ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC133910.6| Mus musculus chromosome 14, clone RP24-484F23, co... 42 1.5
2emb|AL355382.6| Human DNA sequence from clone RP11-408C8 on chro... 42 1.5
3gb|AC093416.2| Homo sapiens chromosome 3 clone RP11-659P16, comp... 42 1.5
4emb|BX248403.6| Zebrafish DNA sequence from clone DKEY-30H14 in ... 42 1.5
5gb|AF087156.1|HSTOP2B14 Homo sapiens DNA topoisomerase II beta (... 42 1.5
6emb|BX284114.6| Mouse DNA sequence from clone RP23-258B4 on chro... 42 1.5
7ref|NM_112770.1| Arabidopsis thaliana unknown protein AT3G18840 ... 40 5.9
8ref|XM_631306.1| Dictyostelium discoideum hypothetical protein (... 40 5.9
9gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
10gb|AC024753.1| Caenorhabditis elegans cosmid Y23H5B, complete se... 40 5.9
11gb|AC147478.2| Pan troglodytes BAC clone CH251-571L4 from Y, com... 40 5.9
12gb|AC147131.2| Pan troglodytes BAC clone CH251-403A11 from Y, co... 40 5.9
13ref|XM_846751.1| PREDICTED: Canis familiaris similar to CDC42 sm... 40 5.9
14gb|AC010799.15| Homo sapiens chromosome 15, clone RP11-40J8, com... 40 5.9
15emb|BX510935.28| Zebrafish DNA sequence from clone DKEY-207L24 i... 40 5.9
16emb|AL645665.11| Human DNA sequence from clone RP11-963P9 on chr... 40 5.9
17emb|AL603753.3| Human DNA sequence from clone RP13-11B7 on chrom... 40 5.9
18emb|AL512451.7| Human DNA sequence from clone RP11-401G10 on chr... 40 5.9
19gb|AC048382.7| Homo sapiens chromosome 15, clone RP11-182J1, com... 40 5.9
20gb|AC154601.3| Mus musculus BAC clone RP23-342J18 from chromosom... 40 5.9
21gb|AC127486.3| Homo sapiens chromosome 15, clone CTD-2012K22, co... 40 5.9
22emb|AL731788.8| Zebrafish DNA sequence from clone RP71-1G13 in l... 40 5.9
23emb|BX323793.10| Zebrafish DNA sequence from clone DKEY-185P18 i... 40 5.9
24gb|AC025678.7| Homo sapiens chromosome 15, clone RP11-602M11, co... 40 5.9
25emb|BX901980.12| Zebrafish DNA sequence from clone CH211-258F1 i... 40 5.9
26gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 5.9
27gb|AC005630.1| Homo sapiens PAC clone RP5-1129D5 from 15, comple... 40 5.9
28gb|AC010725.5| Homo sapiens BAC clone RP11-156N7 from 15, comple... 40 5.9
29gb|AC091103.4| Homo sapiens chromosome 18, clone RP11-749G1, com... 40 5.9
30gb|AC091111.5| Homo sapiens chromosome 18, clone RP11-837M2, com... 40 5.9
31gb|AC019322.8| Homo sapiens chromosome 15, clone RP11-382B18, co... 40 5.9
32gb|AC027139.5|AC027139 Homo sapiens, clone RP11-1H8, complete se... 40 5.9
33gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 40 5.9
34dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
35gb|AC023274.2|AC023274 Homo sapiens clone RP11-307L15, complete ... 40 5.9
36gb|AC123768.8| Homo sapiens chromosome 15, clone RP11-1000B6, co... 40 5.9
37gb|AC026150.7| Homo sapiens chromosome 15, clone RP11-605N15, co... 40 5.9
38gb|AC135983.4| Homo sapiens chromosome 15, clone RP11-632K20, co... 40 5.9
39gb|AC007562.4|AC007562 Homo sapiens BAC clone RP11-497C14 from Y... 40 5.9
40ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 40 5.9
41gb|AC126610.12| Homo sapiens chromosome 15, clone RP11-733O21, c... 40 5.9
42gb|AC111164.6| Homo sapiens chromosome 15, clone RP11-1109N12, c... 40 5.9
43dbj|AP002039.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 5.9
44emb|Z69664.1|CEK04D7 Caenorhabditis elegans Cosmid K04D7, comple... 40 5.9
45gb|AC124094.4| Homo sapiens chromosome 15, clone RP11-1203N1, co... 40 5.9 
>gb|AC133910.6| Mus musculus chromosome 14, clone RP24-484F23, complete sequence
          Length = 235453

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 3      gaaatcaatattttgaacaga 23
              |||||||||||||||||||||
Sbjct: 130708 gaaatcaatattttgaacaga 130688
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>emb|AL355382.6| Human DNA sequence from clone RP11-408C8 on chromosome 6, complete
              sequence
          Length = 141756

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    attctaaacactacagtatca 365
              |||||||||||||||||||||
Sbjct: 129245 attctaaacactacagtatca 129225
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>gb|AC093416.2| Homo sapiens chromosome 3 clone RP11-659P16, complete sequence
          Length = 189308

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 221    agttacatgcaacattattttctatagat 249
              |||||||||||| ||||||| ||||||||
Sbjct: 109719 agttacatgcaatattatttactatagat 109691
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>emb|BX248403.6| Zebrafish DNA sequence from clone DKEY-30H14 in linkage group 20,
             complete sequence
          Length = 154669

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 225   acatgcaacattattttctatagat 249
             |||||||||||||||||||| ||||
Sbjct: 52336 acatgcaacattattttctaaagat 52312
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>gb|AF087156.1|HSTOP2B14 Homo sapiens DNA topoisomerase II beta (TOP2B) gene, exons 29 and
           30
          Length = 1347

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 221 agttacatgcaacattattttctatagat 249
           |||||||||||| ||||||| ||||||||
Sbjct: 289 agttacatgcaatattatttactatagat 317
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>emb|BX284114.6| Mouse DNA sequence from clone RP23-258B4 on chromosome X, complete
             sequence
          Length = 181900

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    acagatcacagaacaaatgaa 39
             |||||||||||||||||||||
Sbjct: 60743 acagatcacagaacaaatgaa 60723
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>ref|NM_112770.1| Arabidopsis thaliana unknown protein AT3G18840 mRNA, complete cds
          Length = 2097

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 328 attgaagcatggatcatattctaa 351
           ||||||| ||||||||||||||||
Sbjct: 858 attgaagaatggatcatattctaa 881
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>ref|XM_631306.1| Dictyostelium discoideum hypothetical protein (DDB0188254), partial
           mRNA
          Length = 2046

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 313 aaaccagaacttagaattga 332
           ||||||||||||||||||||
Sbjct: 455 aaaccagaacttagaattga 436
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>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBb0004A05, complete sequence
          Length = 157913

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    cacaatacatgatatgctac 139
              ||||||||||||||||||||
Sbjct: 115878 cacaatacatgatatgctac 115859
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>gb|AC024753.1| Caenorhabditis elegans cosmid Y23H5B, complete sequence
          Length = 69663

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   atgaaattcgtccaaaaaac 54
            ||||||||||||||||||||
Sbjct: 2313 atgaaattcgtccaaaaaac 2332
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>gb|AC147478.2| Pan troglodytes BAC clone CH251-571L4 from Y, complete sequence
          Length = 188138

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 76000 tattttctatagatcatctt 75981
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>gb|AC147131.2| Pan troglodytes BAC clone CH251-403A11 from Y, complete sequence
          Length = 168159

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    tattttctatagatcatctt 255
              ||||||||||||||||||||
Sbjct: 108287 tattttctatagatcatctt 108268
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>ref|XM_846751.1| PREDICTED: Canis familiaris similar to CDC42 small effector 2
            (LOC609492), mRNA
          Length = 1149

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 375  cagtaacaaattaacagtagcagg 398
            |||||||||||||||| |||||||
Sbjct: 1089 cagtaacaaattaacaatagcagg 1066
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>gb|AC010799.15| Homo sapiens chromosome 15, clone RP11-40J8, complete sequence
          Length = 179508

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    tattttctatagatcatctt 255
              ||||||||||||||||||||
Sbjct: 167870 tattttctatagatcatctt 167889
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>emb|BX510935.28| Zebrafish DNA sequence from clone DKEY-207L24 in linkage group 14,
             complete sequence
          Length = 128666

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   aacagtagcaggacattaat 406
             ||||||||||||||||||||
Sbjct: 62146 aacagtagcaggacattaat 62127
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>emb|AL645665.11| Human DNA sequence from clone RP11-963P9 on chromosome X, complete
             sequence
          Length = 77344

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 60849 tattttctatagatcatctt 60868
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>emb|AL603753.3| Human DNA sequence from clone RP13-11B7 on chromosome Xp11.4-21.2
             Contains the 3' end of a novel gene (FLJ36601), complete
             sequence
          Length = 138166

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     acgaaatcaatattttgaacagat 24
             ||||||||||||||||||| ||||
Sbjct: 47074 acgaaatcaatattttgaagagat 47051
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>emb|AL512451.7| Human DNA sequence from clone RP11-401G10 on chromosome 6, complete
             sequence
          Length = 59449

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   gaaccagctaaaaaagttac 226
             ||||||||||||||||||||
Sbjct: 23310 gaaccagctaaaaaagttac 23291
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>gb|AC048382.7| Homo sapiens chromosome 15, clone RP11-182J1, complete sequence
          Length = 171486

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 35389 tattttctatagatcatctt 35408
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>gb|AC154601.3| Mus musculus BAC clone RP23-342J18 from chromosome 16, complete
             sequence
          Length = 189457

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 228   tgcaacattattttctatagatca 251
             |||||||||||||||||| |||||
Sbjct: 58038 tgcaacattattttctattgatca 58015
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>gb|AC127486.3| Homo sapiens chromosome 15, clone CTD-2012K22, complete sequence
          Length = 89716

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 82790 tattttctatagatcatctt 82771
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>emb|AL731788.8| Zebrafish DNA sequence from clone RP71-1G13 in linkage group 12
             Contains part of a novel gene, a novel gene similar to
             PTEN (phosphatase and tensin homolog), a novel LINE
             element with a potentially active ORF1 and four CpG
             islands, complete sequence
          Length = 165909

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   tttggagaaaccagaactta 325
             ||||||||||||||||||||
Sbjct: 31128 tttggagaaaccagaactta 31109
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>emb|BX323793.10| Zebrafish DNA sequence from clone DKEY-185P18 in linkage group 16,
             complete sequence
          Length = 170199

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 215   taaaaaagttacatgcaacattat 238
             ||||||||| ||||||||||||||
Sbjct: 40489 taaaaaagtaacatgcaacattat 40466
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>gb|AC025678.7| Homo sapiens chromosome 15, clone RP11-602M11, complete sequence
          Length = 189533

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    tattttctatagatcatctt 255
              ||||||||||||||||||||
Sbjct: 130098 tattttctatagatcatctt 130117
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>emb|BX901980.12| Zebrafish DNA sequence from clone CH211-258F1 in linkage group 22,
              complete sequence
          Length = 163109

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    aacagtagcaggacattaat 406
              ||||||||||||||||||||
Sbjct: 153481 aacagtagcaggacattaat 153500
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 236     tattttctatagatcatctt 255
               ||||||||||||||||||||
Sbjct: 5709269 tattttctatagatcatctt 5709250
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>gb|AC005630.1| Homo sapiens PAC clone RP5-1129D5 from 15, complete sequence
          Length = 137699

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 21740 tattttctatagatcatctt 21721
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>gb|AC010725.5| Homo sapiens BAC clone RP11-156N7 from 15, complete sequence
          Length = 155351

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    tattttctatagatcatctt 255
              ||||||||||||||||||||
Sbjct: 136985 tattttctatagatcatctt 137004
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>gb|AC091103.4| Homo sapiens chromosome 18, clone RP11-749G1, complete sequence
          Length = 204340

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 77625 tattttctatagatcatctt 77606
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>gb|AC091111.5| Homo sapiens chromosome 18, clone RP11-837M2, complete sequence
          Length = 174645

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 77625 tattttctatagatcatctt 77606
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>gb|AC019322.8| Homo sapiens chromosome 15, clone RP11-382B18, complete sequence
          Length = 175205

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    tattttctatagatcatctt 255
              ||||||||||||||||||||
Sbjct: 118838 tattttctatagatcatctt 118857
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>gb|AC027139.5|AC027139 Homo sapiens, clone RP11-1H8, complete sequence
          Length = 151498

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    tattttctatagatcatctt 255
              ||||||||||||||||||||
Sbjct: 105766 tattttctatagatcatctt 105785
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 55     actaaattagtctattacaatctttaca 82
              ||||||| | ||||||||||||||||||
Sbjct: 340133 actaaataaatctattacaatctttaca 340160



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 55     actaaattagtctattacaatctttaca 82
              ||||||| | ||||||||||||||||||
Sbjct: 230280 actaaataaatctattacaatctttaca 230307
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 120      cacaatacatgatatgctac 139
                ||||||||||||||||||||
Sbjct: 19184872 cacaatacatgatatgctac 19184853
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>gb|AC023274.2|AC023274 Homo sapiens clone RP11-307L15, complete sequence
          Length = 137682

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 99133 tattttctatagatcatctt 99114
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>gb|AC123768.8| Homo sapiens chromosome 15, clone RP11-1000B6, complete sequence
          Length = 186455

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 74511 tattttctatagatcatctt 74492
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>gb|AC026150.7| Homo sapiens chromosome 15, clone RP11-605N15, complete sequence
          Length = 116894

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 45161 tattttctatagatcatctt 45142
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>gb|AC135983.4| Homo sapiens chromosome 15, clone RP11-632K20, complete sequence
          Length = 173389

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 61554 tattttctatagatcatctt 61573
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>gb|AC007562.4|AC007562 Homo sapiens BAC clone RP11-497C14 from Y, complete sequence
          Length = 137077

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 236  tattttctatagatcatctt 255
            ||||||||||||||||||||
Sbjct: 1350 tattttctatagatcatctt 1369
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 236     tattttctatagatcatctt 255
               ||||||||||||||||||||
Sbjct: 3701270 tattttctatagatcatctt 3701289



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 236     tattttctatagatcatctt 255
               ||||||||||||||||||||
Sbjct: 2347102 tattttctatagatcatctt 2347083
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>gb|AC126610.12| Homo sapiens chromosome 15, clone RP11-733O21, complete sequence
          Length = 170362

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 79971 tattttctatagatcatctt 79990
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>gb|AC111164.6| Homo sapiens chromosome 15, clone RP11-1109N12, complete sequence
          Length = 144563

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   tattttctatagatcatctt 255
             ||||||||||||||||||||
Sbjct: 56008 tattttctatagatcatctt 56027
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>dbj|AP002039.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MCB22
          Length = 29694

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 328  attgaagcatggatcatattctaa 351
            ||||||| ||||||||||||||||
Sbjct: 5381 attgaagaatggatcatattctaa 5404
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>emb|Z69664.1|CEK04D7 Caenorhabditis elegans Cosmid K04D7, complete sequence
          Length = 38799

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    atcacagaacaaatgaaattcgtc 46
             |||||||||| |||||||||||||
Sbjct: 12929 atcacagaacgaatgaaattcgtc 12952
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>gb|AC124094.4| Homo sapiens chromosome 15, clone RP11-1203N1, complete sequence
          Length = 139165

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    tattttctatagatcatctt 255
              ||||||||||||||||||||
Sbjct: 111374 tattttctatagatcatctt 111393


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,316,015
Number of Sequences: 3902068
Number of extensions: 4316015
Number of successful extensions: 80169
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80037
Number of HSP's gapped (non-prelim): 132
length of query: 436
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 414
effective length of database: 17,147,199,772
effective search space: 7098940705608
effective search space used: 7098940705608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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