Clone Name | rbastl43e10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 95.6 bits (48), Expect = 9e-17 Identities = 84/96 (87%) Strand = Plus / Minus Query: 258 tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317 ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| Sbjct: 3343077 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 3343018 Query: 318 gcagcgtcaaacgagatgaactccacaccctgctcc 353 ||||| || || ||||||||||| ||||||||||| Sbjct: 3343017 gcagcatcgaatgagatgaactcagcaccctgctcc 3342982 Score = 73.8 bits (37), Expect = 3e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 257 ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316 |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| || Sbjct: 3351813 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 3351754 Query: 317 agcagcgtcaaacgagatgaactccacaccctgctcc 353 | || || || ||||||||||| ||||||||||| Sbjct: 3351753 gacggcatcgaaagagatgaactcagcaccctgctcc 3351717 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 aacttccatggacggggcta 235 |||||||||||||||||||| Sbjct: 18082524 aacttccatggacggggcta 18082505
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 95.6 bits (48), Expect = 9e-17 Identities = 84/96 (87%) Strand = Plus / Minus Query: 258 tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317 ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| Sbjct: 3343022 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 3342963 Query: 318 gcagcgtcaaacgagatgaactccacaccctgctcc 353 ||||| || || ||||||||||| ||||||||||| Sbjct: 3342962 gcagcatcgaatgagatgaactcagcaccctgctcc 3342927 Score = 73.8 bits (37), Expect = 3e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 257 ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316 |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| || Sbjct: 3351758 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 3351699 Query: 317 agcagcgtcaaacgagatgaactccacaccctgctcc 353 | || || || ||||||||||| ||||||||||| Sbjct: 3351698 gacggcatcgaaagagatgaactcagcaccctgctcc 3351662 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 aacttccatggacggggcta 235 |||||||||||||||||||| Sbjct: 18008845 aacttccatggacggggcta 18008826
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 95.6 bits (48), Expect = 9e-17 Identities = 84/96 (87%) Strand = Plus / Minus Query: 258 tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317 ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| Sbjct: 22130 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 22071 Query: 318 gcagcgtcaaacgagatgaactccacaccctgctcc 353 ||||| || || ||||||||||| ||||||||||| Sbjct: 22070 gcagcatcgaatgagatgaactcagcaccctgctcc 22035 Score = 73.8 bits (37), Expect = 3e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 257 ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316 |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| || Sbjct: 30866 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 30807 Query: 317 agcagcgtcaaacgagatgaactccacaccctgctcc 353 | || || || ||||||||||| ||||||||||| Sbjct: 30806 gacggcatcgaaagagatgaactcagcaccctgctcc 30770
>gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence Length = 625 Score = 71.9 bits (36), Expect = 1e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 273 ccataggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaa 328 ||||||| |||||||||||||||| ||||||||||||| ||||| ||||| ||||| Sbjct: 181 ccataggcgctgaagtgcttcaccctgaacttccactctcccttggcagcatcaaa 236
>gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence Length = 1900 Score = 65.9 bits (33), Expect = 8e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 273 ccataggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaacgag 332 ||||||| |||||| ||||||||| ||||||||||||| ||||| ||||| ||||| || Sbjct: 1733 ccataggcgctgaaatgcttcaccctgaacttccactctcccttggcagcatcaaaggac 1674 Query: 333 atgaactccacaccctgctcc 353 | |||||| | ||||||||| Sbjct: 1673 acaaactccgcgccctgctcc 1653
>gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds Length = 732 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 268 caaaaccataggagctgaagtgcttcaccttgaacttccactc 310 ||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 430 caaaatcatagcagctgaagtgcttcaccctgaacttccactc 388
>gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence Length = 1871 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 276 taggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtc 325 |||| |||||||||||||||| ||||||||||||| ||||| ||||||| Sbjct: 1565 taggcgctgaagtgcttcaccctgaacttccactctcccttgacagcgtc 1516
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete sequence Length = 109560 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 162 agcattattcaaaaaacaaaag 183 |||||||||||||||||||||| Sbjct: 45685 agcattattcaaaaaacaaaag 45664
>gb|DQ115799.1| Bacillus badius penicillin G acylase (pac) gene, complete cds; macronuclear Length = 2617 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 aaacaagaaagatttgtacaa 134 ||||||||||||||||||||| Sbjct: 311 aaacaagaaagatttgtacaa 331
>gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-15, complete sequence Length = 150242 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 agcattattcaaaaaacaaaa 182 ||||||||||||||||||||| Sbjct: 45337 agcattattcaaaaaacaaaa 45357
>gb|AC147329.2| Pan troglodytes BAC clone RP43-21F14 from 7, complete sequence Length = 189770 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cttcagcaaaaccataggag 281 |||||||||||||||||||| Sbjct: 109436 cttcagcaaaaccataggag 109455
>gb|AY813463.1| Schistosoma japonicum SJCHGC01579 protein mRNA, complete cds Length = 1930 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 aagatttgtacaaaacatagaaac 145 |||| ||||||||||||||||||| Sbjct: 595 aagaattgtacaaaacatagaaac 572
>gb|AC145901.2| Pan troglodytes BAC clone RP43-9F20 from 7, complete sequence Length = 176187 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 cttcagcaaaaccataggag 281 |||||||||||||||||||| Sbjct: 5023 cttcagcaaaaccataggag 5004
>gb|AY494082.1| Homo sapiens cell division cycle 25B (CDC25B) gene, complete cds Length = 13771 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 gagatgaactccacaccctgctcc 353 |||||||||||||||| ||||||| Sbjct: 8403 gagatgaactccacactctgctcc 8380
>gb|AY223400.1| Schistosoma japonicum clone ZZZ33 mRNA sequence Length = 1951 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 aagatttgtacaaaacatagaaac 145 |||| ||||||||||||||||||| Sbjct: 596 aagaattgtacaaaacatagaaac 573
>gb|AC079589.6| Homo sapiens BAC clone RP11-589K23 from 7, complete sequence Length = 19706 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 cttcagcaaaaccataggag 281 |||||||||||||||||||| Sbjct: 1363 cttcagcaaaaccataggag 1344
>emb|AL109804.41|HS1009E24 Human DNA sequence from clone RP5-1009E24 on chromosome 20 Contains the 5' end of the ADAM33 gene for a disintegrin and metalloproteinase domain 33 protein, the SN gene encoding sialoadhesin, the C20orf60 gene, the C20orf27 gene, the C20orf28 gene, the CENPB gene for centromere protein B, the CDC25B gene for cell division cycle protein 25B, the C20orf29 gene, the 5' end of the gene for a novel protein (KIAA1271) and nine CpG islands, complete sequence Length = 185820 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 gagatgaactccacaccctgctcc 353 |||||||||||||||| ||||||| Sbjct: 127277 gagatgaactccacactctgctcc 127254
>emb|AL606829.13| Mouse DNA sequence from clone RP23-10M12 on chromosome 11 Contains a novel gene (MOR280-1) similar to the olfactory receptor family, a novel gene (D330012D11Rik), the Zfp62 gene for zinc finger protein 62, the Mgat1 gene for mannoside acetylglucosaminyltransferase 1, a novel gene (MOR256-24) similar to the olfactory receptor family, a novel gene (MOR256-25) similar to the olfactory receptor family, a novel gene (LOC216715) similar to the olfactory receptor MOR256 family, a novel gene (MOR256-27) similar to the olfactory receptor family, a novel gene (MOR256-2) similar to the olfactory receptor family and three CpG islands, complete sequence Length = 203286 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 aaataaacctctacttccga 29 |||||||||||||||||||| Sbjct: 116168 aaataaacctctacttccga 116149
>gb|AC012594.7| Homo sapiens BAC clone RP11-519L16 from 2, complete sequence Length = 166702 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 caaaacatagaaacgaaaga 151 |||||||||||||||||||| Sbjct: 52957 caaaacatagaaacgaaaga 52976
>gb|AY815317.1| Schistosoma japonicum clone SJCHGC01580 unknown mRNA Length = 720 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 aagatttgtacaaaacatagaaac 145 |||| ||||||||||||||||||| Sbjct: 403 aagaattgtacaaaacatagaaac 380
>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124294 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 aacttccatggacggggcta 235 |||||||||||||||||||| Sbjct: 3168 aacttccatggacggggcta 3187
>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155927 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 aacttccatggacggggcta 235 |||||||||||||||||||| Sbjct: 36202 aacttccatggacggggcta 36183 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,715,731 Number of Sequences: 3902068 Number of extensions: 3715731 Number of successful extensions: 64936 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64836 Number of HSP's gapped (non-prelim): 97 length of query: 353 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 331 effective length of database: 17,147,199,772 effective search space: 5675723124532 effective search space used: 5675723124532 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)