ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 96 9e-17
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 96 9e-17
3emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa... 96 9e-17
4gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence 72 1e-09
5gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence 66 8e-08
6gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds 62 1e-06
7gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence 60 5e-06
8gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thali... 44 0.30
9gb|DQ115799.1| Bacillus badius penicillin G acylase (pac) gene, ... 42 1.2
10gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-1... 42 1.2
11gb|AC147329.2| Pan troglodytes BAC clone RP43-21F14 from 7, comp... 40 4.7
12gb|AY813463.1| Schistosoma japonicum SJCHGC01579 protein mRNA, c... 40 4.7
13gb|AC145901.2| Pan troglodytes BAC clone RP43-9F20 from 7, compl... 40 4.7
14gb|AY494082.1| Homo sapiens cell division cycle 25B (CDC25B) gen... 40 4.7
15gb|AY223400.1| Schistosoma japonicum clone ZZZ33 mRNA sequence 40 4.7
16gb|AC079589.6| Homo sapiens BAC clone RP11-589K23 from 7, comple... 40 4.7
17emb|AL109804.41|HS1009E24 Human DNA sequence from clone RP5-1009... 40 4.7
18emb|AL606829.13| Mouse DNA sequence from clone RP23-10M12 on chr... 40 4.7
19gb|AC012594.7| Homo sapiens BAC clone RP11-519L16 from 2, comple... 40 4.7
20gb|AY815317.1| Schistosoma japonicum clone SJCHGC01580 unknown mRNA 40 4.7
21emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb... 40 4.7
22emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.7

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                           
Query: 258     tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317
               ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| 
Sbjct: 3343077 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 3343018

                                                   
Query: 318     gcagcgtcaaacgagatgaactccacaccctgctcc 353
               ||||| || || |||||||||||  |||||||||||
Sbjct: 3343017 gcagcatcgaatgagatgaactcagcaccctgctcc 3342982



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                           
Query: 257     ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316
               |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| ||
Sbjct: 3351813 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 3351754

                                                    
Query: 317     agcagcgtcaaacgagatgaactccacaccctgctcc 353
                 | || || || |||||||||||  |||||||||||
Sbjct: 3351753 gacggcatcgaaagagatgaactcagcaccctgctcc 3351717



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 216      aacttccatggacggggcta 235
                ||||||||||||||||||||
Sbjct: 18082524 aacttccatggacggggcta 18082505



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                           
Query: 258     tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317
               ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| 
Sbjct: 3343022 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 3342963

                                                   
Query: 318     gcagcgtcaaacgagatgaactccacaccctgctcc 353
               ||||| || || |||||||||||  |||||||||||
Sbjct: 3342962 gcagcatcgaatgagatgaactcagcaccctgctcc 3342927



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                           
Query: 257     ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316
               |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| ||
Sbjct: 3351758 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 3351699

                                                    
Query: 317     agcagcgtcaaacgagatgaactccacaccctgctcc 353
                 | || || || |||||||||||  |||||||||||
Sbjct: 3351698 gacggcatcgaaagagatgaactcagcaccctgctcc 3351662



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 216      aacttccatggacggggcta 235
                ||||||||||||||||||||
Sbjct: 18008845 aacttccatggacggggcta 18008826



to top

>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137936

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                         
Query: 258   tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 317
             ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| 
Sbjct: 22130 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 22071

                                                 
Query: 318   gcagcgtcaaacgagatgaactccacaccctgctcc 353
             ||||| || || |||||||||||  |||||||||||
Sbjct: 22070 gcagcatcgaatgagatgaactcagcaccctgctcc 22035



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                         
Query: 257   ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 316
             |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| ||
Sbjct: 30866 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 30807

                                                  
Query: 317   agcagcgtcaaacgagatgaactccacaccctgctcc 353
               | || || || |||||||||||  |||||||||||
Sbjct: 30806 gacggcatcgaaagagatgaactcagcaccctgctcc 30770



to top

>gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence
          Length = 625

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 273 ccataggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaa 328
           ||||||| |||||||||||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 181 ccataggcgctgaagtgcttcaccctgaacttccactctcccttggcagcatcaaa 236



to top

>gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence
          Length = 1900

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 273  ccataggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaacgag 332
            ||||||| |||||| ||||||||| ||||||||||||| ||||| ||||| ||||| || 
Sbjct: 1733 ccataggcgctgaaatgcttcaccctgaacttccactctcccttggcagcatcaaaggac 1674

                                 
Query: 333  atgaactccacaccctgctcc 353
            |  |||||| | |||||||||
Sbjct: 1673 acaaactccgcgccctgctcc 1653



to top

>gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds
          Length = 732

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 268 caaaaccataggagctgaagtgcttcaccttgaacttccactc 310
           ||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 430 caaaatcatagcagctgaagtgcttcaccctgaacttccactc 388



to top

>gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence
          Length = 1871

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 276  taggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtc 325
            |||| |||||||||||||||| ||||||||||||| |||||  |||||||
Sbjct: 1565 taggcgctgaagtgcttcaccctgaacttccactctcccttgacagcgtc 1516



to top

>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 109560

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 162   agcattattcaaaaaacaaaag 183
             ||||||||||||||||||||||
Sbjct: 45685 agcattattcaaaaaacaaaag 45664



to top

>gb|DQ115799.1| Bacillus badius penicillin G acylase (pac) gene, complete cds;
           macronuclear
          Length = 2617

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 aaacaagaaagatttgtacaa 134
           |||||||||||||||||||||
Sbjct: 311 aaacaagaaagatttgtacaa 331



to top

>gb|AC006195.1|AC006195 Homo sapiens clone RP11-350H1 from 7p14-15, complete sequence
          Length = 150242

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   agcattattcaaaaaacaaaa 182
             |||||||||||||||||||||
Sbjct: 45337 agcattattcaaaaaacaaaa 45357



to top

>gb|AC147329.2| Pan troglodytes BAC clone RP43-21F14 from 7, complete sequence
          Length = 189770

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    cttcagcaaaaccataggag 281
              ||||||||||||||||||||
Sbjct: 109436 cttcagcaaaaccataggag 109455



to top

>gb|AY813463.1| Schistosoma japonicum SJCHGC01579 protein mRNA, complete cds
          Length = 1930

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 122 aagatttgtacaaaacatagaaac 145
           |||| |||||||||||||||||||
Sbjct: 595 aagaattgtacaaaacatagaaac 572



to top

>gb|AC145901.2| Pan troglodytes BAC clone RP43-9F20 from 7, complete sequence
          Length = 176187

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  cttcagcaaaaccataggag 281
            ||||||||||||||||||||
Sbjct: 5023 cttcagcaaaaccataggag 5004



to top

>gb|AY494082.1| Homo sapiens cell division cycle 25B (CDC25B) gene, complete cds
          Length = 13771

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 330  gagatgaactccacaccctgctcc 353
            |||||||||||||||| |||||||
Sbjct: 8403 gagatgaactccacactctgctcc 8380



to top

>gb|AY223400.1| Schistosoma japonicum clone ZZZ33 mRNA sequence
          Length = 1951

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 122 aagatttgtacaaaacatagaaac 145
           |||| |||||||||||||||||||
Sbjct: 596 aagaattgtacaaaacatagaaac 573



to top

>gb|AC079589.6| Homo sapiens BAC clone RP11-589K23 from 7, complete sequence
          Length = 19706

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  cttcagcaaaaccataggag 281
            ||||||||||||||||||||
Sbjct: 1363 cttcagcaaaaccataggag 1344



to top

>emb|AL109804.41|HS1009E24 Human DNA sequence from clone RP5-1009E24 on chromosome 20 Contains the
              5' end of the ADAM33 gene for a disintegrin and
              metalloproteinase domain 33 protein, the SN gene encoding
              sialoadhesin, the C20orf60 gene, the C20orf27 gene, the
              C20orf28 gene, the CENPB gene for centromere protein B, the
              CDC25B gene for cell division cycle protein 25B, the
              C20orf29 gene, the 5' end of the gene for a novel protein
              (KIAA1271) and nine CpG islands, complete sequence
          Length = 185820

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 330    gagatgaactccacaccctgctcc 353
              |||||||||||||||| |||||||
Sbjct: 127277 gagatgaactccacactctgctcc 127254



to top

>emb|AL606829.13| Mouse DNA sequence from clone RP23-10M12 on chromosome 11 Contains a
              novel gene (MOR280-1) similar to the olfactory receptor
              family, a novel gene (D330012D11Rik), the Zfp62 gene for
              zinc finger protein 62, the Mgat1 gene for mannoside
              acetylglucosaminyltransferase 1, a novel gene (MOR256-24)
              similar to the olfactory receptor family, a novel gene
              (MOR256-25) similar to the olfactory receptor family, a
              novel gene (LOC216715) similar to the olfactory receptor
              MOR256 family, a novel gene (MOR256-27) similar to the
              olfactory receptor family, a novel gene (MOR256-2) similar
              to the olfactory receptor family and three CpG islands,
              complete sequence
          Length = 203286

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     aaataaacctctacttccga 29
              ||||||||||||||||||||
Sbjct: 116168 aaataaacctctacttccga 116149



to top

>gb|AC012594.7| Homo sapiens BAC clone RP11-519L16 from 2, complete sequence
          Length = 166702

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   caaaacatagaaacgaaaga 151
             ||||||||||||||||||||
Sbjct: 52957 caaaacatagaaacgaaaga 52976



to top

>gb|AY815317.1| Schistosoma japonicum clone SJCHGC01580 unknown mRNA
          Length = 720

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 122 aagatttgtacaaaacatagaaac 145
           |||| |||||||||||||||||||
Sbjct: 403 aagaattgtacaaaacatagaaac 380



to top

>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 124294

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  aacttccatggacggggcta 235
            ||||||||||||||||||||
Sbjct: 3168 aacttccatggacggggcta 3187



to top

>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155927

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   aacttccatggacggggcta 235
             ||||||||||||||||||||
Sbjct: 36202 aacttccatggacggggcta 36183


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,715,731
Number of Sequences: 3902068
Number of extensions: 3715731
Number of successful extensions: 64936
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64836
Number of HSP's gapped (non-prelim): 97
length of query: 353
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 331
effective length of database: 17,147,199,772
effective search space: 5675723124532
effective search space used: 5675723124532
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top