ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
2dbj|AK106889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
3emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on ... 44 0.33
4gb|AC148824.5| Pan troglodytes BAC clone CH251-507H8 from chromo... 42 1.3
5gb|AC145285.2| Homo sapiens chromosome 16 clone RP11-1348G14, co... 42 1.3
6gb|AC138824.2| Homo sapiens chromosome 16 clone RP11-1119F12, co... 42 1.3
7gb|AC112166.3| Homo sapiens chromosome 16 clone CTB-134H23, comp... 42 1.3
8gb|AC009153.10| Homo sapiens chromosome 16 clone RP11-572F4, com... 42 1.3
9gb|AC009053.7| Homo sapiens chromosome 16 clone RP11-252A24, com... 42 1.3
10gb|AC133555.3| Homo sapiens chromosome 16 clone RP11-345J4, comp... 42 1.3
11gb|AC020765.8| Homo sapiens chromosome 16 clone RP11-666O2, comp... 42 1.3
12gb|AC025279.6| Homo sapiens chromosome 16 clone RP11-231C14, com... 42 1.3
13gb|AC133912.3| Homo sapiens chromosome 16 clone CTC-506N3, compl... 42 1.3
14emb|AL445590.4| Human DNA sequence from clone RP11-50D16 on chro... 40 5.1
15gb|AC108720.3| Homo sapiens 12 BAC RP11-251C23 (Roswell Park Can... 40 5.1
16emb|AL627405.17| Mouse DNA sequence from clone RP23-183D11 on ch... 40 5.1

>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07,
              complete sequence
          Length = 164477

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                       
Query: 328    tgctcactctttgcttgtcccgagggccagggatttcagttctggcatcagcctctc 384
              |||||| ||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct: 106758 tgctcattctttgcttgtgcccaggaccagggatttcagttctggcatcagcctctc 106702



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>dbj|AK106889.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G03, full
            insert sequence
          Length = 1868

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 328  tgctcactctttgcttgtcccgagggccagggatttcagttctg 371
            |||||| ||||||||||| || ||| ||||||||||||||||||
Sbjct: 1573 tgctcattctttgcttgtgcccaggaccagggatttcagttctg 1530



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>emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on chromosome 6q12, complete
             sequence
          Length = 158204

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 40    aaaaattaagttgattctgttg 61
             ||||||||||||||||||||||
Sbjct: 88954 aaaaattaagttgattctgttg 88975



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>gb|AC148824.5| Pan troglodytes BAC clone CH251-507H8 from chromosome 7, complete
             sequence
          Length = 189932

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 363   tcagttctggcatcagcctct 383
             |||||||||||||||||||||
Sbjct: 47347 tcagttctggcatcagcctct 47367



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>gb|AC145285.2| Homo sapiens chromosome 16 clone RP11-1348G14, complete sequence
          Length = 219165

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 363   tcagttctggcatcagcctct 383
             |||||||||||||||||||||
Sbjct: 46637 tcagttctggcatcagcctct 46657



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>gb|AC138824.2| Homo sapiens chromosome 16 clone RP11-1119F12, complete sequence
          Length = 134444

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 363   tcagttctggcatcagcctct 383
             |||||||||||||||||||||
Sbjct: 21217 tcagttctggcatcagcctct 21237



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>gb|AC112166.3| Homo sapiens chromosome 16 clone CTB-134H23, complete sequence
          Length = 131839

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 363   tcagttctggcatcagcctct 383
             |||||||||||||||||||||
Sbjct: 51787 tcagttctggcatcagcctct 51767



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>gb|AC009153.10| Homo sapiens chromosome 16 clone RP11-572F4, complete sequence
          Length = 177479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 363    tcagttctggcatcagcctct 383
              |||||||||||||||||||||
Sbjct: 165057 tcagttctggcatcagcctct 165037



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>gb|AC009053.7| Homo sapiens chromosome 16 clone RP11-252A24, complete sequence
          Length = 163427

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 363   tcagttctggcatcagcctct 383
             |||||||||||||||||||||
Sbjct: 76078 tcagttctggcatcagcctct 76058



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>gb|AC133555.3| Homo sapiens chromosome 16 clone RP11-345J4, complete sequence
          Length = 200812

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 363    tcagttctggcatcagcctct 383
              |||||||||||||||||||||
Sbjct: 143248 tcagttctggcatcagcctct 143268



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>gb|AC020765.8| Homo sapiens chromosome 16 clone RP11-666O2, complete sequence
          Length = 195588

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 363    tcagttctggcatcagcctct 383
              |||||||||||||||||||||
Sbjct: 193328 tcagttctggcatcagcctct 193348



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>gb|AC025279.6| Homo sapiens chromosome 16 clone RP11-231C14, complete sequence
          Length = 171940

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 363    tcagttctggcatcagcctct 383
              |||||||||||||||||||||
Sbjct: 124827 tcagttctggcatcagcctct 124807



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>gb|AC133912.3| Homo sapiens chromosome 16 clone CTC-506N3, complete sequence
          Length = 128703

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 363   tcagttctggcatcagcctct 383
             |||||||||||||||||||||
Sbjct: 44737 tcagttctggcatcagcctct 44757



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>emb|AL445590.4| Human DNA sequence from clone RP11-50D16 on chromosome 13 Contains the
             gene for a novel protein similar to stomatin peptide, gene
             FLJ12661 (FLJ23780), a novel gene, and two CpG islands,
             complete sequence
          Length = 157957

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   tgtttgatgctcactctttg 340
             ||||||||||||||||||||
Sbjct: 28972 tgtttgatgctcactctttg 28953



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>gb|AC108720.3| Homo sapiens 12 BAC RP11-251C23 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 86966

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   aaaattaagttgattctgtt 60
            ||||||||||||||||||||
Sbjct: 7856 aaaattaagttgattctgtt 7875



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>emb|AL627405.17| Mouse DNA sequence from clone RP23-183D11 on chromosome 4, complete
             sequence
          Length = 193847

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ctgttgtcacacaaacccta 75
             ||||||||||||||||||||
Sbjct: 83773 ctgttgtcacacaaacccta 83754


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,005,533
Number of Sequences: 3902068
Number of extensions: 3005533
Number of successful extensions: 48602
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48578
Number of HSP's gapped (non-prelim): 24
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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