ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl43d11 |
|---|---|
| Clone Library Name | barley_pub |
>NU1M_PECMA (Q96186) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 354 Score = 30.4 bits (67), Expect = 1.0 Identities = 14/41 (34%), Positives = 26/41 (63%) Frame = -1 Query: 405 FFSFVLPIMPTLSRSQMPSFQGICLVSRVFCQRMMSLLVSC 283 FFSF++ + L RS P ++ L+ ++CQ ++ +L+SC Sbjct: 307 FFSFMVVFLIVLCRSSFPRYRYDMLMKLIWCQ-ILPILMSC 346
>GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 member A| precursor Length = 928 Score = 30.4 bits (67), Expect = 1.0 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 260 NQKPASWTHDTKRLIIL*QKTLETKQMPWNDGIWLLDNVGIIGSTKL 400 N A+WT+DT KT+ET ND +W G+I S +L Sbjct: 378 NYSQATWTYDTT-------KTIETHLFKRNDFLWHYTEPGLIHSIQL 417
>GAG_AVISN (P03342) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30] (Fragment) Length = 313 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +2 Query: 248 YTWMNQKPASWTHDTKRLIIL*QKTLETKQMPWND 352 Y W NQ P+S++ ++I L + T Q W+D Sbjct: 226 YNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDD 260
>BPAEA_MOUSE (Q91ZU8) Bullous pemphigoid antigen 1, isoform 5 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 2611 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +1 Query: 244 SLHMDEPETSFMDT*HQETHHPLTKNPGNQANALERRHLAPRQCWHYRQHKAE 402 S D S DT +E HHP +PGN + L + P W H+ E Sbjct: 1833 STTQDHTFASAFDTAGRECHHPAEISPGNSGH-LNLKTRLPLSRWTQEPHQTE 1884
>BPAEB_MOUSE (Q60824) Bullous pemphigoid antigen 1, isoforms 6/7 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragments) Length = 1678 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +1 Query: 244 SLHMDEPETSFMDT*HQETHHPLTKNPGNQANALERRHLAPRQCWHYRQHKAE 402 S D S DT +E HHP +PGN + L + P W H+ E Sbjct: 900 STTQDHTFASAFDTAGRECHHPAEISPGNSGH-LNLKTRLPLSRWTQEPHQTE 951
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 182 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 21 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 20 ICW 12 + + Sbjct: 3116 VMY 3118
>SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)| Length = 702 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -2 Query: 179 EYLSILVWN--FVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRH 33 EY + +V + FVC KS P C+ +GRA H VL+F SA RH Sbjct: 353 EYAAAVVASVRFVCDQKSVKHPVICSESGRAIVSH-HSVLIFEAVSAGKRH 402
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 182 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 21 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 20 ICW 12 + + Sbjct: 3116 VMY 3118
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 182 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 21 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 20 ICW 12 + + Sbjct: 3116 VMY 3118
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 182 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 21 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 20 ICW 12 + + Sbjct: 3116 VMY 3118
>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Fragment) Length = 340 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -1 Query: 162 GLEFCVRVEEFSFSQRVYWYWSSMLSTLSVCVVIP---GGV 49 G FC R + FSF + W S+++ L + + +P GGV Sbjct: 169 GTLFCCRRKFFSFLNWTLFIWGSLITALLLIITLPVLAGGV 209
>TYDP1_HUMAN (Q9NUW8) Tyrosyl-DNA phosphodiesterase 1 (EC 3.1.4.-) (Tyr-DNA| phosphodiesterase 1) Length = 608 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/69 (21%), Positives = 33/69 (47%) Frame = -2 Query: 299 VSWCHVSMKLVSGSSMCRLMVGWEEEGRQIKSYSRNMNFVEYLSILVWNFVCVWKSSLFP 120 +S C + + G+ ++M+ EEG ++ ++ N+ ++ +W S L+P Sbjct: 248 ISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQ----KTQGIWLSPLYP 303 Query: 119 RECTGTGRA 93 R GT ++ Sbjct: 304 RIADGTHKS 312
>FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1885 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +2 Query: 71 HTDNVDNMLDQYQYTLWEKENSST 142 + DNVD +L+QY+Y L+ + T Sbjct: 1614 NADNVDKLLEQYEYVLYPSRSIQT 1637
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 27.7 bits (60), Expect = 6.8 Identities = 8/17 (47%), Positives = 11/17 (64%) Frame = +2 Query: 236 PPSAYTWMNQKPASWTH 286 PPS++ W + P WTH Sbjct: 41 PPSSFGWSDPDPCKWTH 57
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 182 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 12 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3150 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3205
>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7124 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 182 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 12 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3096 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3151
>NU4M_CHLRE (P20113) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 443 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -1 Query: 405 FFSFVLPIMPTLSRSQMPSFQGICLVSRVF 316 F F+LP++P S P +CLVS +F Sbjct: 236 FLRFMLPVVPEFCVSVFPLVSTLCLVSFLF 265
>SFRP5_HUMAN (Q5T4F7) Secreted frizzled-related protein 5 precursor (sFRP-5)| (Secreted apoptosis-related protein 3) (SARP-3) (Frizzled-related protein 1b) (FRP-1b) Length = 317 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +2 Query: 98 DQYQYTLWEKENSSTRTQNSKPK*TDTPQSSCFCYMI*FGDLLLP--IPPSAYTWMNQKP 271 ++Y Y W+ E R+ + P+ D P C+ + + + LP + + + Q+ Sbjct: 30 EEYDYYGWQAEPLHGRSYSKPPQCLDIPADLPLCHTVGYKRMRLPNLLEHESLAEVKQQA 89 Query: 272 ASW 280 +SW Sbjct: 90 SSW 92
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 182 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 12 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3153 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3208
>SFRP5_BOVIN (Q9XSC1) Secreted frizzled-related protein 5 precursor (sFRP-5)| Length = 315 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +2 Query: 98 DQYQYTLWEKENSSTRTQNSKPK*TDTPQSSCFCYMI*FGDLLLP--IPPSAYTWMNQKP 271 ++Y Y W+ E R+ + P+ D P C+ + + + LP + + + Q+ Sbjct: 28 EEYDYYGWQTEPLHGRSYSKPPQCLDIPADLPLCHTVGYKRMRLPNLLEHESLAEVKQQA 87 Query: 272 ASW 280 +SW Sbjct: 88 SSW 90
>FGRL1_CHICK (Q7T2H2) Fibroblast growth factor receptor-like 1 precursor| Length = 487 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = +1 Query: 31 PCRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTKFQTKIDRYSTKFMFLLYDL 210 P T D G T QC + PV KR + T +K+ + ID KF+ L Sbjct: 247 PVNTTVDYGGT--TSFQCKVRSDVKPVIQWLKRVEYGTESKYNSTIDVGGQKFVVLPTGE 304 Query: 211 IW-RPSSSH 234 +W RP S+ Sbjct: 305 VWSRPDGSY 313
>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| Length = 493 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/77 (27%), Positives = 31/77 (40%) Frame = +1 Query: 22 YHFPCRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTKFQTKIDRYSTKFMFLL 201 Y F C +S G N H V HS+ K L + H + +DRY + LL Sbjct: 59 YQFTCLTYKESEGALNEHMTSLASVLKVS-HSVAKLILVNFHWQVSEILDRYKSNSAQLL 117 Query: 202 YDLIWRPSSSHPTISLH 252 + +P+ S + H Sbjct: 118 VEARVQPNPSKHVPTSH 134
>NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protein 2B| (Sodium/phosphate cotransporter 2B) (Na(+)/Pi cotransporter 2B) (Sodium-phosphate transport protein 2B) (Na(+)-dependent phosphate cotransporter 2B) (NaPi-2b) (Solute carrier family 34 Length = 697 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%) Frame = -2 Query: 173 LSILVWNFVCVWKSSL-------------FPRECTGTGRACCQHCLCV 69 L + WNF+ +W SL F R C R CC+ C V Sbjct: 585 LKLRDWNFLPLWMHSLKPWDNVISLATTCFQRRCCCCCRVCCRVCCMV 632
>LEU2_SYNP6 (Q5MZY3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 468 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -2 Query: 266 SGSSMCRLMVGWEEEGRQIKSYSRNMNF 183 +G SMC M + EGRQI + S N NF Sbjct: 405 AGCSMCLAMNPDKLEGRQISASSSNRNF 432
>GALC_HUMAN (P54803) Galactocerebrosidase precursor (EC 3.2.1.46) (GALCERase)| (Galactosylceramidase) (Galactosylceramide beta-galactosidase) (Galactocerebroside beta-galactosidase) Length = 669 Score = 27.3 bits (59), Expect = 8.8 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +1 Query: 160 TKIDRYSTKFMFLLYDLIW-RPSSSHPTISLHMDEPETSFMDT*HQETHHPL 312 TK+ + S +F+F D +W S T+SLH DE T T ++ +PL Sbjct: 412 TKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPL 463
>NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein 2B| (Sodium/phosphate cotransporter 2B) (Na(+)/Pi cotransporter 2B) (Sodium-phosphate transport protein 2B) (Na(+)-dependent phosphate cotransporter 2B) (NaPi-2b) (Solute carrier family 34 me Length = 695 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%) Frame = -2 Query: 173 LSILVWNFVCVWKSSL-------------FPRECTGTGRACCQHCLCV 69 L + WNF+ +W SL F R C R CC+ C V Sbjct: 585 LKLRDWNFLPLWMHSLKPWDNIISLATSCFQRRCCCCCRVCCRVCCMV 632 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,253,519 Number of Sequences: 219361 Number of extensions: 1473493 Number of successful extensions: 3910 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3753 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3907 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
