ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RK4_ODOSI (P49546) Chloroplast 50S ribosomal protein L4 30 2.7
2CS120_WHEAT (P46525) Cold-shock protein CS120 29 5.9
3ENGC_PSEPK (Q88DC4) Probable GTPase engC (EC 3.6.1.-) 28 7.7

>RK4_ODOSI (P49546) Chloroplast 50S ribosomal protein L4|
          Length = 215

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 174 NSADTTSPTATTGLRSIAHSIQKSGSYL-HKVKNGHQDHQESGQISLTTATQ 326
           NS D    T +   +   + ++KSG+YL HK    HQ  Q  G IS  T ++
Sbjct: 10  NSVDINGKTLSDEYKLELNVLEKSGNYLIHKDILRHQSSQRQGTISTKTRSE 61



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>CS120_WHEAT (P46525) Cold-shock protein CS120|
          Length = 391

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 198 TATTGLRSIAHSIQKSG---SYLHKVKNGHQDHQESG 299
           T  TGL   AH+ +K G   +   K+  GHQDHQ++G
Sbjct: 61  TTGTGLHG-AHAGEKKGVMENIKDKLPGGHQDHQQTG 96



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>ENGC_PSEPK (Q88DC4) Probable GTPase engC (EC 3.6.1.-)|
          Length = 343

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 15/68 (22%)
 Frame = -2

Query: 366 ADLVN*ESLG*PH--------IGSPWLEKSVHFPDG-------LDAHFSLYGGMNQTSGW 232
           ADL+N E+    H        +G P LE S H  DG       LD H S++ G +   G 
Sbjct: 165 ADLINDENGPGLHALLEVYRELGYPLLEVSAHHGDGMQRLQQQLDGHISVFVGQSGV-GK 223

Query: 231 SELLNAVL 208
           S L+N++L
Sbjct: 224 SSLVNSLL 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,684,700
Number of Sequences: 219361
Number of extensions: 1216668
Number of successful extensions: 2691
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2691
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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