ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 270 2e-69
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 90 5e-15
3gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, co... 62 1e-06
4ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA 60 4e-06
5ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA 60 4e-06
6gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 60 4e-06
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 4e-06
8emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 60 4e-06
9gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 60 4e-06
10gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual posit... 60 4e-06
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
12dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
13dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
14dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
15dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
16dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
17ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
18gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full... 52 0.001
19gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partia... 48 0.017
20ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.068
21gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.068
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.068
23dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.068
24dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.068
25dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.068
26dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.068
27gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA,... 46 0.068
28gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA,... 46 0.068
29dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2... 46 0.068
30ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.27
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
32dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
33dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.27
34dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.27
35gb|AY111869.1| Zea mays CL452_-8 mRNA sequence 44 0.27
36gb|AY103567.1| Zea mays PCO116252 mRNA sequence 44 0.27
37emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 1.1
38emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 1.1
39gb|AY110522.1| Zea mays CL4677_2 mRNA sequence 40 4.2
40gb|AY104322.1| Zea mays PCO093659 mRNA sequence 40 4.2 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  270 bits (136), Expect = 2e-69
 Identities = 149/153 (97%), Gaps = 4/153 (2%)
 Strand = Plus / Minus

                                                                        
Query: 20   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 80   agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 135
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                             
Query: 136  cttaattattcatgcaccggcacaactctctgt 168
            |||||||||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744



 Score =  242 bits (122), Expect = 6e-61
 Identities = 128/130 (98%)
 Strand = Plus / Minus

                                                                        
Query: 185  agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 244
            ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                                        
Query: 245  gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 2608

                      
Query: 305  tcccgtgtgg 314
            ||||||||||
Sbjct: 2607 tcccgtgtgg 2598
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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA
           sequence
          Length = 1129

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 57/61 (93%)
 Strand = Plus / Minus

                                                                       
Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 313
           ||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 906 tcagatggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtg 847

            
Query: 314 g 314
           |
Sbjct: 846 g 846



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 13   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 62
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 95   ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 139
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
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>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds
          Length = 3003

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 246  tgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccc 296
            ||||||| ||||||||| | |||||| ||||||||| ||||||||||||||
Sbjct: 2772 tgctcagctcagatggagacgctgttggggatgcccatggcggtgagcccc 2722
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>ref|XM_469412.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2686

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 254  tcagatggatatgctgttcgggatgcccctggcggtgagccc 295
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2446 tcagatggagatgctgttggggatgcccatggcggtgagccc 2405
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>ref|XM_469411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3165

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 254  tcagatggatatgctgttcgggatgcccctggcggtgagccc 295
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2925 tcagatggagatgctgttggggatgcccatggcggtgagccc 2884
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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 254   tcagatggatatgctgttcgggatgcccctggcggtgagccc 295
             ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 65816 tcagatggagatgctgttggggatgcccatggcggtgagccc 65775
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 251      agatcagatggatatgctgttcgggatgcccctggcgg 288
                |||||||||||| |||||||| ||||||||||||||||
Sbjct: 30026452 agatcagatggagatgctgttggggatgcccctggcgg 30026415



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 254      tcagatggatatgctgttcgggatgcccctggcggtgagccc 295
                ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 27821686 tcagatggagatgctgttggggatgcccatggcggtgagccc 27821645
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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 251  agatcagatggatatgctgttcgggatgcccctggcgg 288
            |||||||||||| |||||||| ||||||||||||||||
Sbjct: 2698 agatcagatggagatgctgttggggatgcccctggcgg 2661
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 251   agatcagatggatatgctgttcgggatgcccctggcgg 288
             |||||||||||| |||||||| ||||||||||||||||
Sbjct: 81299 agatcagatggagatgctgttggggatgcccctggcgg 81336
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>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity
            lipoxygenase mRNA, complete cds
          Length = 3154

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 254  tcagatggatatgctgttcgggatgcccctggcggtgagccc 295
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2919 tcagatggagatgctgttggggatgcccatggcggtgagccc 2878
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 251      agatcagatggatatgctgttcgggatgcccctggcgg 288
                |||||||||||| |||||||| ||||||||||||||||
Sbjct: 30117874 agatcagatggagatgctgttggggatgcccctggcgg 30117837



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 254      tcagatggatatgctgttcgggatgcccctggcggtgagccc 295
                ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 27913010 tcagatggagatgctgttggggatgcccatggcggtgagccc 27912969
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>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full
            insert sequence
          Length = 1560

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 254  tcagatggatatgctgttcgggatgcccctggcggtgagccc 295
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 1332 tcagatggagatgctgttggggatgcccatggcggtgagccc 1291
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>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full
            insert sequence
          Length = 2851

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 254  tcagatggatatgctgttcgggatgcccctggcggtgagccc 295
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2597 tcagatggagatgctgttggggatgcccatggcggtgagccc 2556
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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 251  agatcagatggatatgctgttcgggatgcccctggcgg 288
            |||||||||||| |||||||| ||||||||||||||||
Sbjct: 2731 agatcagatggagatgctgttggggatgcccctggcgg 2694
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>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full
            insert sequence
          Length = 3167

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 254  tcagatggatatgctgttcgggatgcccctggcggtgagccc 295
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2927 tcagatggagatgctgttggggatgcccatggcggtgagccc 2886
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>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full
            insert sequence
          Length = 1726

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 254  tcagatggatatgctgttcgggatgcccctggcggtgagccc 295
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 1497 tcagatggagatgctgttggggatgcccatggcggtgagccc 1456
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>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 254  tcagatggatatgctgttcgggatgcccctggcgg 288
            ||||||||| |||||||| ||||||||||||||||
Sbjct: 2613 tcagatggagatgctgttggggatgcccctggcgg 2579
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>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA
           sequence
          Length = 1020

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 254 tcagatggatatgctgttcgggatgcccctggcggtgagccc 295
           ||||||||| |||||||| ||||||||| | |||||||||||
Sbjct: 753 tcagatggagatgctgttggggatgcccttagcggtgagccc 712
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>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds
          Length = 1814

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 252  gatcagatggatatgctgttcgggatgcccctggcggtga 291
            ||||||||||| |||||||| ||||||||| |||| ||||
Sbjct: 1558 gatcagatggagatgctgttggggatgcccttggctgtga 1519
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>ref|XM_483279.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3198

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 253  atcagatggatatgctgttcgggatgcccctggcggtga 291
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2978 atcagatggatgtgctgttggggatgcccatgccggtga 2940
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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 127    ccttattgccttaattattcatg 149
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 127   ccttattgccttaattattcatg 149
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 253      atcagatggatatgctgttcgggatgcccctggcggtga 291
                ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 25242576 atcagatggatgtgctgttggggatgcccatgccggtga 25242538



 Score = 46.1 bits (23), Expect = 0.068
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 253      atcagatggatatgctgttcgggatgcccctggcggtga 291
                ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 25209453 atcagatggatgtgctgttggggatgcccatgccggtga 25209491
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 127      ccttattgccttaattattcatg 149
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 127      ccttattgccttaattattcatg 149
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060
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>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1168A08
          Length = 138135

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 253    atcagatggatatgctgttcgggatgcccctggcggtga 291
              ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 107699 atcagatggatgtgctgttggggatgcccatgccggtga 107661



 Score = 46.1 bits (23), Expect = 0.068
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 253   atcagatggatatgctgttcgggatgcccctggcggtga 291
             ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 74576 atcagatggatgtgctgttggggatgcccatgccggtga 74614
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>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016N23
          Length = 147336

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 253   atcagatggatatgctgttcgggatgcccctggcggtga 291
             ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 17761 atcagatggatgtgctgttggggatgcccatgccggtga 17723
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>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full
            insert sequence
          Length = 3196

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 253  atcagatggatatgctgttcgggatgcccctggcggtga 291
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2976 atcagatggatgtgctgttggggatgcccatgccggtga 2938
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>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds
          Length = 2232

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 253  atcagatggatatgctgttcgggatgcccctggcggtga 291
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2053 atcagatggatgtgctgttggggatgcccatgccggtga 2015
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>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds
          Length = 2664

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 253  atcagatggatatgctgttcgggatgcccctggcggtga 291
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2461 atcagatggatgtgctgttggggatgcccatgccggtga 2423
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>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for
            lipoxygenase, complete cds
          Length = 3007

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 253  atcagatggatatgctgttcgggatgcccctggcggtga 291
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2891 atcagatggatgtgctgttggggatgcccatgccggtga 2853
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>ref|XM_464447.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3123

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 254  tcagatggatatgctgttcgggatgcccct 283
            ||||||||| |||||||| |||||||||||
Sbjct: 2881 tcagatggagatgctgtttgggatgcccct 2852
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 254     tcagatggatatgctgttcgggatgcccct 283
               ||||||||| |||||||| |||||||||||
Sbjct: 5276963 tcagatggagatgctgtttgggatgcccct 5276992
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>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1225_F07
          Length = 142772

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 254  tcagatggatatgctgttcgggatgcccct 283
            ||||||||| |||||||| |||||||||||
Sbjct: 3266 tcagatggagatgctgtttgggatgcccct 3295
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>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full
            insert sequence
          Length = 3160

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 254  tcagatggatatgctgttcgggatgcccct 283
            ||||||||| |||||||| |||||||||||
Sbjct: 2880 tcagatggagatgctgtttgggatgcccct 2851
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>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full
            insert sequence
          Length = 2250

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 254  tcagatggatatgctgttcgggatgcccct 283
            ||||||||| |||||||| |||||||||||
Sbjct: 2042 tcagatggagatgctgtttgggatgcccct 2013
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>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence
          Length = 568

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 258 atggatatgctgttcgggatgcccctggcggtgagcccctcg 299
           ||||| |||||||| || |||||| |||| ||||||||||||
Sbjct: 363 atggagatgctgttgggaatgcccatggcagtgagcccctcg 322
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>gb|AY103567.1| Zea mays PCO116252 mRNA sequence
          Length = 3135

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 258  atggatatgctgttcgggatgcccctggcggtgagcccctcggcct 303
            ||||| |||||||| || |||||| |||| || |||||||||||||
Sbjct: 2896 atggagatgctgttgggaatgcccatggcagtaagcccctcggcct 2851
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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    aaacaagggattttttctgca 54
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585
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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    gcaaaacaagggattttttct 51
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614
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>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence
          Length = 1304

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 252 gatcagatggatatgctgttcgggatgcccct 283
           ||||||||||| |||||| | |||||||||||
Sbjct: 132 gatcagatggagatgctgctggggatgcccct 163
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>gb|AY104322.1| Zea mays PCO093659 mRNA sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 252  gatcagatggatatgctgttcgggatgcccct 283
            ||||||||||| |||||| | |||||||||||
Sbjct: 1216 gatcagatggagatgctgctggggatgcccct 1185


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,871,872
Number of Sequences: 3902068
Number of extensions: 1871872
Number of successful extensions: 32137
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31994
Number of HSP's gapped (non-prelim): 142
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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