ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY770627.1| Hordeum vulgare subsp. vulgare outward-rectifying... 755 0.0
2gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 662 0.0
3ref|XM_469784.1| Oryza sativa (japonica cultivar-group), mRNA 143 5e-31
4dbj|AK069303.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
5gb|AF377947.3| Oryza sativa (japonica cultivar-group) chromosome... 117 3e-23
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 117 3e-23
7gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genom... 117 3e-23
8gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 genomic ... 117 3e-23
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
10gb|AC122165.37| Medicago truncatula clone mth2-32m22, complete s... 48 0.021
11ref|XM_476391.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.33
12gb|AC122827.3| Mus musculus BAC clone RP23-211N23 from chromosom... 44 0.33
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
14dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
15emb|AJ308597.1|STU308597 Solanum tuberosum kco1b gene for K+ cha... 44 0.33
16emb|AJ224926.1|STA224926 Solanum tuberosum mRNA for K+ channel p... 44 0.33
17dbj|AK109604.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
18dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
19gb|AY588389.1| Humulus lupulus clone HlACA3 microsatellite sequence 40 5.1
20gb|AC102483.8| Mus musculus chromosome 1, clone RP24-450F12, com... 40 5.1
21ref|XM_978376.1| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
22ref|XM_978344.1| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
23ref|XM_978302.1| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
24ref|XM_978403.1| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
25ref|XM_896381.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
26ref|XM_896366.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
27ref|XM_896354.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
28ref|XM_130829.6| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
29ref|XM_920850.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
30ref|XM_979681.1| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
31ref|XM_920859.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
32ref|XM_908408.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 g... 40 5.1
33gb|AC010125.4| Homo sapiens PAC clone RP5-1075C10 from 7, comple... 40 5.1
34gb|AC145819.1| Pan troglodytes BAC clone RP43-99J22 from 7, comp... 40 5.1
35emb|CR624151.1| full-length cDNA clone CS0DF009YJ16 of Fetal bra... 40 5.1
36gb|AC016822.9| Homo sapiens chromosome 10 clone RP11-430K23, com... 40 5.1
37dbj|AK032017.1| Mus musculus adult male medulla oblongata cDNA, ... 40 5.1
38dbj|AK018073.1| Mus musculus 14 days embryo thymus cDNA, RIKEN f... 40 5.1
39gb|AC011238.8| Homo sapiens BAC clone RP11-374C5 from 2, complet... 40 5.1
40emb|AL691427.15| Mouse DNA sequence from clone RP23-317I15 on ch... 40 5.1
41emb|AL805920.7| Mouse DNA sequence from clone RP23-162M7 on chro... 40 5.1 
>gb|AY770627.1| Hordeum vulgare subsp. vulgare outward-rectifying potassium channel
            (KCO1) mRNA, complete cds
          Length = 1385

 Score =  755 bits (381), Expect = 0.0
 Identities = 381/381 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atcaaagcatcaccaaatacctctttcttacacatgtccgggtgcatatgagcagatcca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 atcaaagcatcaccaaatacctctttcttacacatgtccgggtgcatatgagcagatcca 1260

                                                                        
Query: 61   ttgtgttaaatacatgtaggagctcaacaaggtcgtatcttttgacactttacaagatta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 ttgtgttaaatacatgtaggagctcaacaaggtcgtatcttttgacactttacaagatta 1200

                                                                        
Query: 121  cagaactaattaacagcattaaccgaccattcaactatagtatttaagctgtagaattaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 cagaactaattaacagcattaaccgaccattcaactatagtatttaagctgtagaattaa 1140

                                                                        
Query: 181  gtacaagcccatatgttcatcactgaccggattgtgcctgagtaaggtcataggtggaga 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 gtacaagcccatatgttcatcactgaccggattgtgcctgagtaaggtcataggtggaga 1080

                                                                        
Query: 241  gtgtgccggactggtcaacatcgagtttctcaaactcctctaggaaacaagatatgtctt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 gtgtgccggactggtcaacatcgagtttctcaaactcctctaggaaacaagatatgtctt 1020

                                                                        
Query: 301  cttggctgatcttccccagttctttgagcttgtacacgacaaattcagcagcacccactt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 cttggctgatcttccccagttctttgagcttgtacacgacaaattcagcagcacccactt 960

                                 
Query: 361  ttcgatcattatccagatcag 381
            |||||||||||||||||||||
Sbjct: 959  ttcgatcattatccagatcag 939
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>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete
             sequence
          Length = 101158

 Score =  662 bits (334), Expect = 0.0
 Identities = 349/354 (98%)
 Strand = Plus / Plus

                                                                         
Query: 1     atcaaagcatcaccaaatacctctttcttacacatgtccgggtgcatatgagcagatcca 60
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 92392 atcaaagcatcaccaaatacctctttcttacacatgtccaggtgcatatgagcagatcca 92451

                                                                         
Query: 61    ttgtgttaaatacatgtaggagctcaacaaggtcgtatcttttgacactttacaagatta 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92452 ttgtgttaaatacatgtaggagctcaacaaggtcgtatcttttgacactttacaagatta 92511

                                                                         
Query: 121   cagaactaattaacagcattaaccgaccattcaactatagtatttaagctgtagaattaa 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92512 cagaactaattaacagcattaaccgaccattcaactatagtatttaagctgtagaattaa 92571

                                                                         
Query: 181   gtacaagcccatatgttcatcactgaccggattgtgcctgagtaaggtcataggtggaga 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92572 gtacaagcccatatgttcatcactgaccggattgtgcctgagtaaggtcataggtggaga 92631

                                                                         
Query: 241   gtgtgccggactggtcaacatcgagtttctcaaactcctctaggaaacaagatatgtctt 300
             | ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 92632 gcgtgccggactggtcaacgtcgagtttctcaaactcctctagaaaagaagatatgtctt 92691

                                                                   
Query: 301   cttggctgatcttccccagttctttgagcttgtacacgacaaattcagcagcac 354
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92692 cttggctgatcttccccagttctttgagcttgtacacgacaaattcagcagcac 92745



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 354   cccacttttcgatcattatccagatcag 381
             ||||||||||||||||||||||||||||
Sbjct: 92849 cccacttttcgatcattatccagatcag 92876
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>ref|XM_469784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1289

 Score =  143 bits (72), Expect = 5e-31
 Identities = 153/180 (85%)
 Strand = Plus / Minus

                                                                        
Query: 200  tcactgaccggattgtgcctgagtaaggtcataggtggagagtgtgccggactggtcaac 259
            ||||||| | ||||||||  | || |||||||| | |||||| ||||| || ||||| ||
Sbjct: 1044 tcactgagcagattgtgctagggtcaggtcatatggggagagagtgccagagtggtcgac 985

                                                                        
Query: 260  atcgagtttctcaaactcctctaggaaacaagatatgtcttcttggctgatcttccccag 319
            |||||| || ||||||||||| || ||| |||| || || |||||| ||||||| |||||
Sbjct: 984  atcgagcttttcaaactcctccagaaaagaagaaatctcctcttggttgatcttacccag 925

                                                                        
Query: 320  ttctttgagcttgtacacgacaaattcagcagcacccacttttcgatcattatccagatc 379
            |||||||||||||||||| |||||||| |||||||| |||| |||||||| |||||||||
Sbjct: 924  ttctttgagcttgtacacaacaaattctgcagcaccaacttgtcgatcatcatccagatc 865
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>dbj|AK069303.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012L24, full
            insert sequence
          Length = 1674

 Score =  143 bits (72), Expect = 5e-31
 Identities = 153/180 (85%)
 Strand = Plus / Minus

                                                                        
Query: 200  tcactgaccggattgtgcctgagtaaggtcataggtggagagtgtgccggactggtcaac 259
            ||||||| | ||||||||  | || |||||||| | |||||| ||||| || ||||| ||
Sbjct: 1429 tcactgagcagattgtgctagggtcaggtcatatggggagagagtgccagagtggtcgac 1370

                                                                        
Query: 260  atcgagtttctcaaactcctctaggaaacaagatatgtcttcttggctgatcttccccag 319
            |||||| || ||||||||||| || ||| |||| || || |||||| ||||||| |||||
Sbjct: 1369 atcgagcttttcaaactcctccagaaaagaagaaatctcctcttggttgatcttacccag 1310

                                                                        
Query: 320  ttctttgagcttgtacacgacaaattcagcagcacccacttttcgatcattatccagatc 379
            |||||||||||||||||| |||||||| |||||||| |||| |||||||| |||||||||
Sbjct: 1309 ttctttgagcttgtacacaacaaattctgcagcaccaacttgtcgatcatcatccagatc 1250
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>gb|AF377947.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone
             OSJNBa0032E21, complete sequence
          Length = 137580

 Score =  117 bits (59), Expect = 3e-23
 Identities = 131/155 (84%)
 Strand = Plus / Minus

                                                                         
Query: 200   tcactgaccggattgtgcctgagtaaggtcataggtggagagtgtgccggactggtcaac 259
             ||||||| | ||||||||  | || |||||||| | |||||| ||||| || ||||| ||
Sbjct: 81170 tcactgagcagattgtgctagggtcaggtcatatggggagagagtgccagagtggtcgac 81111

                                                                         
Query: 260   atcgagtttctcaaactcctctaggaaacaagatatgtcttcttggctgatcttccccag 319
             |||||| || ||||||||||| || ||| |||| || || |||||| ||||||| |||||
Sbjct: 81110 atcgagcttttcaaactcctccagaaaagaagaaatctcctcttggttgatcttacccag 81051

                                                
Query: 320   ttctttgagcttgtacacgacaaattcagcagcac 354
             |||||||||||||||||| |||||||| |||||||
Sbjct: 81050 ttctttgagcttgtacacaacaaattctgcagcac 81016
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  117 bits (59), Expect = 3e-23
 Identities = 131/155 (84%)
 Strand = Plus / Plus

                                                                            
Query: 200      tcactgaccggattgtgcctgagtaaggtcataggtggagagtgtgccggactggtcaac 259
                ||||||| | ||||||||  | || |||||||| | |||||| ||||| || ||||| ||
Sbjct: 30722613 tcactgagcagattgtgctagggtcaggtcatatggggagagagtgccagagtggtcgac 30722672

                                                                            
Query: 260      atcgagtttctcaaactcctctaggaaacaagatatgtcttcttggctgatcttccccag 319
                |||||| || ||||||||||| || ||| |||| || || |||||| ||||||| |||||
Sbjct: 30722673 atcgagcttttcaaactcctccagaaaagaagaaatctcctcttggttgatcttacccag 30722732

                                                   
Query: 320      ttctttgagcttgtacacgacaaattcagcagcac 354
                |||||||||||||||||| |||||||| |||||||
Sbjct: 30722733 ttctttgagcttgtacacaacaaattctgcagcac 30722767
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>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete
             sequence
          Length = 157970

 Score =  117 bits (59), Expect = 3e-23
 Identities = 131/155 (84%)
 Strand = Plus / Minus

                                                                         
Query: 200   tcactgaccggattgtgcctgagtaaggtcataggtggagagtgtgccggactggtcaac 259
             ||||||| | ||||||||  | || |||||||| | |||||| ||||| || ||||| ||
Sbjct: 39777 tcactgagcagattgtgctagggtcaggtcatatggggagagagtgccagagtggtcgac 39718

                                                                         
Query: 260   atcgagtttctcaaactcctctaggaaacaagatatgtcttcttggctgatcttccccag 319
             |||||| || ||||||||||| || ||| |||| || || |||||| ||||||| |||||
Sbjct: 39717 atcgagcttttcaaactcctccagaaaagaagaaatctcctcttggttgatcttacccag 39658

                                                
Query: 320   ttctttgagcttgtacacgacaaattcagcagcac 354
             |||||||||||||||||| |||||||| |||||||
Sbjct: 39657 ttctttgagcttgtacacaacaaattctgcagcac 39623
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>gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 genomic sequence, complete
             sequence
          Length = 128294

 Score =  117 bits (59), Expect = 3e-23
 Identities = 131/155 (84%)
 Strand = Plus / Plus

                                                                         
Query: 200   tcactgaccggattgtgcctgagtaaggtcataggtggagagtgtgccggactggtcaac 259
             ||||||| | ||||||||  | || |||||||| | |||||| ||||| || ||||| ||
Sbjct: 31314 tcactgagcagattgtgctagggtcaggtcatatggggagagagtgccagagtggtcgac 31373

                                                                         
Query: 260   atcgagtttctcaaactcctctaggaaacaagatatgtcttcttggctgatcttccccag 319
             |||||| || ||||||||||| || ||| |||| || || |||||| ||||||| |||||
Sbjct: 31374 atcgagcttttcaaactcctccagaaaagaagaaatctcctcttggttgatcttacccag 31433

                                                
Query: 320   ttctttgagcttgtacacgacaaattcagcagcac 354
             |||||||||||||||||| |||||||| |||||||
Sbjct: 31434 ttctttgagcttgtacacaacaaattctgcagcac 31468
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  117 bits (59), Expect = 3e-23
 Identities = 131/155 (84%)
 Strand = Plus / Plus

                                                                            
Query: 200      tcactgaccggattgtgcctgagtaaggtcataggtggagagtgtgccggactggtcaac 259
                ||||||| | ||||||||  | || |||||||| | |||||| ||||| || ||||| ||
Sbjct: 30814037 tcactgagcagattgtgctagggtcaggtcatatggggagagagtgccagagtggtcgac 30814096

                                                                            
Query: 260      atcgagtttctcaaactcctctaggaaacaagatatgtcttcttggctgatcttccccag 319
                |||||| || ||||||||||| || ||| |||| || || |||||| ||||||| |||||
Sbjct: 30814097 atcgagcttttcaaactcctccagaaaagaagaaatctcctcttggttgatcttacccag 30814156

                                                   
Query: 320      ttctttgagcttgtacacgacaaattcagcagcac 354
                |||||||||||||||||| |||||||| |||||||
Sbjct: 30814157 ttctttgagcttgtacacaacaaattctgcagcac 30814191
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>gb|AC122165.37| Medicago truncatula clone mth2-32m22, complete sequence
          Length = 148586

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 297   tcttcttggctgatcttccccagttctttgagcttgtacacgacaaattcagcagc 352
             |||||||| || ||||||||||  ||||||||||| || |  ||||||||||||||
Sbjct: 57171 tcttcttgactaatcttccccatctctttgagcttataaataacaaattcagcagc 57116
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>ref|XM_476391.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1468

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 291  gatatgtcttcttggctgatcttccccagttctttgagcttgtaca 336
            |||||||| || ||||||||||| || || || |||||||||||||
Sbjct: 1068 gatatgtcctcctggctgatcttgccgagctccttgagcttgtaca 1023
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>gb|AC122827.3| Mus musculus BAC clone RP23-211N23 from chromosome 18, complete
             sequence
          Length = 194843

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 17    atacctctttcttacacatgtc 38
             ||||||||||||||||||||||
Sbjct: 33100 atacctctttcttacacatgtc 33121
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 291    gatatgtcttcttggctgatcttccccagttctttgagcttgtaca 336
              |||||||| || ||||||||||| || || || |||||||||||||
Sbjct: 467353 gatatgtcctcctggctgatcttgccgagctccttgagcttgtaca 467308
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 291   gatatgtcttcttggctgatcttccccagttctttgagcttgtaca 336
             |||||||| || ||||||||||| || || || |||||||||||||
Sbjct: 69517 gatatgtcctcctggctgatcttgccgagctccttgagcttgtaca 69472
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>emb|AJ308597.1|STU308597 Solanum tuberosum kco1b gene for K+ channel protein
          Length = 1666

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 291  gatatgtcttcttggctgatcttccccagttctttgagcttgtacacgacaaattcagca 350
            |||| ||| |||||||||||||| ||||  || || || || ||||| ||||||||||||
Sbjct: 1567 gatacgtcgtcttggctgatctttcccatctccttaagtttatacaccacaaattcagca 1508

              
Query: 351  gc 352
            ||
Sbjct: 1507 gc 1506
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>emb|AJ224926.1|STA224926 Solanum tuberosum mRNA for K+ channel protein (kco1b gene)
          Length = 1659

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 291  gatatgtcttcttggctgatcttccccagttctttgagcttgtacacgacaaattcagca 350
            |||| ||| |||||||||||||| ||||  || || || || ||||| ||||||||||||
Sbjct: 1093 gatacgtcgtcttggctgatctttcccatctccttaagtttatacaccacaaattcagca 1034

              
Query: 351  gc 352
            ||
Sbjct: 1033 gc 1032
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>dbj|AK109604.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F01, full
            insert sequence
          Length = 1468

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 291  gatatgtcttcttggctgatcttccccagttctttgagcttgtaca 336
            |||||||| || ||||||||||| || || || |||||||||||||
Sbjct: 1068 gatatgtcctcctggctgatcttgccgagctccttgagcttgtaca 1023
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>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1567_G09
          Length = 121388

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 291   gatatgtcttcttggctgatcttccccagttctttgagcttgtaca 336
             |||||||| || ||||||||||| || || || |||||||||||||
Sbjct: 21265 gatatgtcctcctggctgatcttgccgagctccttgagcttgtaca 21220
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>gb|AY588389.1| Humulus lupulus clone HlACA3 microsatellite sequence
          Length = 861

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 cgaccattcaactatagtat 163
           ||||||||||||||||||||
Sbjct: 129 cgaccattcaactatagtat 110
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>gb|AC102483.8| Mus musculus chromosome 1, clone RP24-450F12, complete sequence
          Length = 167656

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     aaatacatgtaggagctcaa 87
              ||||||||||||||||||||
Sbjct: 100171 aaatacatgtaggagctcaa 100190
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>ref|XM_978376.1| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 3 (6130401L20Rik), mRNA
          Length = 1496

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1174 gctgatcttccccagttctt 1155
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>ref|XM_978344.1| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 2 (6130401L20Rik), mRNA
          Length = 1778

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1456 gctgatcttccccagttctt 1437
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>ref|XM_978302.1| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 1 (6130401L20Rik), mRNA
          Length = 2722

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1822 gctgatcttccccagttctt 1803
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>ref|XM_978403.1| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 4 (6130401L20Rik), mRNA
          Length = 2531

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1594 gctgatcttccccagttctt 1575
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>ref|XM_896381.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 4 (6130401L20Rik), mRNA
          Length = 1496

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1174 gctgatcttccccagttctt 1155
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>ref|XM_896366.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 3 (6130401L20Rik), mRNA
          Length = 1778

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1456 gctgatcttccccagttctt 1437
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>ref|XM_896354.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 2 (6130401L20Rik), mRNA
          Length = 2722

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1822 gctgatcttccccagttctt 1803
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>ref|XM_130829.6| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 1 (6130401L20Rik), mRNA
          Length = 2531

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1594 gctgatcttccccagttctt 1575
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>ref|XM_920850.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 6 (6130401L20Rik), mRNA
          Length = 1496

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1174 gctgatcttccccagttctt 1155
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>ref|XM_979681.1| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 8 (6130401L20Rik), mRNA
          Length = 1778

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1456 gctgatcttccccagttctt 1437
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>ref|XM_920859.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 7 (6130401L20Rik), mRNA
          Length = 2722

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1822 gctgatcttccccagttctt 1803
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>ref|XM_908408.2| PREDICTED: Mus musculus RIKEN cDNA 6130401L20 gene, transcript
            variant 5 (6130401L20Rik), mRNA
          Length = 2531

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1594 gctgatcttccccagttctt 1575
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>gb|AC010125.4| Homo sapiens PAC clone RP5-1075C10 from 7, complete sequence
          Length = 171457

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    acactttacaagattacaga 124
              ||||||||||||||||||||
Sbjct: 117337 acactttacaagattacaga 117356
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>gb|AC145819.1| Pan troglodytes BAC clone RP43-99J22 from 7, complete sequence
          Length = 159950

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    acactttacaagattacaga 124
              ||||||||||||||||||||
Sbjct: 131636 acactttacaagattacaga 131617
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>emb|CR624151.1| full-length cDNA clone CS0DF009YJ16 of Fetal brain of Homo sapiens
            (human)
          Length = 2256

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 354  cccacttttcgatcattatccagatcag 381
            ||||||||| | ||||||||||||||||
Sbjct: 1453 cccactttttgttcattatccagatcag 1480
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>gb|AC016822.9| Homo sapiens chromosome 10 clone RP11-430K23, complete sequence
          Length = 172367

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   ttcagcagcacccacttttc 363
             ||||||||||||||||||||
Sbjct: 13870 ttcagcagcacccacttttc 13889
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>dbj|AK032017.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330546P07 product:hypothetical
            Calcium-binding EGF-like domain containing protein, full
            insert sequence
          Length = 2529

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1594 gctgatcttccccagttctt 1575
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>dbj|AK018073.1| Mus musculus 14 days embryo thymus cDNA, RIKEN full-length enriched
            library, clone:6130401L20 product:Hypothetical
            calcium-binding EGF-like domain containing protein
            homolog [Mus musculus], full insert sequence
          Length = 2725

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gctgatcttccccagttctt 324
            ||||||||||||||||||||
Sbjct: 1825 gctgatcttccccagttctt 1806
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>gb|AC011238.8| Homo sapiens BAC clone RP11-374C5 from 2, complete sequence
          Length = 155764

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 354   cccacttttcgatcattatccagatcag 381
             ||||||||| | ||||||||||||||||
Sbjct: 12828 cccactttttgttcattatccagatcag 12855
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>emb|AL691427.15| Mouse DNA sequence from clone RP23-317I15 on chromosome 3, complete
              sequence
          Length = 213090

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 305    gctgatcttccccagttctt 324
              ||||||||||||||||||||
Sbjct: 100727 gctgatcttccccagttctt 100746
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>emb|AL805920.7| Mouse DNA sequence from clone RP23-162M7 on chromosome X, complete
              sequence
          Length = 125192

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 65     gttaaatacatgtaggagctcaac 88
              |||||| |||||||||||||||||
Sbjct: 113364 gttaaaaacatgtaggagctcaac 113341


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,381,492
Number of Sequences: 3902068
Number of extensions: 3381492
Number of successful extensions: 56519
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56391
Number of HSP's gapped (non-prelim): 128
length of query: 381
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 359
effective length of database: 17,147,199,772
effective search space: 6155844718148
effective search space used: 6155844718148
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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