ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107387.1| Zea mays PCO149313 mRNA sequence 210 2e-51
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
3dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
4dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
5dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 5e-34
6dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 5e-34
7ref|NM_191406.1| Oryza sativa (japonica cultivar-group), predic... 151 2e-33
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 121 2e-24
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
10gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 121 2e-24
11dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
12emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in... 44 0.32
13emb|AL592283.5| Mouse DNA sequence from clone RP23-386C23 on chr... 44 0.32
14gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 42 1.2
15gb|AC144645.17| Medicago truncatula clone mth2-11e15, complete s... 42 1.2
16gb|AC013480.12| Homo sapiens BAC clone RP11-564O16 from 2, compl... 42 1.2
17ref|XM_640880.1| Dictyostelium discoideum hypothetical protein (... 40 4.9
18gb|U32572.1| Trypanosoma cruzi mucin (muc.ca-1) gene, partial cds 40 4.9
19gb|U32447.1| Trypanosoma cruzi mucin-like protein (muc.ca-3) gen... 40 4.9
20gb|L20809.1| Trypanosoma cruzi mucin-like protein gene, complete... 40 4.9
21gb|AC117686.10| Mus musculus chromosome 16, clone RP23-440B15, c... 40 4.9
22emb|AJ891031.1| Sus scrofa SP-C gene for surfactant protein C, e... 40 4.9
23emb|AJ891124.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 4.9
24emb|AJ891123.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 4.9
25gb|AC129601.4| Mus musculus BAC clone RP23-444N1 from chromosome... 40 4.9
26ref|XM_759090.1| Theileria parva strain Muguga chromosome 4 hypo... 40 4.9
27emb|AL359878.13| Human DNA sequence from clone RP11-363N22 on ch... 40 4.9
28emb|AL163191.2|SPAC140 S.pombe chromosome I cosmid c140 40 4.9
29gb|AC111099.15| Mus musculus chromosome 1, clone RP23-177A20, co... 40 4.9
30gb|AC009349.6|AC009349 Drosophila melanogaster, chromosome 3R, r... 40 4.9
31gb|AC008287.4|AC008287 Drosophila melanogaster, chromosome 3R, r... 40 4.9
32gb|AC012680.5|AC012680 Arabidopsis thaliana chromosome 1 BAC T11... 40 4.9
33emb|AJ920269.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 4.9
34emb|AJ920268.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 4.9
35emb|AJ920267.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 4.9
36emb|AJ920266.1| Sus scrofa mRNA for surfactant protein C (SP-C g... 40 4.9
37gb|AE003778.3| Drosophila melanogaster chromosome 3R, section 11... 40 4.9
38gb|U61533.1|TCU61533 Trypanosoma cruzi mucin-like protein (MUC.T... 40 4.9
39gb|U32346.1|TCU32346 Trypanosoma cruzi mucin-like protein (muc.c... 40 4.9
40emb|AL355177.14| Mouse DNA sequence from clone RP21-61H21 on chr... 40 4.9 
>gb|AY107387.1| Zea mays PCO149313 mRNA sequence
          Length = 1336

 Score =  210 bits (106), Expect = 2e-51
 Identities = 148/162 (91%)
 Strand = Plus / Minus

                                                                        
Query: 209  tttacctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagccc 268
            |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 1086 tttacctcaccgccccttggggttcatgatctgcgagaagacggcgctaggcgtcagccc 1027

                                                                        
Query: 269  gtccgagtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgt 328
             |||||||| || ||||||||||||||||||||||||||||| ||||| || || || ||
Sbjct: 1026 atccgagtctatactcgcgacgctttggtcgcccatgcttatagaagtggtggttgtggt 967

                                                      
Query: 329  ggtggtgcttgagtcgatcgacgggtcattggggtccttctt 370
            |||||||||||| |||||||| ||||| || |||||||||||
Sbjct: 966  ggtggtgcttgactcgatcgatgggtcgttcgggtccttctt 925
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  153 bits (77), Expect = 5e-34
 Identities = 137/157 (87%)
 Strand = Plus / Minus

                                                                            
Query: 214      ctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccg 273
                ||||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| |
Sbjct: 32458055 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 32457996

                                                                            
Query: 274      agtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtgg 333
                |||| ||||| || || ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 32457995 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 32457936

                                                     
Query: 334      tgcttgagtcgatcgacgggtcattggggtccttctt 370
                ||||||| |||||||| || |||||||| ||||||||
Sbjct: 32457935 tgcttgactcgatcgatggatcattgggatccttctt 32457899
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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score =  153 bits (77), Expect = 5e-34
 Identities = 137/157 (87%)
 Strand = Plus / Minus

                                                                         
Query: 214   ctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccg 273
             ||||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| |
Sbjct: 45576 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 45517

                                                                         
Query: 274   agtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtgg 333
             |||| ||||| || || ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 45516 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 45457

                                                  
Query: 334   tgcttgagtcgatcgacgggtcattggggtccttctt 370
             ||||||| |||||||| || |||||||| ||||||||
Sbjct: 45456 tgcttgactcgatcgatggatcattgggatccttctt 45420
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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1143G03
          Length = 137770

 Score =  153 bits (77), Expect = 5e-34
 Identities = 137/157 (87%)
 Strand = Plus / Minus

                                                                          
Query: 214    ctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccg 273
              ||||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| |
Sbjct: 137552 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 137493

                                                                          
Query: 274    agtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtgg 333
              |||| ||||| || || ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 137492 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 137433

                                                   
Query: 334    tgcttgagtcgatcgacgggtcattggggtccttctt 370
              ||||||| |||||||| || |||||||| ||||||||
Sbjct: 137432 tgcttgactcgatcgatggatcattgggatccttctt 137396
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>dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A03, full
            insert sequence
          Length = 1761

 Score =  153 bits (77), Expect = 5e-34
 Identities = 137/157 (87%)
 Strand = Plus / Minus

                                                                        
Query: 214  ctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccg 273
            ||||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| |
Sbjct: 1505 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 1446

                                                                        
Query: 274  agtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtgg 333
            |||| ||||| || || ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 1445 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 1386

                                                 
Query: 334  tgcttgagtcgatcgacgggtcattggggtccttctt 370
            ||||||| |||||||| || |||||||| ||||||||
Sbjct: 1385 tgcttgactcgatcgatggatcattgggatccttctt 1349
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>dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064M23, full
            insert sequence
          Length = 3155

 Score =  153 bits (77), Expect = 5e-34
 Identities = 137/157 (87%)
 Strand = Plus / Minus

                                                                        
Query: 214  ctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccg 273
            ||||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| |
Sbjct: 2922 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 2863

                                                                        
Query: 274  agtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtgg 333
            |||| ||||| || || ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 2862 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 2803

                                                 
Query: 334  tgcttgagtcgatcgacgggtcattggggtccttctt 370
            ||||||| |||||||| || |||||||| ||||||||
Sbjct: 2802 tgcttgactcgatcgatggatcattgggatccttctt 2766
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>ref|NM_191406.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2691

 Score =  151 bits (76), Expect = 2e-33
 Identities = 136/156 (87%)
 Strand = Plus / Minus

                                                                        
Query: 215  tcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccgtccga 274
            |||||| |||||||||||||||||||| |||||||| ||||| || || |||||||| ||
Sbjct: 2691 tcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgga 2632

                                                                        
Query: 275  gtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtggtggt 334
            ||| ||||| || || ||||||||||||||||||||||| || || ||||| || |||||
Sbjct: 2631 gtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtggt 2572

                                                
Query: 335  gcttgagtcgatcgacgggtcattggggtccttctt 370
            |||||| |||||||| || |||||||| ||||||||
Sbjct: 2571 gcttgactcgatcgatggatcattgggatccttctt 2536
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  121 bits (61), Expect = 2e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                            
Query: 210      ttacctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccg 269
                ||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| 
Sbjct: 12284690 ttacctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagccca 12284631

                                                                            
Query: 270      tccgagtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtg 329
                |||||||| || || || || || || || ||||||||||| || || || || || || 
Sbjct: 12284630 tccgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtc 12284571

                                                         
Query: 330      gtggtgcttgagtcgatcgacgggtcattggggtccttctt 370
                ||||||||||| ||||| || || |||||||| ||||||||
Sbjct: 12284570 gtggtgcttgactcgatagatggatcattgggatccttctt 12284530
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  121 bits (61), Expect = 2e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                            
Query: 210      ttacctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccg 269
                ||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| 
Sbjct: 12281453 ttacctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagccca 12281394

                                                                            
Query: 270      tccgagtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtg 329
                |||||||| || || || || || || || ||||||||||| || || || || || || 
Sbjct: 12281393 tccgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtc 12281334

                                                         
Query: 330      gtggtgcttgagtcgatcgacgggtcattggggtccttctt 370
                ||||||||||| ||||| || || |||||||| ||||||||
Sbjct: 12281333 gtggtgcttgactcgatagatggatcattgggatccttctt 12281293
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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score =  121 bits (61), Expect = 2e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                         
Query: 210   ttacctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccg 269
             ||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| 
Sbjct: 54223 ttacctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagccca 54164

                                                                         
Query: 270   tccgagtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtg 329
             |||||||| || || || || || || || ||||||||||| || || || || || || 
Sbjct: 54163 tccgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtc 54104

                                                      
Query: 330   gtggtgcttgagtcgatcgacgggtcattggggtccttctt 370
             ||||||||||| ||||| || || |||||||| ||||||||
Sbjct: 54103 gtggtgcttgactcgatagatggatcattgggatccttctt 54063
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>dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full
            insert sequence
          Length = 3171

 Score =  121 bits (61), Expect = 2e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                        
Query: 210  ttacctcaccgccccttggggttcatgatctgcgagaagaccgcgctcggcgtcagcccg 269
            ||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| 
Sbjct: 2929 ttacctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagccca 2870

                                                                        
Query: 270  tccgagtcgatgctcgcgacgctttggtcgcccatgcttatggaagttgtcgtggtcgtg 329
            |||||||| || || || || || || || ||||||||||| || || || || || || 
Sbjct: 2869 tccgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtc 2810

                                                     
Query: 330  gtggtgcttgagtcgatcgacgggtcattggggtccttctt 370
            ||||||||||| ||||| || || |||||||| ||||||||
Sbjct: 2809 gtggtgcttgactcgatagatggatcattgggatccttctt 2769
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>emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in linkage group 11,
            complete sequence
          Length = 158354

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 151  atgaaaacacattgaatgaataaatt 176
            ||||||||||||| ||||||||||||
Sbjct: 7425 atgaaaacacatttaatgaataaatt 7450
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>emb|AL592283.5| Mouse DNA sequence from clone RP23-386C23 on chromosome 4, complete
             sequence
          Length = 197763

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 102   caaggcaaggcagaaatgtcta 123
             ||||||||||||||||||||||
Sbjct: 93886 caaggcaaggcagaaatgtcta 93865
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 255     ctcggcgtcagcccgtccgag 275
               |||||||||||||||||||||
Sbjct: 1910765 ctcggcgtcagcccgtccgag 1910745
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>gb|AC144645.17| Medicago truncatula clone mth2-11e15, complete sequence
          Length = 124394

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 148   ctcatgaaaacacattgaatg 168
             |||||||||||||||||||||
Sbjct: 55325 ctcatgaaaacacattgaatg 55345
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>gb|AC013480.12| Homo sapiens BAC clone RP11-564O16 from 2, complete sequence
          Length = 128466

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 155  aaacacattgaatgaataaat 175
            |||||||||||||||||||||
Sbjct: 9561 aaacacattgaatgaataaat 9541
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>ref|XM_640880.1| Dictyostelium discoideum hypothetical protein (DDB0216656), partial
            mRNA
          Length = 3588

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaaacacattgaatgaat 171
            ||||||||||||||||||||
Sbjct: 3025 tgaaaacacattgaatgaat 3006
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>gb|U32572.1| Trypanosoma cruzi mucin (muc.ca-1) gene, partial cds
          Length = 235

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gttgtcgtggtcgtggtggt 334
           ||||||||||||||||||||
Sbjct: 171 gttgtcgtggtcgtggtggt 152
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>gb|U32447.1| Trypanosoma cruzi mucin-like protein (muc.ca-3) gene, complete cds
          Length = 652

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gttgtcgtggtcgtggtggt 334
           ||||||||||||||||||||
Sbjct: 399 gttgtcgtggtcgtggtggt 380



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gttgtcgtggtcgtggtggt 334
           ||||||||||||||||||||
Sbjct: 333 gttgtcgtggtcgtggtggt 314



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gttgtcgtggtcgtggtggt 334
           ||||||||||||||||||||
Sbjct: 300 gttgtcgtggtcgtggtggt 281



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gttgtcgtggtcgtggtggt 334
           ||||||||||||||||||||
Sbjct: 204 gttgtcgtggtcgtggtggt 185
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>gb|L20809.1| Trypanosoma cruzi mucin-like protein gene, complete cds
          Length = 775

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gttgtcgtggtcgtggtggt 334
           ||||||||||||||||||||
Sbjct: 236 gttgtcgtggtcgtggtggt 217
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>gb|AC117686.10| Mus musculus chromosome 16, clone RP23-440B15, complete sequence
          Length = 210851

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  actcatgaaaacacattgaa 166
            ||||||||||||||||||||
Sbjct: 6051 actcatgaaaacacattgaa 6032
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>emb|AJ891031.1| Sus scrofa SP-C gene for surfactant protein C, exons 1-6
          Length = 2710

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 316 ttgtcgtggtcgtggtggtg 335
           ||||||||||||||||||||
Sbjct: 856 ttgtcgtggtcgtggtggtg 875
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>emb|AJ891124.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), short splice
           variant lacking exon 5
          Length = 688

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 316 ttgtcgtggtcgtggtggtg 335
           ||||||||||||||||||||
Sbjct: 116 ttgtcgtggtcgtggtggtg 135
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>emb|AJ891123.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), long variant
          Length = 867

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 316 ttgtcgtggtcgtggtggtg 335
           ||||||||||||||||||||
Sbjct: 180 ttgtcgtggtcgtggtggtg 199
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>gb|AC129601.4| Mus musculus BAC clone RP23-444N1 from chromosome 16, complete sequence
          Length = 173054

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    actcatgaaaacacattgaa 166
              ||||||||||||||||||||
Sbjct: 134936 actcatgaaaacacattgaa 134917
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>ref|XM_759090.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
          (TP04_0548) partial mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 75 tcattacaacgctgaagaagaaga 98
          |||||| |||||||||||||||||
Sbjct: 8  tcattaaaacgctgaagaagaaga 31
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>emb|AL359878.13| Human DNA sequence from clone RP11-363N22 on chromosome 10 Contains the
             5' end of gene KIAA0217, a novel gene, the 5' end of the
             gene for G protein-binding protein CRFG (NGB FLJ10686
             FLJ10690 FLJ39774) and four CpG islands, complete sequence
          Length = 184289

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   gaatgaataaattagggccg 183
             ||||||||||||||||||||
Sbjct: 94716 gaatgaataaattagggccg 94735
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>emb|AL163191.2|SPAC140 S.pombe chromosome I cosmid c140
          Length = 15326

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    gaagaagaagaatacaaggc 107
             ||||||||||||||||||||
Sbjct: 12297 gaagaagaagaatacaaggc 12278
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>gb|AC111099.15| Mus musculus chromosome 1, clone RP23-177A20, complete sequence
          Length = 195979

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 152   tgaaaacacattgaatgaataaat 175
             ||||||||||||||||||| ||||
Sbjct: 53339 tgaaaacacattgaatgaaaaaat 53316
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>gb|AC009349.6|AC009349 Drosophila melanogaster, chromosome 3R, region 100C-100C, BAC clone
             BACR10O09, complete sequence
          Length = 165555

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ttgaatgaataaattagggc 181
             ||||||||||||||||||||
Sbjct: 11693 ttgaatgaataaattagggc 11712
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>gb|AC008287.4|AC008287 Drosophila melanogaster, chromosome 3R, region 100C-100C, BAC clone
              BACR02G16, complete sequence
          Length = 177480

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    ttgaatgaataaattagggc 181
              ||||||||||||||||||||
Sbjct: 101623 ttgaatgaataaattagggc 101642
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>gb|AC012680.5|AC012680 Arabidopsis thaliana chromosome 1 BAC T11I11 genomic sequence, complete
             sequence
          Length = 69506

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 86    ctgaagaagaagaatacaaggcaa 109
             |||||||||||||| |||||||||
Sbjct: 16015 ctgaagaagaagaagacaaggcaa 16038
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>emb|AJ920269.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), allele 97
          Length = 772

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 316 ttgtcgtggtcgtggtggtg 335
           ||||||||||||||||||||
Sbjct: 116 ttgtcgtggtcgtggtggtg 135
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>emb|AJ920268.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), allele 92
          Length = 772

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 316 ttgtcgtggtcgtggtggtg 335
           ||||||||||||||||||||
Sbjct: 116 ttgtcgtggtcgtggtggtg 135
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>emb|AJ920267.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), allele 78
          Length = 784

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 316 ttgtcgtggtcgtggtggtg 335
           ||||||||||||||||||||
Sbjct: 116 ttgtcgtggtcgtggtggtg 135
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>emb|AJ920266.1| Sus scrofa mRNA for surfactant protein C (SP-C gene), allele 73
          Length = 781

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 316 ttgtcgtggtcgtggtggtg 335
           ||||||||||||||||||||
Sbjct: 116 ttgtcgtggtcgtggtggtg 135
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>gb|AE003778.3| Drosophila melanogaster chromosome 3R, section 116 of 118 of the
             complete sequence
          Length = 225974

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ttgaatgaataaattagggc 181
             ||||||||||||||||||||
Sbjct: 83890 ttgaatgaataaattagggc 83909
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>gb|U61533.1|TCU61533 Trypanosoma cruzi mucin-like protein (MUC.T0-1) gene, complete cds
          Length = 531

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gttgtcgtggtcgtggtggt 334
           ||||||||||||||||||||
Sbjct: 188 gttgtcgtggtcgtggtggt 169
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>gb|U32346.1|TCU32346 Trypanosoma cruzi mucin-like protein (muc.ca-2) gene, complete cds
          Length = 554

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gttgtcgtggtcgtggtggt 334
           ||||||||||||||||||||
Sbjct: 301 gttgtcgtggtcgtggtggt 282



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gttgtcgtggtcgtggtggt 334
           ||||||||||||||||||||
Sbjct: 268 gttgtcgtggtcgtggtggt 249



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gttgtcgtggtcgtggtggt 334
           ||||||||||||||||||||
Sbjct: 235 gttgtcgtggtcgtggtggt 216



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gttgtcgtggtcgtggtggt 334
           ||||||||||||||||||||
Sbjct: 202 gttgtcgtggtcgtggtggt 183
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>emb|AL355177.14| Mouse DNA sequence from clone RP21-61H21 on chromosome 5, complete
             sequence
          Length = 134781

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   tgaaactcatgaaaacacat 162
             ||||||||||||||||||||
Sbjct: 98404 tgaaactcatgaaaacacat 98385


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,728,263
Number of Sequences: 3902068
Number of extensions: 3728263
Number of successful extensions: 73722
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73569
Number of HSP's gapped (non-prelim): 153
length of query: 370
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 348
effective length of database: 17,147,199,772
effective search space: 5967225520656
effective search space used: 5967225520656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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