ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC147570.3| Homo sapiens BAC clone RP11-1176F21 from UL, comp... 44 0.32
2gb|AC004527.2|AC004527 Homo sapiens chromosome 21, Neurofibromat... 44 0.32
3dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 44 0.32
4gb|AY898799.1| Homo sapiens NF1-ch21 pseudogene, complete sequence 44 0.32
5gb|AY898798.1| Homo sapiens NF1-ch18 pseudogene, complete sequence 44 0.32
6dbj|AP001634.1| Homo sapiens genomic DNA, chromosome 21q11.1 clo... 44 0.32
7dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 44 0.32
8gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
9gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
11gb|AC007218.6| Homo sapiens chromosome 16 clone RP11-297M9, comp... 42 1.3
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
13gb|AY771996.1| Homo sapiens interleukin 12 receptor, beta 1 (IL1... 40 5.0
14gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, co... 40 5.0
15gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosom... 40 5.0
16gb|AC004079.1| Homo sapiens PAC clone RP1-167F23 from 7, complet... 40 5.0
17gb|AC146102.2| Pan troglodytes BAC clone RP43-21L13 from 7, comp... 40 5.0
18gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosom... 40 5.0
19gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome... 40 5.0
20gb|AC006337.5| Homo sapiens BAC clone RP11-535N23 from 7, comple... 40 5.0
21gb|AC145985.2| Pan troglodytes BAC clone RP43-17I24 from 7, comp... 40 5.0
22gb|AC142285.1| Pan troglodytes BAC clone RP43-169B4 from 7, comp... 40 5.0
23emb|AL589908.4| Human DNA sequence from clone RP11-258M3 on chro... 40 5.0
24emb|AL117382.28|HSJ881L22 Human DNA sequence from clone RP5-881L... 40 5.0
25emb|AL121919.20|HSJ492J12 Human DNA sequence from clone RP3-492J... 40 5.0
26gb|AC124157.4| Equus caballus clone CH241-37P10, complete sequence 40 5.0
27gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, comple... 40 5.0
28gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, compl... 40 5.0
29dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 5.0
30gb|AC011835.8| Homo sapiens chromosome 8, clone RP11-143D15, com... 40 5.0
31gb|AC016065.14| Homo sapiens chromosome 8, clone RP11-115C21, co... 40 5.0
32gb|AC177809.2| Pan troglodytes BAC clone CH251-550E5 from chromo... 40 5.0
33gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, comple... 40 5.0
34gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosom... 40 5.0
35emb|BX294126.10| Zebrafish DNA sequence from clone DKEYP-35B8 in... 40 5.0
36emb|BX470215.5| Mouse DNA sequence from clone RP24-558L5 on chro... 40 5.0
37gb|AF005550.1|AF005550 Tetrahymena thermophila programmed DNA de... 40 5.0
38gb|AC130533.2| Mus musculus BAC clone RP23-211B19 from 8, comple... 40 5.0
39gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, c... 40 5.0
40gb|DP000020.1| Equus caballus target 1 genomic scaffold 40 5.0
41emb|AL772387.13| Mouse DNA sequence from clone RP23-133B16 on ch... 40 5.0
42emb|AL669952.8| Mouse DNA sequence from clone RP23-154A15 on chr... 40 5.0 
>gb|AC147570.3| Homo sapiens BAC clone RP11-1176F21 from UL, complete sequence
          Length = 191237

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 69   cacaccaaaaacaaactgatag 90
            ||||||||||||||||||||||
Sbjct: 2226 cacaccaaaaacaaactgatag 2247
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>gb|AC004527.2|AC004527 Homo sapiens chromosome 21, Neurofibromatosis 1 (NF1) related locus,
             complete sequence
          Length = 131971

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 69    cacaccaaaaacaaactgatag 90
             ||||||||||||||||||||||
Sbjct: 94121 cacaccaaaaacaaactgatag 94100
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>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 69    cacaccaaaaacaaactgatag 90
             ||||||||||||||||||||||
Sbjct: 17742 cacaccaaaaacaaactgatag 17721
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>gb|AY898799.1| Homo sapiens NF1-ch21 pseudogene, complete sequence
          Length = 10837

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 69   cacaccaaaaacaaactgatag 90
            ||||||||||||||||||||||
Sbjct: 2583 cacaccaaaaacaaactgatag 2562
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>gb|AY898798.1| Homo sapiens NF1-ch18 pseudogene, complete sequence
          Length = 10834

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 69   cacaccaaaaacaaactgatag 90
            ||||||||||||||||||||||
Sbjct: 2577 cacaccaaaaacaaactgatag 2556
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>dbj|AP001634.1| Homo sapiens genomic DNA, chromosome 21q11.1 clone:B585O4, D21S290-LL56
             region, complete sequence
          Length = 71829

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 69    cacaccaaaaacaaactgatag 90
             ||||||||||||||||||||||
Sbjct: 33976 cacaccaaaaacaaactgatag 33955
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>dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681B3, complete
             sequence
          Length = 182424

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 69    cacaccaaaaacaaactgatag 90
             ||||||||||||||||||||||
Sbjct: 97775 cacaccaaaaacaaactgatag 97796
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>gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0313E01,
              complete sequence
          Length = 149215

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      atctcaaaacaaattaaaatt 21
              |||||||||||||||||||||
Sbjct: 100247 atctcaaaacaaattaaaatt 100267
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>gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0051D10, complete sequence
          Length = 140272

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      atctcaaaacaaattaaaatt 21
              |||||||||||||||||||||
Sbjct: 120765 atctcaaaacaaattaaaatt 120745
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 1        atctcaaaacaaattaaaatt 21
                |||||||||||||||||||||
Sbjct: 25224977 atctcaaaacaaattaaaatt 25224997
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>gb|AC007218.6| Homo sapiens chromosome 16 clone RP11-297M9, complete sequence
          Length = 193220

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     atctcaaaacaaattaaaatt 21
             |||||||||||||||||||||
Sbjct: 34916 atctcaaaacaaattaaaatt 34936
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 1        atctcaaaacaaattaaaatt 21
                |||||||||||||||||||||
Sbjct: 25543635 atctcaaaacaaattaaaatt 25543655
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>gb|AY771996.1| Homo sapiens interleukin 12 receptor, beta 1 (IL12RB1) gene, complete
             cds
          Length = 30584

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     tctcaaaacaaattaaaatt 21
             ||||||||||||||||||||
Sbjct: 10326 tctcaaaacaaattaaaatt 10307
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>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence
          Length = 195273

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   caactctcccactatagcaa 218
             ||||||||||||||||||||
Sbjct: 84114 caactctcccactatagcaa 84095
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>gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosome y, complete sequence
          Length = 167384

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    caactctcccactatagcaa 218
              ||||||||||||||||||||
Sbjct: 104096 caactctcccactatagcaa 104115
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>gb|AC004079.1| Homo sapiens PAC clone RP1-167F23 from 7, complete sequence
          Length = 102717

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aaaacaaattaaaattctcc 25
             ||||||||||||||||||||
Sbjct: 23001 aaaacaaattaaaattctcc 22982
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>gb|AC146102.2| Pan troglodytes BAC clone RP43-21L13 from 7, complete sequence
          Length = 191971

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aaaacaaattaaaattctcc 25
             ||||||||||||||||||||
Sbjct: 46496 aaaacaaattaaaattctcc 46477
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>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence
          Length = 179668

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 200    aactctcccactatagcaaccatc 223
              |||||||||| |||||||||||||
Sbjct: 144936 aactctcccagtatagcaaccatc 144959
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>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence
          Length = 214405

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 200    aactctcccactatagcaaccatc 223
              |||||||||| |||||||||||||
Sbjct: 198796 aactctcccagtatagcaaccatc 198773
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>gb|AC006337.5| Homo sapiens BAC clone RP11-535N23 from 7, complete sequence
          Length = 172291

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     tctcaaaacaaattaaaatt 21
             ||||||||||||||||||||
Sbjct: 19600 tctcaaaacaaattaaaatt 19581
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>gb|AC145985.2| Pan troglodytes BAC clone RP43-17I24 from 7, complete sequence
          Length = 162953

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      tctcaaaacaaattaaaatt 21
              ||||||||||||||||||||
Sbjct: 158870 tctcaaaacaaattaaaatt 158851
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>gb|AC142285.1| Pan troglodytes BAC clone RP43-169B4 from 7, complete sequence
          Length = 170237

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aaaacaaattaaaattctcc 25
             ||||||||||||||||||||
Sbjct: 66395 aaaacaaattaaaattctcc 66376
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>emb|AL589908.4| Human DNA sequence from clone RP11-258M3 on chromosome 6, complete
            sequence
          Length = 13135

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   tgccaacatcacaccaaaaa 79
            ||||||||||||||||||||
Sbjct: 2445 tgccaacatcacaccaaaaa 2464
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>emb|AL117382.28|HSJ881L22 Human DNA sequence from clone RP5-881L22 on chromosome 20 Contains the
             3' end of the GDAP1L1 gene for ganglioside-induced
             differentiation-associated protein 1-like 1, the R3HDML
             gene for R3HDML domain containing-like, the C20orf142
             gene, three novel genes, the 5' end of one variant of the
             HNF4A gene for hepatocyte nuclear factor 4 and two CpG
             islands, complete sequence
          Length = 131841

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     tctcaaaacaaattaaaatt 21
             ||||||||||||||||||||
Sbjct: 21014 tctcaaaacaaattaaaatt 21033
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>emb|AL121919.20|HSJ492J12 Human DNA sequence from clone RP3-492J12 on chromosome 20 Contains the
             C20orf174 gene for chromosome 20 open reading frame 174
             and a CpG island, complete sequence
          Length = 129942

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   acaggaagaaccaaggaatg 194
             ||||||||||||||||||||
Sbjct: 95346 acaggaagaaccaaggaatg 95327
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>gb|AC124157.4| Equus caballus clone CH241-37P10, complete sequence
          Length = 193986

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   ggcaaaggaataggatagaa 169
             ||||||||||||||||||||
Sbjct: 95592 ggcaaaggaataggatagaa 95611
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>gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, complete sequence
          Length = 174158

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   ggcaaaggaataggatagaa 169
             ||||||||||||||||||||
Sbjct: 72880 ggcaaaggaataggatagaa 72861
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>gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, complete sequence
          Length = 195110

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    atgcatcatcataaccagac 271
              ||||||||||||||||||||
Sbjct: 143504 atgcatcatcataaccagac 143485
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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 146     tcatggcaaaggaataggat 165
               ||||||||||||||||||||
Sbjct: 1782058 tcatggcaaaggaataggat 1782077
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>gb|AC011835.8| Homo sapiens chromosome 8, clone RP11-143D15, complete sequence
          Length = 182151

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    atgcatcatcataaccagac 271
              ||||||||||||||||||||
Sbjct: 175085 atgcatcatcataaccagac 175104
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>gb|AC016065.14| Homo sapiens chromosome 8, clone RP11-115C21, complete sequence
          Length = 185463

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    atgcatcatcataaccagac 271
              ||||||||||||||||||||
Sbjct: 149691 atgcatcatcataaccagac 149710
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>gb|AC177809.2| Pan troglodytes BAC clone CH251-550E5 from chromosome 7, complete
              sequence
          Length = 180443

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      aaaacaaattaaaattctcc 25
              ||||||||||||||||||||
Sbjct: 113148 aaaacaaattaaaattctcc 113129
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>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence
          Length = 148824

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      tctcaaaacaaattaaaatt 21
              ||||||||||||||||||||
Sbjct: 124272 tctcaaaacaaattaaaatt 124291
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>gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosome 16, complete
             sequence
          Length = 180876

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   agaaccaaggaatggcaaca 200
             ||||||||||||||||||||
Sbjct: 66984 agaaccaaggaatggcaaca 66965
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>emb|BX294126.10| Zebrafish DNA sequence from clone DKEYP-35B8 in linkage group 2, complete
              sequence
          Length = 179476

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      aaaacaaattaaaattctcc 25
              ||||||||||||||||||||
Sbjct: 121963 aaaacaaattaaaattctcc 121944
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>emb|BX470215.5| Mouse DNA sequence from clone RP24-558L5 on chromosome X, complete
             sequence
          Length = 137502

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   caactctcccactatagcaa 218
             ||||||||||||||||||||
Sbjct: 24102 caactctcccactatagcaa 24083
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>gb|AF005550.1|AF005550 Tetrahymena thermophila programmed DNA degradation 2 protein
          (Pdd2p) mRNA, complete cds
          Length = 1210

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 4  tcaaaacaaattaaaattct 23
          ||||||||||||||||||||
Sbjct: 6  tcaaaacaaattaaaattct 25
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>gb|AC130533.2| Mus musculus BAC clone RP23-211B19 from 8, complete sequence
          Length = 203431

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   caactctcccactatagcaa 218
             ||||||||||||||||||||
Sbjct: 59775 caactctcccactatagcaa 59794
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>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence
          Length = 140942

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   gacatgcttcctcgcatggt 293
             ||||||||||||||||||||
Sbjct: 62021 gacatgcttcctcgcatggt 62040
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>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    ggcaaaggaataggatagaa 169
              ||||||||||||||||||||
Sbjct: 928595 ggcaaaggaataggatagaa 928614
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>emb|AL772387.13| Mouse DNA sequence from clone RP23-133B16 on chromosome 2, complete
             sequence
          Length = 195412

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   caactctcccactatagcaa 218
             ||||||||||||||||||||
Sbjct: 19584 caactctcccactatagcaa 19603
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>emb|AL669952.8| Mouse DNA sequence from clone RP23-154A15 on chromosome 4, complete
             sequence
          Length = 183213

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     tctcaaaacaaattaaaatt 21
             ||||||||||||||||||||
Sbjct: 54270 tctcaaaacaaattaaaatt 54251


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,468,564
Number of Sequences: 3902068
Number of extensions: 3468564
Number of successful extensions: 72088
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71972
Number of HSP's gapped (non-prelim): 116
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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