ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CISY3_YEAST (P43635) Citrate synthase 3 (EC 2.3.3.1) 29 2.5
2COFH_SYNP6 (Q5N3T7) FO synthase subunit 2 (EC 2.5.1.-) (7,8-dide... 28 5.7
3AFAM_MOUSE (O89020) Afamin precursor (Alpha-albumin) (Alpha-Alb) 28 7.4
4ENO_PYRHO (O59605) Enolase (EC 4.2.1.11) (2-phosphoglycerate deh... 28 7.4
5KLF3_MOUSE (Q60980) Krueppel-like factor 3 (Basic krueppel-like ... 28 7.4
6ENO_METKA (Q8TUV6) Enolase (EC 4.2.1.11) (2-phosphoglycerate deh... 27 9.7
7ENO_METAC (Q8TQ79) Enolase (EC 4.2.1.11) (2-phosphoglycerate deh... 27 9.7

>CISY3_YEAST (P43635) Citrate synthase 3 (EC 2.3.3.1)|
          Length = 486

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = +2

Query: 176 GRVYTNL----HTLTSHSNPKKWCLGNCMLLG 259
           GR+Y+N+    H L  +S    WC   C LLG
Sbjct: 213 GRIYSNITNEGHPLGQYSEEVDWCTNICSLLG 244



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>COFH_SYNP6 (Q5N3T7) FO synthase subunit 2 (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase
           subunit 2)
          Length = 386

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +3

Query: 138 PEPLDA-----IVQTVHQAGYTPTS-IRSPHIPTPKNGA 236
           PE LD+     I+QT HQ G   TS + S H+ TP   A
Sbjct: 199 PEKLDSATWKTIIQTAHQVGLPTTSTLLSGHLETPSQQA 237



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>AFAM_MOUSE (O89020) Afamin precursor (Alpha-albumin) (Alpha-Alb)|
          Length = 611

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 15  AMINNETNQLQQEGKKESARHFL 83
           AM+  E NQ Q+ GK    RHFL
Sbjct: 410 AMVQQECNQFQELGKDTLQRHFL 432



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>ENO_PYRHO (O59605) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 428

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 141 EPLDAIVQTVHQAGYTP 191
           EPLDA+++ + +AGY P
Sbjct: 220 EPLDALIKAIEEAGYKP 236



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>KLF3_MOUSE (Q60980) Krueppel-like factor 3 (Basic krueppel-like factor)|
           (CACCC-box-binding protein BKLF) (TEF-2)
          Length = 344

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 291 RRGNLPAANESPSSIQLPRH 232
           +RG+ PAA  SPSS++ P H
Sbjct: 68  KRGSPPAAGGSPSSLKFPSH 87



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>ENO_METKA (Q8TUV6) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 427

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 141 EPLDAIVQTVHQAGYTP 191
           EPLD +V+ + +AGY P
Sbjct: 218 EPLDVLVEAIEEAGYAP 234



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>ENO_METAC (Q8TQ79) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)|
           (2-phospho-D-glycerate hydro-lyase)
          Length = 429

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 141 EPLDAIVQTVHQAGYTPTSI 200
           E LDA+VQ + +AGYT + +
Sbjct: 230 EALDALVQAIEEAGYTESEV 249


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,695,630
Number of Sequences: 219361
Number of extensions: 851728
Number of successful extensions: 2103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2103
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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