ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y772_METJA (Q58182) Hypothetical protein MJ0772 28 6.1
2S13A1_RAT (Q07782) Solute carrier family 13 member 1 (Renal sodi... 28 7.9

>Y772_METJA (Q58182) Hypothetical protein MJ0772|
          Length = 353

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 19  YDVEDLQQWHYNKSRAGETASLKK 90
           +DV D+++WHY KS       L+K
Sbjct: 137 FDVHDIRKWHYRKSFINFVKELRK 160



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>S13A1_RAT (Q07782) Solute carrier family 13 member 1 (Renal sodium/sulfate|
           cotransporter) (Na(+)/sulfate cotransporter) (NaSi-1)
          Length = 595

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 100 TNPVFSSLLFPLLCSYCNAIVASPLHHTAP 11
           +NP   ++LFP+L     AI  +PLH   P
Sbjct: 489 SNPATITILFPILSPLAEAIHVNPLHILLP 518


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,388,547
Number of Sequences: 219361
Number of extensions: 555418
Number of successful extensions: 1305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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