ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 60 5e-07
2gb|AC132342.3| Mus musculus BAC clone RP24-168N15 from chromosom... 36 6.6
3emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in l... 36 6.6
4emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genom... 36 6.6
5dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 36 6.6
6gb|AC096741.3| Homo sapiens BAC clone RP11-327O17 from 4, comple... 36 6.6
7gb|AC007638.8| Homo sapiens chromosome 17, clone RP11-515O17, co... 36 6.6
8gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 36 6.6
9emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in... 36 6.6
10gb|AC159297.3| Mus musculus BAC clone RP23-258F9 from chromosome... 36 6.6
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.6
12gb|AC084538.1|CBRG26J16 Caenorhabditis briggsae cosmid G26J16, c... 36 6.6
13gb|AC005177.1|AC005177 Homo sapiens chromosome 17, clone HCIT462... 36 6.6
14emb|AL606751.5| Zebrafish DNA sequence from clone BUSM1-173A8 in... 36 6.6
15gb|AC115959.17| Mus musculus chromosome 1, clone RP24-65D16, com... 36 6.6
16gb|AC117796.12| Mus musculus chromosome 1, clone RP24-554P6, com... 36 6.6
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 36 6.6
18emb|AL732639.5|CNS08C9E Oryza sativa chromosome 12, . BAC OSJNBa... 36 6.6

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score = 60.0 bits (30), Expect = 5e-07
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 13   ttcattatggggcaaaacaggggattttttctgcacac 50
            |||||||| |||||||||| ||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacac 2859



to top

>gb|AC132342.3| Mus musculus BAC clone RP24-168N15 from chromosome 12, complete
             sequence
          Length = 165700

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 25    caaaacaggggatttttt 42
             ||||||||||||||||||
Sbjct: 10914 caaaacaggggatttttt 10897



to top

>emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in linkage group 3, complete
              sequence
          Length = 168285

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 25     caaaacaggggatttttt 42
              ||||||||||||||||||
Sbjct: 101785 caaaacaggggatttttt 101802



to top

>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16
          Length = 348942

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 14     tcattatggggcaaaaca 31
              ||||||||||||||||||
Sbjct: 143392 tcattatggggcaaaaca 143375



to top

>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 18     tatggggcaaaacagggg 35
              ||||||||||||||||||
Sbjct: 308997 tatggggcaaaacagggg 308980



to top

>gb|AC096741.3| Homo sapiens BAC clone RP11-327O17 from 4, complete sequence
          Length = 177300

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 10     gacttcattatggggcaaaaca 31
              ||||| ||||||||||||||||
Sbjct: 129856 gacttaattatggggcaaaaca 129877



to top

>gb|AC007638.8| Homo sapiens chromosome 17, clone RP11-515O17, complete sequence
          Length = 182051

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 18     tatggggcaaaacaggggattt 39
              ||||||||||| ||||||||||
Sbjct: 175829 tatggggcaaagcaggggattt 175850



to top

>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 25      caaaacaggggattttttctgc 46
               |||||| |||||||||||||||
Sbjct: 2390675 caaaaccggggattttttctgc 2390696



to top

>emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in linkage group 1,
             complete sequence
          Length = 166353

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 28    aacaggggattttttctg 45
             ||||||||||||||||||
Sbjct: 78257 aacaggggattttttctg 78274



to top

>gb|AC159297.3| Mus musculus BAC clone RP23-258F9 from chromosome 12, complete sequence
          Length = 193434

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 25    caaaacaggggatttttt 42
             ||||||||||||||||||
Sbjct: 63402 caaaacaggggatttttt 63419



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 26       aaaacaggggattttttc 43
                ||||||||||||||||||
Sbjct: 17001460 aaaacaggggattttttc 17001443



to top

>gb|AC084538.1|CBRG26J16 Caenorhabditis briggsae cosmid G26J16, complete sequence
          Length = 23342

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 30   caggggattttttctgca 47
            ||||||||||||||||||
Sbjct: 3795 caggggattttttctgca 3778



to top

>gb|AC005177.1|AC005177 Homo sapiens chromosome 17, clone HCIT462L7, complete sequence
          Length = 142278

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 18     tatggggcaaaacaggggattt 39
              ||||||||||| ||||||||||
Sbjct: 127662 tatggggcaaagcaggggattt 127641



to top

>emb|AL606751.5| Zebrafish DNA sequence from clone BUSM1-173A8 in linkage group 1,
             complete sequence
          Length = 104334

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 15    cattatggggcaaaacagggga 36
             |||||||||||||| |||||||
Sbjct: 51699 cattatggggcaaagcagggga 51720



to top

>gb|AC115959.17| Mus musculus chromosome 1, clone RP24-65D16, complete sequence
          Length = 187431

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 23    ggcaaaacaggggatttt 40
             ||||||||||||||||||
Sbjct: 23241 ggcaaaacaggggatttt 23224



to top

>gb|AC117796.12| Mus musculus chromosome 1, clone RP24-554P6, complete sequence
          Length = 109851

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 23    ggcaaaacaggggatttt 40
             ||||||||||||||||||
Sbjct: 37642 ggcaaaacaggggatttt 37659



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 26       aaaacaggggattttttc 43
                ||||||||||||||||||
Sbjct: 16954693 aaaacaggggattttttc 16954676



to top

>emb|AL732639.5|CNS08C9E Oryza sativa chromosome 12, . BAC OSJNBa0038H18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 150238

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     aaaacaggggattttttc 43
              ||||||||||||||||||
Sbjct: 123503 aaaacaggggattttttc 123486


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 362,994
Number of Sequences: 3902068
Number of extensions: 362994
Number of successful extensions: 87747
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87637
Number of HSP's gapped (non-prelim): 110
length of query: 50
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 30
effective length of database: 17,155,003,908
effective search space: 514650117240
effective search space used: 514650117240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top