ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 33 0.14
2LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 33 0.14
3LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 32 0.40
4LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 31 0.89
5LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12) 31 0.89
6LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12) 30 2.0
7LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2) 30 2.0
8LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 29 2.6
9LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12) 29 2.6
10LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94) 28 4.4
11LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3) 28 4.4
12LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12) 28 4.4
13LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1) 28 4.4
14NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 28 5.8
15NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 28 5.8
16LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 28 7.6
17LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12) 28 7.6
18CB024_HUMAN (Q9BV87) Protein C2orf24 28 7.6
19KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-) 27 9.9
20ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator... 27 9.9

>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = -2

Query: 313 HTGQAEGLTARGIPNSISI 257
           H G A GLTA+GIPNSISI
Sbjct: 844 HKGAAAGLTAKGIPNSISI 862



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -2

Query: 307 GQAEGLTARGIPNSISI 257
           G AEG+TARGIPNSISI
Sbjct: 847 GAAEGITARGIPNSISI 863



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -2

Query: 310 TGQAEGLTARGIPNSISI 257
           TG A G+TA+GIPNSISI
Sbjct: 849 TGAAAGITAKGIPNSISI 866



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -2

Query: 307 GQAEGLTARGIPNSISI 257
           G A GL+ARGIPNSISI
Sbjct: 854 GDAAGLSARGIPNSISI 870



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>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)|
          Length = 864

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 14/19 (73%), Positives = 14/19 (73%)
 Frame = -2

Query: 313 HTGQAEGLTARGIPNSISI 257
           H    EGLT RGIPNSISI
Sbjct: 846 HPSSKEGLTFRGIPNSISI 864



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>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)|
          Length = 864

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -2

Query: 313 HTGQAEGLTARGIPNSISI 257
           H    EGLT +GIPNSISI
Sbjct: 846 HRSSEEGLTFKGIPNSISI 864



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>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)|
          Length = 865

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = -2

Query: 301 AEGLTARGIPNSISI 257
           +EGLT RGIPNSISI
Sbjct: 851 SEGLTCRGIPNSISI 865



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 298 EGLTARGIPNSISI 257
           EGLT RGIPNSISI
Sbjct: 853 EGLTCRGIPNSISI 866



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>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -2

Query: 310 TGQAEGLTARGIPNSISI 257
           T + EGLT RGIPNSISI
Sbjct: 845 TCEDEGLTFRGIPNSISI 862



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>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)|
          Length = 853

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 298 EGLTARGIPNSISI 257
           EGLT RGIPNSISI
Sbjct: 840 EGLTFRGIPNSISI 853



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>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)|
          Length = 857

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 298 EGLTARGIPNSISI 257
           EGLT RGIPNSISI
Sbjct: 844 EGLTFRGIPNSISI 857



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>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 298 EGLTARGIPNSISI 257
           EGLT RGIPNSISI
Sbjct: 848 EGLTFRGIPNSISI 861



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>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)|
          Length = 839

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 298 EGLTARGIPNSISI 257
           EGLT RGIPNSISI
Sbjct: 826 EGLTFRGIPNSISI 839



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>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (hN2) [Contains: Notch 2 extracellular truncation;
           Notch 2 intracellular domain]
          Length = 2471

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -2

Query: 184 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 47
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758



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>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (Motch B) [Contains: Notch 2 extracellular
           truncation; Notch 2 intracellular domain]
          Length = 2470

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -2

Query: 184 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 47
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756



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>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 304 QAEGLTARGIPNSISI 257
           + +GLTA GIPNSISI
Sbjct: 862 KGQGLTAMGIPNSISI 877



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>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)|
          Length = 859

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2

Query: 298 EGLTARGIPNSISI 257
           EGLT +GIPNS+SI
Sbjct: 846 EGLTGKGIPNSVSI 859



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>CB024_HUMAN (Q9BV87) Protein C2orf24|
          Length = 410

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 268 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 104
           ++++ S  V  + L L C P    P+L     C  E C     +C+ +  N  +C  G +
Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303

Query: 103 GMRKL 89
           G+R L
Sbjct: 304 GLRSL 308



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>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 194

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 89  ELPHADQTRRARTLIALIIHAPAQLSV 169
           ELP  D TR +RTL  L+ HAP  + +
Sbjct: 7   ELPAPDATRISRTLSYLLRHAPQTIGL 33



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>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT|
           protein) (Dioxin receptor, nuclear translocator)
           (Hypoxia-inducible factor 1 beta) (HIF-1 beta)
          Length = 800

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 290 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 204
           HR    EQH+    A+PSS+P  F  +LS+L
Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,018,715
Number of Sequences: 219361
Number of extensions: 895119
Number of successful extensions: 2365
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2361
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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