U66672 Homo sapiens clone EST90625 mRNA sequence Length = 1346 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 1319 ttttatttaaagaaaagca 1301
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 19437122 ccgtttatttttatttaaa 19437104 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 19417465 ccgtttatttttatttaaa 19417483 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 15925135 ccgtttatttttatttaaa 15925117 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 15924792 ccgtttatttttatttaaa 15924774 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 11562527 ccgtttatttttatttaaa 11562509 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 tactaggtgaaagcaaata 120 ||||||||||||||||||| Sbjct: 7975652 tactaggtgaaagcaaata 7975634
>ref|XM_392385.2| PREDICTED: Apis mellifera similar to CG7404-PA, isoform A (LOC408855), mRNA Length = 3054 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 gatgaaataacacaacaaa 95 ||||||||||||||||||| Sbjct: 2798 gatgaaataacacaacaaa 2816
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 7447028 ccgtttatttttatttaaa 7447046
>emb|BX004882.10| Zebrafish DNA sequence from clone CH211-185C9, complete sequence Length = 137477 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 133 atttttatttaaagaaaag 151 ||||||||||||||||||| Sbjct: 28468 atttttatttaaagaaaag 28450
>gb|AC157526.2| Pan troglodytes BAC clone CH251-513A15 from chromosome unknown, complete sequence Length = 188881 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 129 gtttatttttatttaaaga 147 ||||||||||||||||||| Sbjct: 2676 gtttatttttatttaaaga 2658
>gb|AC068726.5|AC068726 Homo sapiens chromosome 15 clone RP11-844G16 map 15q21.3, complete sequence Length = 189308 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 129 gtttatttttatttaaaga 147 ||||||||||||||||||| Sbjct: 106423 gtttatttttatttaaaga 106441
>gb|AC084782.2|AC084782 Homo sapiens chromosome 15 clone RP11-48G14 map 15q21.3, complete sequence Length = 177862 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 129 gtttatttttatttaaaga 147 ||||||||||||||||||| Sbjct: 13203 gtttatttttatttaaaga 13221
>gb|AC170162.2| Phakopsora pachyrhizi clone JGIAFNA-81H1, complete sequence Length = 38194 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 128 cgtttatttttatttaaagaaaa 150 ||||||||||||||||| ||||| Sbjct: 19607 cgtttatttttatttaatgaaaa 19585
>gb|AC005495.2| Homo sapiens chromosome 17, clone RP11-293K20, complete sequence Length = 185252 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 167316 ttttatttaaagaaaagca 167334
>gb|AC024082.6|AC024082 Human Chromosome 7 clone RP11-20M11, complete sequence Length = 157198 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 atgaaataacacaacaaat 96 ||||||||||||||||||| Sbjct: 47443 atgaaataacacaacaaat 47461
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 133 atttttatttaaagaaaag 151 ||||||||||||||||||| Sbjct: 1707022 atttttatttaaagaaaag 1707040
>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1034_C08 Length = 154441 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 116661 ccgtttatttttatttaaa 116643
>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0467G09 Length = 158204 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 22798 ccgtttatttttatttaaa 22780
>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461A06 Length = 136384 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 tactaggtgaaagcaaata 120 ||||||||||||||||||| Sbjct: 47822 tactaggtgaaagcaaata 47804
>dbj|AP004725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0412C04 Length = 146849 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 6959 ccgtttatttttatttaaa 6977
>dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0001B11 Length = 166004 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 153613 ccgtttatttttatttaaa 153631
>emb|BX005135.5| Zebrafish DNA sequence from clone CH211-89P16 in linkage group 11, complete sequence Length = 166622 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 74066 tttatttttatttaaagaa 74048
>emb|BX647447.1|HSM807592 Homo sapiens mRNA; cDNA DKFZp451F117 (from clone DKFZp451F117) Length = 5243 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 2184 ttttatttaaagaaaagca 2166
>emb|BX640746.1|HSM806823 Homo sapiens mRNA; cDNA DKFZp686K07118 (from clone DKFZp686K07118) Length = 4078 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 4047 ttttatttaaagaaaagca 4029
>emb|AL807769.8| Zebrafish DNA sequence from clone CH211-197G8, complete sequence Length = 188344 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 tttttatttaaagaaaagc 152 ||||||||||||||||||| Sbjct: 173733 tttttatttaaagaaaagc 173751
>dbj|AP005512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012O03 Length = 141860 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 105178 ccgtttatttttatttaaa 105160 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 104835 ccgtttatttttatttaaa 104817
>dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0685B10 Length = 148544 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 146908 ccgtttatttttatttaaa 146926
>dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0453D01 Length = 147461 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 31879 ccgtttatttttatttaaa 31861 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 12222 ccgtttatttttatttaaa 12240
>dbj|AK058170.1| Homo sapiens cDNA FLJ25441 fis, clone TST08455 Length = 1560 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 1547 ttttatttaaagaaaagca 1529
>dbj|AP002449.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-773H22, complete sequence Length = 184000 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ccgtttatttttatttaaa 145 ||||||||||||||||||| Sbjct: 37814 ccgtttatttttatttaaa 37796
>dbj|AP003122.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-313I2, complete sequence Length = 137888 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 tatttttatttaaagaaaa 150 ||||||||||||||||||| Sbjct: 91757 tatttttatttaaagaaaa 91775
>dbj|AP006194.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-81G2, complete sequence Length = 147925 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 22142 tttatttttatttaaagaa 22160
>emb|AL805963.23| Mouse DNA sequence from clone RP23-98K7 on chromosome X, complete sequence Length = 233546 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 tatttttatttaaagaaaa 150 ||||||||||||||||||| Sbjct: 26763 tatttttatttaaagaaaa 26781
>emb|AL845487.5| Mouse DNA sequence from clone RP23-288M4 on chromosome 2, complete sequence Length = 120057 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 ttatttttatttaaagaaa 149 ||||||||||||||||||| Sbjct: 98982 ttatttttatttaaagaaa 99000
>emb|AL009227.1|SPAC27D7 S.pombe chromosome I cosmid c27D7 Length = 35892 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 ttgattgaatgggacgtac 73 ||||||||||||||||||| Sbjct: 9494 ttgattgaatgggacgtac 9512
>dbj|AP000495.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:301 to 308, anti-oncogene region, section 3/5 Length = 100000 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 tttatttttatttaaagaa 148 ||||||||||||||||||| Sbjct: 3537 tttatttttatttaaagaa 3555
>dbj|AB067475.1| Homo sapiens mRNA for KIAA1888 protein, partial cds Length = 3112 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 ttttatttaaagaaaagca 153 ||||||||||||||||||| Sbjct: 2391 ttttatttaaagaaaagca 2373 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,503,866 Number of Sequences: 3902068 Number of extensions: 2503866 Number of successful extensions: 367996 Number of sequences better than 10.0: 119 Number of HSP's better than 10.0 without gapping: 121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 367030 Number of HSP's gapped (non-prelim): 966 length of query: 153 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 132 effective length of database: 17,151,101,840 effective search space: 2263945442880 effective search space used: 2263945442880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
