ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA 151 2e-33
2dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
3dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 107 3e-20
5gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genom... 107 3e-20
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
7gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genom... 107 3e-20
8gb|AY109108.1| Zea mays PCO116815 mRNA sequence 96 1e-16
9gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome... 94 4e-16
10gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence 90 7e-15
11gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-05
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
13dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
14gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-05
15ref|NM_197253.1| Oryza sativa (japonica cultivar-group) putative... 56 1e-04
16gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
17gb|AY112223.1| Zea mays CL3071_1 mRNA sequence 52 0.002
18gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Can... 46 0.094
19gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 geno... 44 0.37
20gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2,... 42 1.5
21ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING fin... 42 1.5
22emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chro... 42 1.5
23dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
24dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
25dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
26emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on ch... 42 1.5
27gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, comp... 40 5.8
28ref|XM_543770.2| PREDICTED: Canis familiaris similar to solute c... 40 5.8
29gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosom... 40 5.8
30emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, comp... 40 5.8
31gb|AC162800.2| Mus musculus BAC clone RP24-173D2 from chromosome... 40 5.8
32emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chr... 40 5.8
33emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chr... 40 5.8
34gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, comp... 40 5.8
35gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, comple... 40 5.8
36ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment ... 40 5.8
37gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswel... 40 5.8
38gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, comp... 40 5.8
39gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosom... 40 5.8
40gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, co... 40 5.8
41gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Canc... 40 5.8
42gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, comp... 40 5.8
43ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothe... 40 5.8
44gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA 40 5.8
45emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-3... 40 5.8
46gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete... 40 5.8
47gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71... 40 5.8
48gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.40... 40 5.8
49gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachm... 40 5.8
50emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chro... 40 5.8
51gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park C... 40 5.8 
>ref|XM_469360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3534

 Score =  151 bits (76), Expect = 2e-33
 Identities = 182/216 (84%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                        
Query: 217  ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 276
            |||||||||||||| |||||| |  | |||||||||||| ||||||| || |||||||| 
Sbjct: 3083 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 3024

                                                                        
Query: 277  ttctgagacagggcatgctgtaacttttggatttcatccctctttttccttagcttttcg 336
            ||||| ||||| || || || | |||||| ||||| || ||||||||||| |||||||| 
Sbjct: 3023 ttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctcagcttttca 2964

                                                                        
Query: 337  agctccacttccgcatttagagccccttgaagctgaaggtatacggataggtctttgttt 396
            ||||| ||||| ||||| ||||| ||||| || ||||||||||| || |  |||||||||
Sbjct: 2963 agctcaacttctgcattgagagctccttggagttgaaggtatacagacaaatctttgttt 2904

                                                
Query: 397  ac-acagcagttgaacagtcaggtggagtttcatca 431
            || ||||| |||| |||||||||||| |||||||||
Sbjct: 2903 acaacagctgttgcacagtcaggtggcgtttcatca 2868
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>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full
            insert sequence
          Length = 3587

 Score =  151 bits (76), Expect = 2e-33
 Identities = 182/216 (84%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                        
Query: 217  ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 276
            |||||||||||||| |||||| |  | |||||||||||| ||||||| || |||||||| 
Sbjct: 3295 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 3236

                                                                        
Query: 277  ttctgagacagggcatgctgtaacttttggatttcatccctctttttccttagcttttcg 336
            ||||| ||||| || || || | |||||| ||||| || ||||||||||| |||||||| 
Sbjct: 3235 ttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctcagcttttca 3176

                                                                        
Query: 337  agctccacttccgcatttagagccccttgaagctgaaggtatacggataggtctttgttt 396
            ||||| ||||| ||||| ||||| ||||| || ||||||||||| || |  |||||||||
Sbjct: 3175 agctcaacttctgcattgagagctccttggagttgaaggtatacagacaaatctttgttt 3116

                                                
Query: 397  ac-acagcagttgaacagtcaggtggagtttcatca 431
            || ||||| |||| |||||||||||| |||||||||
Sbjct: 3115 acaacagctgttgcacagtcaggtggcgtttcatca 3080
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>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full
            insert sequence
          Length = 4411

 Score =  131 bits (66), Expect = 2e-27
 Identities = 161/190 (84%), Gaps = 2/190 (1%)
 Strand = Plus / Minus

                                                                        
Query: 244  ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatgctgtaacttt 303
            |||||||||||| | |||||||| |||||||| ||||| || |||||||| || | ||||
Sbjct: 4113 ggagccttctctttataaccggaagcttccattttctgtgatagggcatgttgcagcttt 4054

                                                                        
Query: 304  tggatttcatccctctttttccttagcttttcgagctccacttccgcatttagagcccct 363
            || ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| |||
Sbjct: 4053 tgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagagctcct 3994

                                                                        
Query: 364  tgaagctgaaggtatacggataggtctttgtttac-acagcagttgaacagtcaggtgga 422
            || || || |||||||| ||||   ||||||| || ||||| |||| |||||||||||| 
Sbjct: 3993 tggagttggaggtatacagata-aactttgttcacaacagctgttgcacagtcaggtggt 3935

                      
Query: 423  gtttcatcac 432
            ||||||||||
Sbjct: 3934 gtttcatcac 3925
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  107 bits (54), Expect = 3e-20
 Identities = 115/134 (85%), Gaps = 1/134 (0%)
 Strand = Plus / Minus

                                                                            
Query: 299      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
                ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 27542546 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27542487

                                                                            
Query: 359      ccccttgaagctgaaggtatacggataggtctttgtttac-acagcagttgaacagtcag 417
                | ||||| || ||||||||||| || |  ||||||||||| ||||| |||| ||||||||
Sbjct: 27542486 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagtcag 27542427

                              
Query: 418      gtggagtttcatca 431
                |||| |||||||||
Sbjct: 27542426 gtggcgtttcatca 27542413



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 115/135 (85%), Gaps = 2/135 (1%)
 Strand = Plus / Minus

                                                                          
Query: 299    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
              ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 651915 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651856

                                                                          
Query: 359    ccccttgaagctgaaggtatacggataggtctttgtttac-acagcagttgaacagtcag 417
              | ||||| || || |||||||| ||||   ||||||| || ||||| |||| ||||||||
Sbjct: 651855 ctccttggagttggaggtatacagata-aactttgttcacaacagctgttgcacagtcag 651797

                             
Query: 418    gtggagtttcatcac 432
              |||| ||||||||||
Sbjct: 651796 gtggtgtttcatcac 651782



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                            
Query: 217      ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 276
                |||||||||||||| |||||| |  | |||||||||||| ||||||| || |||||||| 
Sbjct: 27542733 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 27542674

                           
Query: 277      ttctgagacag 287
                ||||| |||||
Sbjct: 27542673 ttctgtgacag 27542663



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                            
Query: 299      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
                ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 12395975 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12396034

                                   
Query: 359      ccccttgaagctgaaggta 377
                | |||||||||| ||||||
Sbjct: 12396035 ctccttgaagcttaaggta 12396053



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 244    ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 293
              |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 652074 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652025



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 154      gcatctagtttcttctcagcctcac 178
                |||||||||||||||||||| ||||
Sbjct: 12395727 gcatctagtttcttctcagcttcac 12395751
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>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete
             sequence
          Length = 27470

 Score =  107 bits (54), Expect = 3e-20
 Identities = 115/134 (85%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                         
Query: 299   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
             ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 20228 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 20287

                                                                         
Query: 359   ccccttgaagctgaaggtatacggataggtctttgtttac-acagcagttgaacagtcag 417
             | ||||| || ||||||||||| || |  ||||||||||| ||||| |||| ||||||||
Sbjct: 20288 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagtcag 20347

                           
Query: 418   gtggagtttcatca 431
             |||| |||||||||
Sbjct: 20348 gtggcgtttcatca 20361



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                         
Query: 217   ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 276
             |||||||||||||| |||||| |  | |||||||||||| ||||||| || |||||||| 
Sbjct: 20041 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 20100

                        
Query: 277   ttctgagacag 287
             ||||| |||||
Sbjct: 20101 ttctgtgacag 20111
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  107 bits (54), Expect = 3e-20
 Identities = 115/134 (85%), Gaps = 1/134 (0%)
 Strand = Plus / Minus

                                                                            
Query: 299      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
                ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 27633869 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27633810

                                                                            
Query: 359      ccccttgaagctgaaggtatacggataggtctttgtttac-acagcagttgaacagtcag 417
                | ||||| || ||||||||||| || |  ||||||||||| ||||| |||| ||||||||
Sbjct: 27633809 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagtcag 27633750

                              
Query: 418      gtggagtttcatca 431
                |||| |||||||||
Sbjct: 27633749 gtggcgtttcatca 27633736



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 115/135 (85%), Gaps = 2/135 (1%)
 Strand = Plus / Minus

                                                                          
Query: 299    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
              ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 651913 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651854

                                                                          
Query: 359    ccccttgaagctgaaggtatacggataggtctttgtttac-acagcagttgaacagtcag 417
              | ||||| || || |||||||| ||||   ||||||| || ||||| |||| ||||||||
Sbjct: 651853 ctccttggagttggaggtatacagata-aactttgttcacaacagctgttgcacagtcag 651795

                             
Query: 418    gtggagtttcatcac 432
              |||| ||||||||||
Sbjct: 651794 gtggtgtttcatcac 651780



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                            
Query: 217      ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 276
                |||||||||||||| |||||| |  | |||||||||||| ||||||| || |||||||| 
Sbjct: 27634056 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 27633997

                           
Query: 277      ttctgagacag 287
                ||||| |||||
Sbjct: 27633996 ttctgtgacag 27633986



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                            
Query: 299      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
                ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 12392738 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12392797

                                   
Query: 359      ccccttgaagctgaaggta 377
                | |||||||||| ||||||
Sbjct: 12392798 ctccttgaagcttaaggta 12392816



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 244    ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 293
              |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 652072 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652023



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 154      gcatctagtttcttctcagcctcac 178
                |||||||||||||||||||| ||||
Sbjct: 12392490 gcatctagtttcttctcagcttcac 12392514
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>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence,
            complete sequence
          Length = 123406

 Score =  107 bits (54), Expect = 3e-20
 Identities = 115/134 (85%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                        
Query: 299  acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
            ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 7968 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 8027

                                                                        
Query: 359  ccccttgaagctgaaggtatacggataggtctttgtttac-acagcagttgaacagtcag 417
            | ||||| || ||||||||||| || |  ||||||||||| ||||| |||| ||||||||
Sbjct: 8028 ctccttggagttgaaggtatacagacaaatctttgtttacaacagctgttgcacagtcag 8087

                          
Query: 418  gtggagtttcatca 431
            |||| |||||||||
Sbjct: 8088 gtggcgtttcatca 8101



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                        
Query: 217  ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 276
            |||||||||||||| |||||| |  | |||||||||||| ||||||| || |||||||| 
Sbjct: 7781 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 7840

                       
Query: 277  ttctgagacag 287
            ||||| |||||
Sbjct: 7841 ttctgtgacag 7851
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>gb|AY109108.1| Zea mays PCO116815 mRNA sequence
          Length = 1041

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 220/276 (79%), Gaps = 1/276 (0%)
 Strand = Plus / Minus

                                                                       
Query: 157 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggcgagcttc 216
           |||| |||||||||||| |||| |||||||   |||||||| || || |||| |||||||
Sbjct: 801 tctaatttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttc 742

                                                                       
Query: 217 ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 276
           |||||||||||||| || || ||  | ||||||||||| |  || || || || ||||| 
Sbjct: 741 ctcatgtcctcctcctgtacgctctgtggagccttctcgcgatagccagaggcgtccatt 682

                                                                       
Query: 277 ttctgagacagggcatgctgtaacttttggatttcatccctctttttccttagcttttcg 336
           ||||| | ||| |||| ||||| |||||| || |||||  | || ||| |||||||||| 
Sbjct: 681 ttctgcgccagtgcattctgtagcttttgaatctcatcttttttcttctttagcttttca 622

                                                                       
Query: 337 agctccacttccgcatttagagccccttgaagctgaaggtatacggataggtctttgttt 396
            | ||  | || ||||||| ||| ||||| ||||||||||| || || | ||||||||| 
Sbjct: 621 cgttcagcgtctgcatttaaagctccttggagctgaaggtacacagacaagtctttgttg 562

                                               
Query: 397 ac-acagcagttgaacagtcaggtggagtttcatca 431
           || |||||||||| ||| || | |||||||||||||
Sbjct: 561 acaacagcagttgcacaatcggctggagtttcatca 526
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>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 115/135 (85%), Gaps = 2/135 (1%)
 Strand = Plus / Minus

                                                                         
Query: 299   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
             ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 37796 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 37737

                                                                         
Query: 359   ccccttgaagctgaaggtatacggataggtctttgtttac-acagcagttgaacagtcag 417
             | ||||| || || |||||||| ||||   ||||||| || ||||| |||| ||||||||
Sbjct: 37736 ctccttggagttggaggtatacagata-aactttgttcacaacagctgttgcacagtcag 37678

                            
Query: 418   gtggagtttcatcac 432
             |||| ||||||||||
Sbjct: 37677 gtggtgtttcatcac 37663



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 244   ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 293
             |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 37955 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 37906
to top
>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence
          Length = 1244

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 220/277 (79%), Gaps = 1/277 (0%)
 Strand = Plus / Minus

                                                                       
Query: 157 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggcgagcttc 216
           |||| |||||||||||| |||| |||||||   ||||| || || || |||| |||||| 
Sbjct: 953 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggggagcttt 894

                                                                       
Query: 217 ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 276
           |||||||||||||| || || ||  | ||||||||||| |  || || || || ||||| 
Sbjct: 893 ctcatgtcctcctcctgcacgctctgtggagccttctcgcgatacccagaggcgtccatt 834

                                                                       
Query: 277 ttctgagacagggcatgctgtaacttttggatttcatccctctttttccttagcttttcg 336
           ||||| | ||| ||||  |||| |||||| ||||||||  | || |||||||||||||| 
Sbjct: 833 ttctgtgccagtgcattttgtagcttttgaatttcatcttttttcttccttagcttttca 774

                                                                       
Query: 337 agctccacttccgcatttagagccccttgaagctgaaggtatacggataggtctttgttt 396
            ||||  | ||  |||||| | | ||||| ||||||||||| || || | ||||||||| 
Sbjct: 773 cgctcagcatcttcatttaaatctccttggagctgaaggtacacagacaagtctttgttg 714

                                                
Query: 397 ac-acagcagttgaacagtcaggtggagtttcatcac 432
           || |||||||||| ||| || ||||||||||||||||
Sbjct: 713 acaacagcagttgcacaatcgggtggagtttcatcac 677
to top
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05
              map S21174S, complete sequence
          Length = 178867

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/97 (82%)
 Strand = Plus / Minus

                                                                          
Query: 299    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
              ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 141536 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 141477

                                                   
Query: 359    ccccttgaagctgaaggtatacggataggtctttgtt 395
              | ||| | ||||| |||||||||||||| ||||||||
Sbjct: 141476 ctcctcgtagctggaggtatacggatagatctttgtt 141440
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/97 (82%)
 Strand = Plus / Minus

                                                                            
Query: 299      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
                ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 18843800 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 18843741

                                                     
Query: 359      ccccttgaagctgaaggtatacggataggtctttgtt 395
                | ||| | ||||| |||||||||||||| ||||||||
Sbjct: 18843740 ctcctcgtagctggaggtatacggatagatctttgtt 18843704
to top
>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full
            insert sequence
          Length = 3639

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                        
Query: 289  gcatgctgtaacttttggatttcatccctctttttccttagcttttcgagctccacttcc 348
            ||||| |||| |||||||||| |||| ||||| ||||||||||||||  ||||  | || 
Sbjct: 3384 gcatggtgtagcttttggattccatctctcttcttccttagcttttcacgctcagcctct 3325

                                         
Query: 349  gcatttagagccccttgaagctgaaggta 377
            |||||||  || |||||||||| ||||||
Sbjct: 3324 gcatttatggctccttgaagcttaaggta 3296



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 154  gcatctagtttcttctcagcctcac 178
            |||||||||||||||||||| ||||
Sbjct: 3519 gcatctagtttcttctcagcttcac 3495
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 80/97 (82%)
 Strand = Plus / Minus

                                                                            
Query: 299      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
                ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 18855054 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 18854995

                                                     
Query: 359      ccccttgaagctgaaggtatacggataggtctttgtt 395
                | ||| | ||||| |||||||||||||| ||||||||
Sbjct: 18854994 ctcctcgtagctggaggtatacggatagatctttgtt 18854958
to top
>ref|NM_197253.1| Oryza sativa (japonica cultivar-group) putative valyl tRNA synthetase
            (OSJNBa0062C05.27), mRNA
          Length = 3171

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                        
Query: 300  cttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagagc 359
            |||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  ||||||||
Sbjct: 3015 cttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagagc 2956

                                                
Query: 360  cccttgaagctgaaggtatacggataggtctttgtt 395
             ||| | ||||| |||||||||||||| ||||||||
Sbjct: 2955 tcctcgtagctggaggtatacggatagatctttgtt 2920
to top
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                         
Query: 299   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 358
             ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 54993 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 55052

                                
Query: 359   ccccttgaagctgaaggta 377
             | |||||||||| ||||||
Sbjct: 55053 ctccttgaagcttaaggta 55071



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 154   gcatctagtttcttctcagcctcac 178
             |||||||||||||||||||| ||||
Sbjct: 54745 gcatctagtttcttctcagcttcac 54769
to top
>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence
          Length = 1082

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                       
Query: 157 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggcgagcttc 216
           |||| |||||||||||| |||| |||||||   ||||| || || || |||| |||||| 
Sbjct: 446 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagcttt 505

                         
Query: 217 ctcatgtcctcctc 230
           ||||||||||||||
Sbjct: 506 ctcatgtcctcctc 519



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 62/73 (84%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                       
Query: 361 ccttgaagctgaaggtatacggataggtctttgtttaca-cagcagttgaacagtcaggt 419
           ||||| ||||||||||| || || | ||||||||| ||| ||||||||| ||| || | |
Sbjct: 650 ccttggagctgaaggtacacagacaagtctttgttgacaacagcagttgcacaatcggct 709

                        
Query: 420 ggagtttcatcac 432
           |||||||||||||
Sbjct: 710 ggagtttcatcac 722
to top
>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186915

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 26     tttgaattttctataaatgtgacatca 52
              |||||| ||||||||||||||||||||
Sbjct: 132214 tttgaaatttctataaatgtgacatca 132188
to top
>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
             sequence
          Length = 121915

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 24    catttgaattttctataaatgt 45
             ||||||||||||||||||||||
Sbjct: 75708 catttgaattttctataaatgt 75687
to top
>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence
          Length = 81567

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    atttgaattttctataaatgt 45
             |||||||||||||||||||||
Sbjct: 74176 atttgaattttctataaatgt 74196
to top
>ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING finger protein 31 (Zinc
            in-between-RING-finger ubiquitin-associated domain
            protein) (LOC480259), mRNA
          Length = 3490

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 173  cctcaccgatgacccgcagttgctc 197
            ||||||||||||| |||||||||||
Sbjct: 2442 cctcaccgatgacacgcagttgctc 2466
to top
>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the
             3' end of the Col27a1 gene for procollagen type XXVII
             alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1,
             2 and 3, an orosomucoid pseudogene, the gene for a novel
             protein similar to human AT-hook protein AKNA, gene
             4933437N03Rik, the Whrn gene for whirlin and two CpG
             islands, complete sequence
          Length = 214370

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   cgagcttcctcatgtcctcct 229
             |||||||||||||||||||||
Sbjct: 31755 cgagcttcctcatgtcctcct 31735
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 79      tatcaacttccaaacaaaaat 99
               |||||||||||||||||||||
Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822
to top
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     tatcaacttccaaacaaaaat 99
              |||||||||||||||||||||
Sbjct: 120044 tatcaacttccaaacaaaaat 120064
to top
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    tatcaacttccaaacaaaaat 99
             |||||||||||||||||||||
Sbjct: 26437 tatcaacttccaaacaaaaat 26457
to top
>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete
              sequence
          Length = 168158

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     aatgtgacatcaccaccatcc 61
              |||||||||||||||||||||
Sbjct: 140982 aatgtgacatcaccaccatcc 141002
to top
>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence
          Length = 203728

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    ccatttgaattttctataaa 42
             ||||||||||||||||||||
Sbjct: 23208 ccatttgaattttctataaa 23189
to top
>ref|XM_543770.2| PREDICTED: Canis familiaris similar to solute carrier family 7
            (cationic amino acid transporter, y+ system), member 3
            (LOC486643), mRNA
          Length = 3279

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  atgctgtaacttttggattt 310
            ||||||||||||||||||||
Sbjct: 1571 atgctgtaacttttggattt 1590
to top
>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete
             sequence
          Length = 156282

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    aacttccaaacaaaaatgcc 102
             ||||||||||||||||||||
Sbjct: 16747 aacttccaaacaaaaatgcc 16766
to top
>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence
          Length = 15122

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   aacttccaaacaaaaatgcc 102
            ||||||||||||||||||||
Sbjct: 3649 aacttccaaacaaaaatgcc 3668
to top
>gb|AC162800.2| Mus musculus BAC clone RP24-173D2 from chromosome 17, complete sequence
          Length = 199202

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 353   ttagagccccttgaagctgaaggt 376
             ||||| ||||||||||||||||||
Sbjct: 47915 ttagatccccttgaagctgaaggt 47938
to top
>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the
             HHEX gene for hematopoietically expressed homeobox, the 5'
             end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a
             eukaryotic translation initiation factor 2 subunit 2
             (eIF-2-beta) pseudogene and four CpG islands, complete
             sequence
          Length = 190144

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   agagccccttgaagctgaag 374
             ||||||||||||||||||||
Sbjct: 76717 agagccccttgaagctgaag 76736
to top
>emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chromosome 4 Contains a
             ribosomal protein S18 (Rps18) pseudogene, complete
             sequence
          Length = 156572

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   ttccatcttctgagacaggg 289
             ||||||||||||||||||||
Sbjct: 31116 ttccatcttctgagacaggg 31135
to top
>gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, complete sequence
          Length = 198687

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    cctctttttccttagctttt 334
              ||||||||||||||||||||
Sbjct: 147791 cctctttttccttagctttt 147772
to top
>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence
          Length = 55775

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   gcttcctcatgtcctcctct 231
             ||||||||||||||||||||
Sbjct: 23507 gcttcctcatgtcctcctct 23526
to top
>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA
            (Snap), mRNA
          Length = 2069

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   gaattttctataaatgtgac 48
            ||||||||||||||||||||
Sbjct: 1762 gaattttctataaatgtgac 1743
to top
>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 185918

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     gaattttctataaatgtgac 48
              ||||||||||||||||||||
Sbjct: 106242 gaattttctataaatgtgac 106223
to top
>gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, complete sequence
          Length = 168521

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   attttctataaatgtgacat 50
            ||||||||||||||||||||
Sbjct: 1961 attttctataaatgtgacat 1980
to top
>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence
          Length = 195483

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     aacttccaaacaaaaatgcc 102
              ||||||||||||||||||||
Sbjct: 160602 aacttccaaacaaaaatgcc 160621
to top
>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence
          Length = 143516

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tgaattttctataaatgtga 47
              ||||||||||||||||||||
Sbjct: 121095 tgaattttctataaatgtga 121076
to top
>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172507

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     catttgaattttctataaat 43
              ||||||||||||||||||||
Sbjct: 161099 catttgaattttctataaat 161080
to top
>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence
          Length = 155354

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    attttctataaatgtgacat 50
             ||||||||||||||||||||
Sbjct: 23774 attttctataaatgtgacat 23793
to top
>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein
            6430402L03 (LOC302412), mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 213  cttcctcatgtcctcctctt 232
            ||||||||||||||||||||
Sbjct: 1005 cttcctcatgtcctcctctt 986
to top
>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA
          Length = 2054

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   gaattttctataaatgtgac 48
            ||||||||||||||||||||
Sbjct: 1730 gaattttctataaatgtgac 1711
to top
>emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-318A9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175584

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    atgtgacatcaccaccatcc 61
             ||||||||||||||||||||
Sbjct: 71007 atgtgacatcaccaccatcc 71026
to top
>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence
          Length = 229073

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    ctgtaacttttggatttcat 313
              ||||||||||||||||||||
Sbjct: 161157 ctgtaacttttggatttcat 161138
to top
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete
              sequence
          Length = 299903

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     gaattttctataaatgtgac 48
              ||||||||||||||||||||
Sbjct: 288396 gaattttctataaatgtgac 288377
to top
>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence
          Length = 198582

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tgaattttctataaatgtga 47
             ||||||||||||||||||||
Sbjct: 63377 tgaattttctataaatgtga 63358
to top
>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete
            cds
          Length = 2038

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   gaattttctataaatgtgac 48
            ||||||||||||||||||||
Sbjct: 1718 gaattttctataaatgtgac 1699
to top
>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete
              sequence
          Length = 216415

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     tttgaattttctataaatgt 45
              ||||||||||||||||||||
Sbjct: 104442 tttgaattttctataaatgt 104461
to top
>gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 171887

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cttttggatttcatccctct 319
             ||||||||||||||||||||
Sbjct: 59407 cttttggatttcatccctct 59388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,536,851
Number of Sequences: 3902068
Number of extensions: 4536851
Number of successful extensions: 124140
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123784
Number of HSP's gapped (non-prelim): 336
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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