ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor 31 1.7
2TIR3_YEAST (P40552) Cell wall protein TIR3 precursor 30 3.7
3ZP2_CANFA (P47983) Zona pellucida sperm-binding protein 2 precur... 29 6.3
4KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-as... 28 8.2
5ZP2_BOVIN (Q9BH10) Zona pellucida sperm-binding protein 2 precur... 28 8.2
6FUR2_DROME (P30432) Furin-like protease 2 precursor (EC 3.4.21.7... 28 8.2
7KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-a... 28 8.2
8PYC_ASPNG (Q9HES8) Pyruvate carboxylase (EC 6.4.1.1) (Pyruvic ca... 28 8.2

>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor|
          Length = 4010

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 271  CRPPHSTSSAACRRCPTGCSSCYDP 197
            C P H   S +C+RC + C  C  P
Sbjct: 990  CSPQHYRDSGSCKRCDSHCVECQGP 1014



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>TIR3_YEAST (P40552) Cell wall protein TIR3 precursor|
          Length = 269

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
 Frame = +1

Query: 106 TISSSGSHQSRTTTVISKLKEKQRRLIDRWMXXXXXXXXXXXXXXXXKKLNAADGMSPRN 285
           T+S SGS  +  ++  S   E                             +A++  S  +
Sbjct: 124 TVSESGSESATASSDASSASESSSAASSSASESSSAASSSASESSSAASSSASESSSAAS 183

Query: 286 LGCRR*KKPMPSSSALKGTA*STSAVSRQATANTPVARGSRHDSSA--STRSPCAATS 453
                  K   S+ +   +A S++A S  + A++  +  ++  SSA  ST S  +ATS
Sbjct: 184 SSASEAAKSSSSAKSSGSSAASSAASSASSKASSAASSSAKASSSAEKSTNSSSSATS 241



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>ZP2_CANFA (P47983) Zona pellucida sperm-binding protein 2 precursor (Zona|
           pellucida glycoprotein ZP2) (Zona pellucida protein A)
          Length = 715

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 258 IQLLPPPAVAVRPGALAATIHPSIDQPAL 172
           +Q LPPP  +VRPG LA  +    D+  L
Sbjct: 475 VQSLPPPVASVRPGPLALILQTYPDKSYL 503



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>KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-associated|
           protein 10.3) (High sulfur keratin-associated protein
           10.3) (Keratin-associated protein 18-3)
           (Keratin-associated protein 18.3)
          Length = 221

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
 Frame = -3

Query: 370 AC*RRWCSTPCPSRRCCWXXXXXXXXXXXXXXTCRPPHSTSSAACRR------CPTGCSS 209
           AC    C  PC +  CC                C P    SS  C+       C +GC+S
Sbjct: 21  ACPESCCEPPCCAPSCC-------APAPCLTLVCTPVSCVSSPCCQAACEPSPCQSGCTS 73

Query: 208 CYDPS 194
              PS
Sbjct: 74  SCTPS 78



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>ZP2_BOVIN (Q9BH10) Zona pellucida sperm-binding protein 2 precursor (Zona|
           pellucida glycoprotein ZP2) (Zona pellucida protein A)
          Length = 713

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 258 IQLLPPPAVAVRPGALAATIHPSIDQPAL 172
           ++ LPPP  +V+PG LA T+    D   L
Sbjct: 473 VESLPPPVASVKPGPLALTLQTYPDNSYL 501



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>FUR2_DROME (P30432) Furin-like protease 2 precursor (EC 3.4.21.75) (Furin-2)|
          Length = 1679

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 259  HSTSSAACRRCPTGCSSCYDP 197
            + T+SA C+ C   C SC+ P
Sbjct: 1392 YDTTSATCKTCHDSCRSCFGP 1412



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>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated|
           protein 10.11) (High sulfur keratin-associated protein
           10.11) (Keratin-associated protein 18-11)
           (Keratin-associated protein 18.11)
          Length = 298

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
 Frame = -3

Query: 367 C*RRWCSTPCPSRRCCWXXXXXXXXXXXXXXTCRPPHSTSSAACR------RCPTGCSSC 206
           C    C  PC +  CC                C P    SS  C+       C +GC+S 
Sbjct: 22  CPESCCEPPCSAPSCC-------APAPSLSLVCTPVSCVSSPCCQAACEPSACQSGCTSS 74

Query: 205 YDPS 194
             PS
Sbjct: 75  CTPS 78



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>PYC_ASPNG (Q9HES8) Pyruvate carboxylase (EC 6.4.1.1) (Pyruvic carboxylase)|
           (PCB)
          Length = 1192

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 107 VRSSFDHLFAHRRKASEAYLVMLISIINMAAAYL 6
           V S  DHL  HR+KA EAY++          AYL
Sbjct: 70  VYSHEDHLSMHRQKADEAYMIGKRGQYTPVGAYL 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,061,585
Number of Sequences: 219361
Number of extensions: 845377
Number of successful extensions: 3033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3029
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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