ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALR2_ECOLI (P29012) Alanine racemase, catabolic (EC 5.1.1.1) 30 1.4
2ALR2_ECO57 (Q8X4I9) Alanine racemase, catabolic (EC 5.1.1.1) 30 1.4
3ALR2_SALTY (P06191) Alanine racemase, catabolic (EC 5.1.1.1) 29 3.0
4ALR2_SALTI (Q8Z688) Alanine racemase, catabolic (EC 5.1.1.1) 29 3.0
5SYA_LACPL (Q88V10) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 28 6.7

>ALR2_ECOLI (P29012) Alanine racemase, catabolic (EC 5.1.1.1)|
          Length = 356

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 169 AKQAIICRISLTNLSKTLWHPHA 101
           A + + CR SL+N + TLWHP A
Sbjct: 179 AAEGLECRRSLSNSAATLWHPEA 201



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>ALR2_ECO57 (Q8X4I9) Alanine racemase, catabolic (EC 5.1.1.1)|
          Length = 356

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 169 AKQAIICRISLTNLSKTLWHPHA 101
           A + + CR SL+N + TLWHP A
Sbjct: 179 AAEGLECRRSLSNSAATLWHPEA 201



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>ALR2_SALTY (P06191) Alanine racemase, catabolic (EC 5.1.1.1)|
          Length = 356

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 172 VAKQAIICRISLTNLSKTLWHPHA 101
           +A + + C  SL+N + TLWHP A
Sbjct: 178 LATEGLQCAYSLSNSAATLWHPQA 201



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>ALR2_SALTI (Q8Z688) Alanine racemase, catabolic (EC 5.1.1.1)|
          Length = 356

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 172 VAKQAIICRISLTNLSKTLWHPHA 101
           +A + + C  SL+N + TLWHP A
Sbjct: 178 LATEGLQCAYSLSNSAATLWHPQA 201



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>SYA_LACPL (Q88V10) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 880

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 28  RYIKIIVAIPIGQYSNEANGTTKLRHGGAIGFWRGLS 138
           +Y KI+  + IG YS E +G T +++   +G ++ +S
Sbjct: 652 KYGKIVRVVSIGDYSIEFDGGTHVKNSSELGLFKIVS 688


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,680,753
Number of Sequences: 219361
Number of extensions: 520398
Number of successful extensions: 2100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2100
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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