>COBL4_ARATH (Q9LFW3) COBRA-like protein 4 precursor|
          Length = 431

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 182 HIVCPLRVLWFTARVWTHILLRKL*RTDLVHRSSHTRWGLERDYRNL 42
           H +CP+RV W     +      K+  T+  +R +HT W L   + NL
Sbjct: 273 HHMCPVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNL 319

>UBP8_SCHPO (Q09738) Probable ubiquitin carboxyl-terminal hydrolase 8 (EC|
           3.1.2.15) (Ubiquitin thioesterase 8) (Ubiquitin-specific
           processing protease 8) (Deubiquitinating enzyme 8)
          Length = 449

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 5   PTSLHCTVADIRLSSYNPSPDPTLYGSFYALDLSFTVFSIKCG 133
           PT + C + D+  S YN     T YG    L+L + +    CG
Sbjct: 186 PTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCG 228

>COBRA_ARATH (Q94KT8) COBRA protein precursor (Cell expansion protein)|
          Length = 456

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 176 VCPLRVLWFTARVWTHILLRKL*RTDLVHRSSHTRWGLERDYRNL 42
           +CP+RV W   + +      K+  T+  +R ++T+W L   + NL
Sbjct: 297 MCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWNLVAQHPNL 341

>YFEO_SHIFL (P59585) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 108 LQFSQ*NVGPDPSCEP 155
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89

>YFEO_ECOLI (P67729) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 108 LQFSQ*NVGPDPSCEP 155
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89

>YFEO_ECOL6 (Q8FFD3) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 108 LQFSQ*NVGPDPSCEP 155
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89

>YFEO_ECO57 (P67730) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 108 LQFSQ*NVGPDPSCEP 155
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89

>YR849_MIMIV (Q5UP10) Hypothetical protein R849|
          Length = 141

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +1

Query: 115 FLNKMWVQTRAVNHNTRRGQTMCCHLPLDANQITGLTTQTCCKNYFHASSKITMFYSRAC 294
           +LNK ++    +NH T + +T+      + N   G      CKN F  S      Y    
Sbjct: 6   YLNKQYIPWGILNHKTLKNETVVLEKYNEINSSIGPVFH--CKNLFVDSCDKDFVYFFVN 63

Query: 295 SKFF 306
            KFF
Sbjct: 64  KKFF 67

>YR681_MIMIV (Q5UNT5) Hypothetical protein R681|
          Length = 151

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
 Frame = +1

Query: 190 LPLDANQITGLTT----QTCCKNYFHASS 264
           LPLD+N++  LTT    QT  K YF+ S+
Sbjct: 4   LPLDSNELQELTTESINQTIIKKYFNESA 32

>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 801

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 41  LSSYNPSPDPTLYGSFYALDLSFTVFSIKC 130
           LS+YN   DPT+Y  +Y+    F   S+ C
Sbjct: 203 LSAYNQQGDPTMYEEYYSGLKHFIECSLDC 232

>TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 800

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 41  LSSYNPSPDPTLYGSFYALDLSFTVFSIKC 130
           LS+YN   DPT+Y  +Y+    F   S+ C
Sbjct: 202 LSAYNQQGDPTMYEEYYSGLKHFIECSLDC 231

>ADA2B_HORSE (O77721) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Fragment)
          Length = 389

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 85  LLCTRSVLYSF---LNKMWVQTRAVNHNTRR 168
           L CT S+++     L++ W  TRA+ +NT+R
Sbjct: 81  LFCTSSIVHLCAISLDRYWAVTRALEYNTKR 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,024,800
Number of Sequences: 219361
Number of extensions: 1031140
Number of successful extensions: 1860
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)