ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl43d10 |
|---|---|
| Clone Library Name | barley_pub |
>PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD| delta) Length = 868 Score = 67.8 bits (164), Expect = 6e-12 Identities = 31/47 (65%), Positives = 40/47 (85%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPT-SLPDSLT 259 LQGHL++YP++V+ DGK+ PLPD E FPDVGGKI GA + +LPD+LT Sbjct: 821 LQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLT 867
>PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta| 1) (PLDbeta) Length = 967 Score = 56.6 bits (135), Expect = 1e-08 Identities = 24/47 (51%), Positives = 35/47 (74%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLTM 256 ++GHLL+YPV+V+ GK+ PLP E FPDVGG I G ++ ++LT+ Sbjct: 921 MRGHLLKYPVEVDRKGKVRPLPGSETFPDVGGNIVGTFIAIQENLTI 967
>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta| 2) (PLDdelta1) Length = 915 Score = 54.7 bits (130), Expect = 5e-08 Identities = 22/47 (46%), Positives = 36/47 (76%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLTM 256 ++GHL++YPV+V+ GK+ PLP E FPDVGG + G+ ++ ++LT+ Sbjct: 869 MRGHLMKYPVEVDRKGKVRPLPGSEEFPDVGGNVVGSFLAIQENLTI 915
>PLDG2_ARATH (Q9T051) Phospholipase D gamma 2 (EC 3.1.4.4) (AtPLDgamma2) (PLD| gamma 2) Length = 824 Score = 54.7 bits (130), Expect = 5e-08 Identities = 24/47 (51%), Positives = 35/47 (74%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLTM 256 + GHLL+YPV+V+ GK+ LP E FPD+GGKI G+ +L ++LT+ Sbjct: 778 MSGHLLKYPVQVDKTGKVSSLPGCETFPDLGGKIIGSFLTLQENLTI 824
>PLDG1_ARATH (Q9T053) Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLDgamma1) (PLD| gamma 1) (Choline phosphatase) (Lipophosphodiesterase II) (Lecithinase D) Length = 858 Score = 54.3 bits (129), Expect = 7e-08 Identities = 24/47 (51%), Positives = 35/47 (74%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLTM 256 + GHLL+YPV+V+ GK+ LP E FPD+GGKI G+ +L ++LT+ Sbjct: 812 MSGHLLKYPVQVDRTGKVSSLPGCETFPDLGGKIIGSFLALQENLTI 858
>PLDG3_ARATH (Q9T052) Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLDgamma3) (PLD| gamma 3) Length = 866 Score = 52.4 bits (124), Expect = 3e-07 Identities = 23/47 (48%), Positives = 34/47 (72%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLTM 256 + GHLL+YPV+V+ GK+ LP E FPD+GGKI G+ + ++LT+ Sbjct: 820 MPGHLLKYPVQVDRTGKVSSLPGYETFPDLGGKIIGSFLVVEENLTI 866
>PLDA1_PIMBR (O04883) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 45.4 bits (106), Expect = 3e-05 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLT 259 L GHLLRYP+ V +G + LP E FPD ++ GA + LP LT Sbjct: 761 LPGHLLRYPIAVASEGNVTELPGTEFFPDTKARVLGAKSDFLPPILT 807
>PLDA1_RICCO (Q41142) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 44.7 bits (104), Expect = 5e-05 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLT 259 L GHLLRYP+ V +G + LP E FPD ++ GA + LP LT Sbjct: 761 LPGHLLRYPIGVASEGDVTELPGTEFFPDTKARVLGAKSDYLPPILT 807
>PLDA1_VIGUN (O04865) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 809 Score = 44.7 bits (104), Expect = 5e-05 Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLT 259 L GHLLRYP+ V +G++ LP E FPD +I GA LP LT Sbjct: 762 LPGHLLRYPIGVASEGEVTELPGFEFFPDTKARILGAKADYLPPILT 808
>PLDA2_ORYSA (P93844) Phospholipase D alpha 2 (EC 3.1.4.4) (PLD alpha 2)| (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) Length = 818 Score = 43.9 bits (102), Expect = 9e-05 Identities = 20/46 (43%), Positives = 26/46 (56%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLT 259 L GHLL YPV+V +G + LP + FPD + G +LP LT Sbjct: 772 LPGHLLTYPVRVTKEGTVTELPGAKFFPDTQAPVIGTKGNLPPFLT 817
>PLDA1_ARATH (Q38882) Phospholipase D alpha 1 (EC 3.1.4.4) (AtPLDalpha1) (PLD| alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) (PLDalpha) Length = 810 Score = 43.1 bits (100), Expect = 2e-04 Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLT 259 L GHLLRYP+ V +G I LP E FPD +I G + LP LT Sbjct: 763 LPGHLLRYPIGVASEGDITELPGFEFFPDTKARILGTKSDYLPPILT 809
>PLDA2_BRAOC (P55939) Phospholipase D alpha 2 precursor (EC 3.1.4.4) (PLD 2)| (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) Length = 812 Score = 43.1 bits (100), Expect = 2e-04 Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLT 259 L GHLLRYP+ V+ +G I LP E FPD +I G LP LT Sbjct: 765 LPGHLLRYPISVDNEGNITELPGFEFFPDSKARILGNKVDYLPPILT 811
>PLDA1_ORYSA (Q43007) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha| 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 812 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLT 259 L GHLL YP+ V DG + LP E FPD ++ GA + +P LT Sbjct: 765 LPGHLLSYPIGVASDGVVTELPGMEYFPDTRARVLGAKSDYMPPILT 811
>PLDA1_TOBAC (P93400) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLT 259 L GHLLRYP+ V +G + LP E FPD ++ G + LP LT Sbjct: 761 LPGHLLRYPIGVASEGDVTELPGAEHFPDTKARVLGTKSDYLPPILT 807
>PLDA1_BRAOC (O82549) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 810 Score = 42.7 bits (99), Expect = 2e-04 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLT 259 L GHLLRYPV V+ +G + P E FPD +I G + LP LT Sbjct: 763 LPGHLLRYPVDVDGEGDVTEFPGFEFFPDTKARILGTKSDYLPPILT 809
>PLDA2_ARATH (Q9SSQ9) Phospholipase D alpha 2 (EC 3.1.4.4) (AtPLDalpha2) (PLD| alpha 2) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) Length = 810 Score = 42.4 bits (98), Expect = 3e-04 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLT 259 L GHLLRYP+ + +G I LP E FPD +I G + +P LT Sbjct: 763 LPGHLLRYPIGIASEGNITELPGCEFFPDTKARILGVKSDYMPPILT 809
>PLDA1_MAIZE (Q43270) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 812 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLT 259 L GHLL YP+ V DG + LP E FPD ++ G + LP LT Sbjct: 765 LPGHLLSYPIGVTADGSVTELPGMENFPDTRARVLGNKSDYLPPILT 811
>PLDZ1_ARATH (P58766) Phospholipase D zeta (EC 3.1.4.4) (AtPLDzeta) (PLD zeta)| Length = 820 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -1 Query: 396 LQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLT 259 L GHLL YP+ + +G++ L E FPD K+ G ++ LP LT Sbjct: 773 LPGHLLSYPISIGSNGEVTNLAGTEFFPDTNAKVVGEKSNYLPPILT 819
>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)| Length = 1235 Score = 33.9 bits (76), Expect = 0.095 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -1 Query: 378 RYPVKVEPDGKIVPLPDQECFPDVGGKICGA 286 R+P +V+P+G ++ P C PD+GG C + Sbjct: 648 RHPQRVDPNGYMMMSPSGSCSPDIGGGSCSS 678
>A2AP_BOVIN (P28800) Alpha-2-antiplasmin precursor (Alpha-2-plasmin inhibitor)| (Alpha-2-PI) (Alpha-2-AP) Length = 492 Score = 33.5 bits (75), Expect = 0.12 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Frame = +1 Query: 4 MSKLSIDPVLSHVQT-VEKKILQRRTTLQHTVNSPCFPYTPHNV*STDYGAGYHHPLARQ 180 +S LS+ LSH+ + + LQR + H + PC P+ + D G G AR Sbjct: 109 LSPLSVALALSHLALGAQNQTLQRLKEVLHADSGPCLPHLLSRL-CQDLGPGAFRLAARM 167 Query: 181 DIQRGFT-----GEQNNQLGL*REVSTVTSHRQRIRKRGRGAADLATDVGEAFLVGQRDD 345 +Q+GF EQ+ QL + +S + + R + E FL DD Sbjct: 168 YLQKGFPIKEDFLEQSEQLFGAKPMSLTGMKGEDLANINRWVKEATEGKIEDFLSDLPDD 227 Query: 346 LTIRL 360 + L Sbjct: 228 TVLLL 232
>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)| Length = 1233 Score = 31.6 bits (70), Expect = 0.47 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -1 Query: 378 RYPVKVEPDGKIVPLPDQECFPDVGG 301 R+P +V+P+G ++ P C PD+GG Sbjct: 648 RHPQRVDPNGYMMMSPSGSCSPDIGG 673
>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)| Length = 1242 Score = 31.6 bits (70), Expect = 0.47 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -1 Query: 378 RYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLTM*RHGTDF 235 R+P +V+P+G ++ P C PD+G G P+S S GT + Sbjct: 652 RHPQRVDPNGYMMMSPSGGCSPDIG----GGPSSSSSSSNAVPSGTSY 695
>RL33_AQUAE (O67756) 50S ribosomal protein L33| Length = 50 Score = 31.2 bits (69), Expect = 0.62 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +3 Query: 33 VSCTDCRKKNLTKAHNSTTHREQPVLSLYATQC---VIHR 143 ++CT+C+++N T N H E+ L Y C IHR Sbjct: 8 LACTECKRRNYTTTKNKQKHPERLELRKYCKWCRKHTIHR 47
>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)| Length = 1251 Score = 30.8 bits (68), Expect = 0.81 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -1 Query: 378 RYPVKVEPDGKIVPLPDQECFPDVGG 301 R+P +V+P+G ++ P C PD+GG Sbjct: 652 RHPQRVDPNGYMMMSPSGGCSPDIGG 677
>PLDE1_ARATH (Q9C888) Phospholipase D epsilon (EC 3.1.4.4) (AtPLDepsilon) (PLD| epsilon) (PLDalpha3) Length = 762 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = -1 Query: 399 MLQGHLLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSL-PDSLT 259 ML HL+ YP+ V DG + + D CFPD + G + + P LT Sbjct: 715 MLGIHLVAYPISVTGDGAVEEVGD-GCFPDTKTLVKGKRSKMFPPVLT 761
>MMHB_AGKHA (Q9YI92) Mamushigin beta chain precursor| Length = 146 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%) Frame = -3 Query: 190 SECLVLPTDDDNLHRNLWIT--HCVAYRE------STGCSRCVVELCAF 68 +EC+V TD L N WIT C+A + S CSR +C F Sbjct: 96 NECMVEWTDGTRLSHNAWITESECIAAKTTDNQWLSRPCSRTYNVVCKF 144
>ZAN_MOUSE (O88799) Zonadhesin precursor| Length = 5376 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%) Frame = -2 Query: 239 TSLQSPSWLFCS---PVKPL*MSCL 174 T+LQ P+W CS P+KP + C+ Sbjct: 2272 TALQGPAWAHCSSRVPIKPFLLKCM 2296
>RPOA_PRRS1 (Q9YN02) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3966 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -1 Query: 372 PVKVEPDGKIVPLPDQECFPDVGGKICGAPTSL 274 PVK P+ K VP P ++ PD CG+P SL Sbjct: 826 PVKSLPERKPVPAPRRKVGPD-----CGSPVSL 853
>APEB_PSEPK (Q88M44) Probable M18-family aminopeptidase 2 (EC 3.4.11.-)| Length = 429 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -1 Query: 240 DFSSESKLVILLSCKTSLNVLSCQRMMITCTVICGSH 130 DF + ++L LLSC L L TC ++C H Sbjct: 228 DFIAGARLDNLLSCYAGLQALLAADSDETCVLVCNDH 264
>LACY_STRTR (P23936) Lactose permease (Lactose-proton symporter) (Lactose| transport protein) [Includes: Putative phosphotransferase enzyme IIA component (EC 2.7.1.-) (Putative PTS system EIIA component)] Length = 634 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +1 Query: 241 STVTSHRQRIRKRGRGAADLATDVGEAFLVGQRDDLT 351 ST+T+H+Q I K G A AT + AF+V ++ LT Sbjct: 417 STITTHQQFIFKLGMFAFPAATMLIGAFIVARKITLT 453
>YAOH_SCHPO (Q10096) Hypothetical zinc finger protein C11D3.17 in chromosome I| Length = 585 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = +3 Query: 24 PCPVSCTDCRKKNLTKAHNSTTHREQPVL 110 PCP C++K+L K H H ++ V+ Sbjct: 60 PCPYCEIKCKRKDLLKRHIQRFHNDKSVI 88
>INV2_DAUCA (Q39692) Beta-fructofuranosidase, insoluble isoenzyme 2 precursor| (EC 3.2.1.26) (Sucrose hydrolase 2) (Invertase 2) (Cell wall beta-fructosidase 2) Length = 592 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 5/41 (12%) Frame = +2 Query: 290 PQILP--PTSGKHSWSGSGTILPSGS---TFTGYLRRCPCN 397 P I P P WSGS T+LP G +TG + P N Sbjct: 120 PAIFPSKPFDKYGCWSGSATVLPGGKPVIMYTGIVTPSPVN 160
>YIL7_YEAST (P40476) Hypothetical 34.7 kDa protein in RHO3-HIS5 intergenic| region Length = 318 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +2 Query: 206 SKITSLDSEEKSVP*RHIVSESGSEVGAPQILPPTSGKHSWSGSGTILPSGSTF 367 S ITS+ S S+P ++S S S P I PP+ + + +P+G+ F Sbjct: 28 STITSVASSSSSLP---LLSNSTSSSIIPSITPPSRNGNPYILDSGDMPNGTVF 78
>JAG1B_BRARE (Q90Y54) Jagged-1b precursor (Jagged1b) (Jagged3)| Length = 1213 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -1 Query: 186 NVLSCQRMMITCTVICGSHIVWRIGKARAVHGVL*SCAPL 67 N+ CQ I CT++ RIGKAR SC P+ Sbjct: 878 NICQCQNGRIHCTMMWCGPKSCRIGKARGGCPASQSCVPI 917
>CD2AP_HUMAN (Q9Y5K6) CD2-associated protein (Cas ligand with multiple SH3| domains) (Adapter protein CMS) Length = 639 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Frame = +2 Query: 194 VLQESKITSLDSEEKSVP*RHIVSESGSEVGAPQI-----LPPTSGKHSWSGSGTILP 352 + E K SL EEK + + + S+ APQ+ PPT + SGT+ P Sbjct: 355 IAAEKKYFSLKPEEKDE--KSTLEQKPSKPAAPQVPPKKPTPPTKASNLLRSSGTVYP 410
>ROR2_MOUSE (Q9Z138) Tyrosine-protein kinase transmembrane receptor ROR2| precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase, receptor-related 2) (mROR2) Length = 944 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +2 Query: 290 PQILPPTSGKHSWSGSGTILPSGSTFTGYLRRCPCN 397 PQ++P S HS SGS T TGY+ P N Sbjct: 853 PQMVPKPSSHHSGSGS--------TSTGYVTTAPSN 880
>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +2 Query: 224 DSEE-KSVP*RHIVSESGSEVGAPQILPPTSGKHSWSGSGTILPSGSTF 367 D+EE K + RH+V+E+G+ P I PT+ G+ + +G + Sbjct: 95 DTEEAKKLAQRHLVAETGTAEKMPNISRPTAPPSGKGGNFPVQQAGGNY 143
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +2 Query: 224 DSEE-KSVP*RHIVSESGSEVGAPQILPPTSGKHSWSGSGTILPSGSTF 367 D+EE K + RH+V+E+G+ P I PT+ G+ + +G + Sbjct: 95 DTEEAKKLAQRHLVAETGTAEKMPNISRPTAPPSGKGGNFPVQQAGGNY 143
>ROR2_HUMAN (Q01974) Tyrosine-protein kinase transmembrane receptor ROR2| precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase, receptor-related 2) Length = 943 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +2 Query: 290 PQILPPTSGKHSWSGSGTILPSGSTFTGYLRRCPCN 397 PQ++P S HS SGS T TGY+ P N Sbjct: 853 PQMVPKPSSHHSGSGS--------TSTGYVTTAPSN 880
>CDON_MOUSE (Q32MD9) Cell adhesion molecule-related/down-regulated by oncogenes| precursor Length = 1250 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = -1 Query: 375 YPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLTM 256 +PVKV P G +P PD + T +PD+ + Sbjct: 553 FPVKVHPSGVELPAEKNASVPDAPNILSPPQTHMPDTYNL 592 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,480,856 Number of Sequences: 219361 Number of extensions: 1270401 Number of successful extensions: 3741 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 3614 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3738 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
