Clone Name | rbastl43d05 |
---|---|
Clone Library Name | barley_pub |
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 328 tgctcactctttgcttgtcccgagggccagggatttcagttctggcatcagcctctc 384 |||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||| Sbjct: 106758 tgctcattctttgcttgtgcccaggaccagggatttcagttctggcatcagcctctc 106702
>dbj|AK106889.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G03, full insert sequence Length = 1868 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 328 tgctcactctttgcttgtcccgagggccagggatttcagttctg 371 |||||| ||||||||||| || ||| |||||||||||||||||| Sbjct: 1573 tgctcattctttgcttgtgcccaggaccagggatttcagttctg 1530
>emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on chromosome 6q12, complete sequence Length = 158204 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 40 aaaaattaagttgattctgttg 61 |||||||||||||||||||||| Sbjct: 88954 aaaaattaagttgattctgttg 88975
>gb|AC148824.5| Pan troglodytes BAC clone CH251-507H8 from chromosome 7, complete sequence Length = 189932 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 tcagttctggcatcagcctct 383 ||||||||||||||||||||| Sbjct: 47347 tcagttctggcatcagcctct 47367
>gb|AC145285.2| Homo sapiens chromosome 16 clone RP11-1348G14, complete sequence Length = 219165 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 tcagttctggcatcagcctct 383 ||||||||||||||||||||| Sbjct: 46637 tcagttctggcatcagcctct 46657
>gb|AC138824.2| Homo sapiens chromosome 16 clone RP11-1119F12, complete sequence Length = 134444 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 tcagttctggcatcagcctct 383 ||||||||||||||||||||| Sbjct: 21217 tcagttctggcatcagcctct 21237
>gb|AC112166.3| Homo sapiens chromosome 16 clone CTB-134H23, complete sequence Length = 131839 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 tcagttctggcatcagcctct 383 ||||||||||||||||||||| Sbjct: 51787 tcagttctggcatcagcctct 51767
>gb|AC009153.10| Homo sapiens chromosome 16 clone RP11-572F4, complete sequence Length = 177479 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 tcagttctggcatcagcctct 383 ||||||||||||||||||||| Sbjct: 165057 tcagttctggcatcagcctct 165037
>gb|AC009053.7| Homo sapiens chromosome 16 clone RP11-252A24, complete sequence Length = 163427 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 tcagttctggcatcagcctct 383 ||||||||||||||||||||| Sbjct: 76078 tcagttctggcatcagcctct 76058
>gb|AC133555.3| Homo sapiens chromosome 16 clone RP11-345J4, complete sequence Length = 200812 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 tcagttctggcatcagcctct 383 ||||||||||||||||||||| Sbjct: 143248 tcagttctggcatcagcctct 143268
>gb|AC020765.8| Homo sapiens chromosome 16 clone RP11-666O2, complete sequence Length = 195588 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 tcagttctggcatcagcctct 383 ||||||||||||||||||||| Sbjct: 193328 tcagttctggcatcagcctct 193348
>gb|AC025279.6| Homo sapiens chromosome 16 clone RP11-231C14, complete sequence Length = 171940 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 tcagttctggcatcagcctct 383 ||||||||||||||||||||| Sbjct: 124827 tcagttctggcatcagcctct 124807
>gb|AC133912.3| Homo sapiens chromosome 16 clone CTC-506N3, complete sequence Length = 128703 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 tcagttctggcatcagcctct 383 ||||||||||||||||||||| Sbjct: 44737 tcagttctggcatcagcctct 44757
>emb|AL445590.4| Human DNA sequence from clone RP11-50D16 on chromosome 13 Contains the gene for a novel protein similar to stomatin peptide, gene FLJ12661 (FLJ23780), a novel gene, and two CpG islands, complete sequence Length = 157957 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 tgtttgatgctcactctttg 340 |||||||||||||||||||| Sbjct: 28972 tgtttgatgctcactctttg 28953
>gb|AC108720.3| Homo sapiens 12 BAC RP11-251C23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 86966 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaaattaagttgattctgtt 60 |||||||||||||||||||| Sbjct: 7856 aaaattaagttgattctgtt 7875
>emb|AL627405.17| Mouse DNA sequence from clone RP23-183D11 on chromosome 4, complete sequence Length = 193847 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 ctgttgtcacacaaacccta 75 |||||||||||||||||||| Sbjct: 83773 ctgttgtcacacaaacccta 83754 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,005,533 Number of Sequences: 3902068 Number of extensions: 3005533 Number of successful extensions: 48602 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48578 Number of HSP's gapped (non-prelim): 24 length of query: 384 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 362 effective length of database: 17,147,199,772 effective search space: 6207286317464 effective search space used: 6207286317464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)