ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, ... 539 e-150
2gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (U... 349 5e-93
3gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence 172 6e-40
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
6dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
7dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
8dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
11emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 121 2e-24
12emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 121 2e-24
13emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 121 2e-24
14gb|BT019260.1| Zea mays clone Contig933.F mRNA sequence 60 6e-06
15gb|BT018436.1| Zea mays clone EL01N0372B11.d mRNA sequence 60 6e-06
16gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, ... 58 2e-05
17ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activati... 46 0.092
18gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 ma... 46 0.092
19gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, co... 46 0.092
20dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin... 46 0.092
21gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, co... 46 0.092
22gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating e... 46 0.092
23emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Co... 46 0.092
24emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Co... 46 0.092
25emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Co... 46 0.092
26gb|BC076655.1| Xenopus tropicalis matrin 3, mRNA (cDNA clone MGC... 44 0.36
27gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete se... 44 0.36
28ref|NM_001006791.1| Xenopus tropicalis matrin 3 (matr3), mRNA 44 0.36
29emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiqui... 44 0.36
30emb|CR761638.2| Xenopus tropicalis finished cDNA, clone TGas107n11 44 0.36
31gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, com... 40 5.7
32ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM016... 40 5.7
33ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM023... 40 5.7
34gb|AE014075.1| Escherichia coli CFT073, complete genome 40 5.7
35gb|CP000243.1| Escherichia coli UTI89, complete genome 40 5.7
36emb|AL591845.27| Human DNA sequence from clone RP11-268J15 on ch... 40 5.7
37dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 5.7
38gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Can... 40 5.7
39gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite s... 40 5.7
40emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragm... 40 5.7
41emb|AM236324.1| Escherichia coli genome fragment containing the ... 40 5.7 
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3695

 Score =  539 bits (272), Expect = e-150
 Identities = 388/425 (91%), Gaps = 10/425 (2%)
 Strand = Plus / Minus

                                                                        
Query: 7    ttttagttgtaaacgcatcatgcaaca--------gatgatgttgtgcgt-gtcttgtga 57
            |||||||||| ||||||||||||||||        ||||||||||||| | |||| ||||
Sbjct: 3687 ttttagttgtgaacgcatcatgcaacaattatcaagatgatgttgtgcctagtctcgtga 3628

                                                                        
Query: 58   atcgtgatgtctggtaacaactccagatcagcccccaatgatccaatcgacatcgagatg 117
            || || ||||||||||||||| | |||||||||||||||||||| ||||||||| |||||
Sbjct: 3627 atagttatgtctggtaacaacccgagatcagcccccaatgatccgatcgacatcaagatg 3568

                                                                        
Query: 118  gtagaaaggaaaa-tcagtcagtaatgtggcttaagcccccactcagcttacagtcacta 176
            ||||||||||||| ||||||  ||||||||||||||||||||||||||||||| ||||||
Sbjct: 3567 gtagaaaggaaaaatcagtcgataatgtggcttaagcccccactcagcttacaatcacta 3508

                                                                        
Query: 177  atgcaactcatgacttgtcagtcgatcaggcatgaccaaccacaagatcatgtgaacaca 236
            |||| ||||||||| ||||||||||||  |||||||||||||||||||||||| ||| ||
Sbjct: 3507 atgcgactcatgacatgtcagtcgatccagcatgaccaaccacaagatcatgtaaacgca 3448

                                                                        
Query: 237  gatgaagcgcttcttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtca 296
            || | |||||||||||||||||||||||| |||||||| |||||||||||||||||||| 
Sbjct: 3447 gaaggagcgcttcttcagcggaagtagaccgacacaagtgggatgtcgacatcgttgtcg 3388

                                                                        
Query: 297  tcgtcatcctcacaggccaccacgacgtcgagatgacgccggtaagagggcacctccatc 356
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3387 tcgtcatcctcacaggccaccacaacgtcgagatgacgccggtaagagggcacctccatc 3328

                                                                        
Query: 357  ttggccacctccctggcaacatcaactacctttctgtcaagccgttccttgtgcctgggg 416
            || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 3327 ttagccacctccctggcaacatcaacaaccttcctgtcaagccgttccttgtgcctgggg 3268

                 
Query: 417  aacat 421
            |||||
Sbjct: 3267 aacat 3263
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>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds
          Length = 3586

 Score =  349 bits (176), Expect = 5e-93
 Identities = 215/228 (94%)
 Strand = Plus / Minus

                                                                        
Query: 194  tcagtcgatcaggcatgaccaaccacaagatcatgtgaacacagatgaagcgcttcttca 253
            ||||| ||||| |||||||||||||||||||||| | ||| |||| | ||||||||||||
Sbjct: 3395 tcagtagatcaagcatgaccaaccacaagatcatttaaacgcagaaggagcgcttcttca 3336

                                                                        
Query: 254  gcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggc 313
            |||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 3335 gcggaagtagaccgacacaagtgggatgtcgacatcattgtcgtcgtcatcctcacacgc 3276

                                                                        
Query: 314  caccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctggc 373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3275 caccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctggc 3216

                                                            
Query: 374  aacatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
            ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3215 aacatcaactaccttcctgtcaagccgttccttgtgcctggggaacat 3168



 Score =  174 bits (88), Expect = 1e-40
 Identities = 150/169 (88%), Gaps = 10/169 (5%)
 Strand = Plus / Minus

                                                                        
Query: 4    caattttagttgtaaacgcatcatgcaaca--------gatgatgttgtgcgt-gtcttg 54
            ||||||||| ||||||||||||||||||||        ||||||||||||| | |||| |
Sbjct: 3571 caattttagctgtaaacgcatcatgcaacaattatcaagatgatgttgtgcctagtctcg 3512

                                                                        
Query: 55   tgaatcgtgatgtctggtaacaactccagatcagcccccaatgatccaatcgacatcga- 113
            |||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||| | 
Sbjct: 3511 tgaatcatgatgtctggtaacaacccgagatcagcccccaatgatccgatcgacatcaaa 3452

                                                             
Query: 114  gatggtagaaaggaaaatcagtcagtaatgtggcttaagcccccactca 162
            ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3451 gatggtagaaaggaaaatcagtcggtaatgtggcttaagcccccactca 3403
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>gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence
          Length = 836

 Score =  172 bits (87), Expect = 6e-40
 Identities = 147/167 (88%)
 Strand = Plus / Minus

                                                                       
Query: 255 cggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggcc 314
           |||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 779 cggaagtaaatagacacaagcgggatgtcgacgtcattgtcatcgtcatcctcacaggcc 720

                                                                       
Query: 315 accacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctggca 374
           ||||| ||||| ||||| || ||||| || |||||||||| |||||||||||||||||| 
Sbjct: 719 accacaacgtccagatggcggcggtaggaaggcacctccaccttggccacctccctggcc 660

                                                          
Query: 375 acatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
           ||||| || |||||  |||| ||||| |||||||| || ||||||||
Sbjct: 659 acatccaccaccttcttgtccagccgctccttgtgtctcgggaacat 613
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Plus

                                                                          
Query: 249    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 308
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209

                                                                          
Query: 309    caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 368
              || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| |||||||||
Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 312269

                                                                   
Query: 369    ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
              || || ||||| || |||||  |||| || || ||||||||||| ||||||||
Sbjct: 312270 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacat 312322



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 135    tcagtaatgtggcttaagcccccactcagcttacag 170
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Plus

                                                                          
Query: 249    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 308
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107

                                                                          
Query: 309    caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 368
              || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| |||||||||
Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 295167

                                                                   
Query: 369    ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
              || || ||||| || |||||  |||| || || ||||||||||| ||||||||
Sbjct: 295168 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacat 295220



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 135    tcagtaatgtggcttaagcccccactcagcttacag 170
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
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>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full
            insert sequence
          Length = 3724

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Minus

                                                                        
Query: 249  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 308
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 3469 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 3410

                                                                        
Query: 309  caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 368
            || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| |||||||||
Sbjct: 3409 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 3350

                                                                 
Query: 369  ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
            || || ||||| || |||||  |||| || || ||||||||||| ||||||||
Sbjct: 3349 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacat 3297



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 135  tcagtaatgtggcttaagcccccactcagcttacag 170
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 3580 tcagtaatgtggcttaaacccccacttagtttacag 3545
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>dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I12, full
            insert sequence
          Length = 1533

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Minus

                                                                        
Query: 249  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 308
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 1362 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1303

                                                                        
Query: 309  caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 368
            || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| |||||||||
Sbjct: 1302 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 1243

                                                                 
Query: 369  ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
            || || ||||| || |||||  |||| || || ||||||||||| ||||||||
Sbjct: 1242 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacat 1190



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 135  tcagtaatgtggcttaagcccccactcagcttacag 170
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 1473 tcagtaatgtggcttaaacccccacttagtttacag 1438
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>dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C03, full
            insert sequence
          Length = 1510

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Minus

                                                                        
Query: 249  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 308
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 1253 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1194

                                                                        
Query: 309  caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 368
            || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| |||||||||
Sbjct: 1193 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 1134

                                                                 
Query: 369  ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
            || || ||||| || |||||  |||| || || ||||||||||| ||||||||
Sbjct: 1133 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacat 1081



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 135  tcagtaatgtggcttaagcccccactcagcttacag 170
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 1364 tcagtaatgtggcttaaacccccacttagtttacag 1329
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Plus

                                                                          
Query: 249    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 308
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107

                                                                          
Query: 309    caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 368
              || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| |||||||||
Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 295167

                                                                   
Query: 369    ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
              || || ||||| || |||||  |||| || || ||||||||||| ||||||||
Sbjct: 295168 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacat 295220



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 135    tcagtaatgtggcttaagcccccactcagcttacag 170
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Plus

                                                                          
Query: 249    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 308
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209

                                                                          
Query: 309    caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 368
              || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| |||||||||
Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 312269

                                                                   
Query: 369    ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
              || || ||||| || |||||  |||| || || ||||||||||| ||||||||
Sbjct: 312270 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacat 312322



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 135    tcagtaatgtggcttaagcccccactcagcttacag 170
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 160673

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Minus

                                                                        
Query: 249  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 308
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 9945 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 9886

                                                                        
Query: 309  caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 368
            || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| |||||||||
Sbjct: 9885 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 9826

                                                                 
Query: 369  ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
            || || ||||| || |||||  |||| || || ||||||||||| ||||||||
Sbjct: 9825 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacat 9773



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 135   tcagtaatgtggcttaagcccccactcagcttacag 170
             ||||||||||||||||| |||||||| || ||||||
Sbjct: 10056 tcagtaatgtggcttaaacccccacttagtttacag 10021
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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Plus

                                                                         
Query: 249   cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 308
             ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 45201 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 45260

                                                                         
Query: 309   caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 368
             || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| |||||||||
Sbjct: 45261 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 45320

                                                                  
Query: 369   ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
             || || ||||| || |||||  |||| || || ||||||||||| ||||||||
Sbjct: 45321 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacat 45373



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 135   tcagtaatgtggcttaagcccccactcagcttacag 170
             ||||||||||||||||| |||||||| || ||||||
Sbjct: 45090 tcagtaatgtggcttaaacccccacttagtttacag 45125
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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 164143

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Plus

                                                                        
Query: 249  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 308
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 2366 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 2425

                                                                        
Query: 309  caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 368
            || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| |||||||||
Sbjct: 2426 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 2485

                                                                 
Query: 369  ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacat 421
            || || ||||| || |||||  |||| || || ||||||||||| ||||||||
Sbjct: 2486 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacat 2538



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 135  tcagtaatgtggcttaagcccccactcagcttacag 170
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 2255 tcagtaatgtggcttaaacccccacttagtttacag 2290
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>gb|BT019260.1| Zea mays clone Contig933.F mRNA sequence
          Length = 771

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 348 acctccatcttggccacctccctggcaacatcaactacctttctgtcaagccgttccttg 407
           ||||||| |||||||||||||||||| |||||||| ||||| || |  ||||  ||||||
Sbjct: 307 acctccaccttggccacctccctggcgacatcaaccaccttcctctgcagcctctccttg 366

                         
Query: 408 tgcctggggaacat 421
           ||||| | ||||||
Sbjct: 367 tgcctcgcgaacat 380
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>gb|BT018436.1| Zea mays clone EL01N0372B11.d mRNA sequence
          Length = 1726

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 348  acctccatcttggccacctccctggcaacatcaactacctttctgtcaagccgttccttg 407
            ||||||| |||||||||||||||||| |||||||| ||||| || |  ||||  ||||||
Sbjct: 1463 acctccaccttggccacctccctggcgacatcaaccaccttcctctgcagcctctccttg 1404

                          
Query: 408  tgcctggggaacat 421
            ||||| | ||||||
Sbjct: 1403 tgcctcgcgaacat 1390
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>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3588

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 98/121 (80%)
 Strand = Plus / Minus

                                                                        
Query: 253  agcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacagg 312
            |||||||||| || ||||| || ||||||||||| ||||| || || || ||||| ||||
Sbjct: 3345 agcggaagtaaaccgacacgagggggatgtcgacgtcgttctcgtcctcgtcctcgcagg 3286

                                                                        
Query: 313  ccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctgg 372
            ||||  ||| ||| || || | ||||||   ||| || |||| |||||||||||||||||
Sbjct: 3285 ccacgccgatgtccaggtgcctccggtactcggggacgtccaccttggccacctccctgg 3226

             
Query: 373  c 373
            |
Sbjct: 3225 c 3225
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>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110
            (ATUBA1) mRNA, complete cds
          Length = 3626

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 257  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 316
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3360 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3301

               
Query: 317  cac 319
            |||
Sbjct: 3300 cac 3298
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>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete
             sequence
          Length = 83796

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 257   gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 316
             |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 53002 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 52943

                
Query: 317   cac 319
             |||
Sbjct: 52942 cac 52940
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>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds
          Length = 3561

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 257  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 316
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3321 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3262

               
Query: 317  cac 319
            |||
Sbjct: 3261 cac 3259
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>dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin activating enzyme,
           complete cds, clone: RAFL22-01-B01
          Length = 474

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 257 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 316
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 208 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 149

              
Query: 317 cac 319
           |||
Sbjct: 148 cac 146
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>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds
          Length = 3243

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 257  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 316
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3237 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3178

               
Query: 317  cac 319
            |||
Sbjct: 3177 cac 3175
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>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene,
            complete cds
          Length = 3346

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 257  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 316
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3334 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3275

               
Query: 317  cac 319
            |||
Sbjct: 3274 cac 3272
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>emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL1ZD10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 646

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 257 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 316
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 390 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 331

              
Query: 317 cac 319
           |||
Sbjct: 330 cac 328
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>emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH43ZE11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1375

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 257  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 316
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 1167 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 1108

               
Query: 317  cac 319
            |||
Sbjct: 1107 cac 1105
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>emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH16ZF09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 930

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 257 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 316
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 673 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 614

              
Query: 317 cac 319
           |||
Sbjct: 613 cac 611
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>gb|BC076655.1| Xenopus tropicalis matrin 3, mRNA (cDNA clone MGC:79524
            IMAGE:6977687), complete cds
          Length = 3174

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 348  acctccatcttggccacctccc 369
            ||||||||||||||||||||||
Sbjct: 1307 acctccatcttggccacctccc 1286
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>gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete sequence
          Length = 164963

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 348   acctccatcttggccacctccc 369
             ||||||||||||||||||||||
Sbjct: 87684 acctccatcttggccacctccc 87705
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>ref|NM_001006791.1| Xenopus tropicalis matrin 3 (matr3), mRNA
          Length = 3174

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 348  acctccatcttggccacctccc 369
            ||||||||||||||||||||||
Sbjct: 1307 acctccatcttggccacctccc 1286
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>emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiquitin activating enzyme E1
           (ORF), clone CanUBC-1
          Length = 807

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 291 ttgtcatcgtcatcctcacaggccac 316
           ||||||||||||||||| ||||||||
Sbjct: 484 ttgtcatcgtcatcctcgcaggccac 459
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>emb|CR761638.2| Xenopus tropicalis finished cDNA, clone TGas107n11
          Length = 1855

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 348  acctccatcttggccacctccc 369
            ||||||||||||||||||||||
Sbjct: 1179 acctccatcttggccacctccc 1158
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>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence
          Length = 194380

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    acatcgttgtcatcgtcatc 304
              ||||||||||||||||||||
Sbjct: 158321 acatcgttgtcatcgtcatc 158340
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>ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM01632.1) partial mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 281 gtcgacatcgttgtcatcgtcatc 304
           |||| |||||||||||||||||||
Sbjct: 585 gtcgtcatcgttgtcatcgtcatc 562
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>ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM02379.1) partial mRNA
          Length = 3270

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  tcacaggccaccacgacgtc 325
            ||||||||||||||||||||
Sbjct: 2191 tcacaggccaccacgacgtc 2210
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 51      cttgtgaatcgtgatgtctg 70
               ||||||||||||||||||||
Sbjct: 2258336 cttgtgaatcgtgatgtctg 2258355
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 51      cttgtgaatcgtgatgtctg 70
               ||||||||||||||||||||
Sbjct: 2109514 cttgtgaatcgtgatgtctg 2109533
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>emb|AL591845.27| Human DNA sequence from clone RP11-268J15 on chromosome 1 Contains the
             3' end of a novel gene for thyroid hormone
             receptor-associated protein, 150 kDa subunit (TRAP150)
             (FLJ22082), a novel transcript (FLJ22938), a gene for a
             novel protein (FLJ10647), the 3' end of a gene for
             Ser/Thr-like kinase (MGC4796) and two CpG islands,
             complete sequence
          Length = 104307

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   ccacctccctggcaacatca 380
             ||||||||||||||||||||
Sbjct: 67335 ccacctccctggcaacatca 67354
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 239     tgaagcgcttcttcagcgga 258
               ||||||||||||||||||||
Sbjct: 1983686 tgaagcgcttcttcagcgga 1983705
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>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189286

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    gagatggtagaaaggaaaat 131
              ||||||||||||||||||||
Sbjct: 153914 gagatggtagaaaggaaaat 153933
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>gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite sequence
          Length = 254

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 281 gtcgacatcgttgtcatcgtcatcctca 308
           |||| |||||| ||||||||||||||||
Sbjct: 231 gtcgtcatcgtcgtcatcgtcatcctca 204
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>emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragment, clone 19b9, forward
           read cpg19b9.ft1a
          Length = 264

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 gaaaggaaaatcagtcagta 140
           ||||||||||||||||||||
Sbjct: 169 gaaaggaaaatcagtcagta 188
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>emb|AM236324.1| Escherichia coli genome fragment containing the yersiniabactin, cob and
             pdu gene clusters, strain A0 34/86
          Length = 84189

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    cttgtgaatcgtgatgtctg 70
             ||||||||||||||||||||
Sbjct: 54791 cttgtgaatcgtgatgtctg 54810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,107,632
Number of Sequences: 3902068
Number of extensions: 3107632
Number of successful extensions: 60470
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60294
Number of HSP's gapped (non-prelim): 171
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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