ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CY24A_RAT (Q62737) Cytochrome b-245 light chain (p22 phagocyte B... 29 5.2
2CHI3_CANAL (P40954) Chitinase 3 precursor (EC 3.2.1.14) 29 6.8

>CY24A_RAT (Q62737) Cytochrome b-245 light chain (p22 phagocyte B-cytochrome)|
           (Neutrophil cytochrome b 22 kDa polypeptide) (p22-phox)
           (p22phox) (Cytochrome b(558) alpha chain) (Cytochrome
           b558 alpha subunit) (Superoxide-generating NADPH oxidase
           light chai
          Length = 191

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 46  RAKRKKGKS*QRCSLYKGLQPTMDISTS*SKNYYCMAITRVKTTIP 183
           R KRKKG + +RC   K L   + +    ++NYY  A+  +  ++P
Sbjct: 55  RGKRKKGSTMERCG-QKYLTAVVKLFGPLTRNYYVRAVLHLLLSVP 99



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>CHI3_CANAL (P40954) Chitinase 3 precursor (EC 3.2.1.14)|
          Length = 567

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 323 TTAVIISLPASGKVSCCISTSSTEKHLASRPLACTSSFLTGSTSSN 460
           T+  I S  +S K S   +TS+T   ++S   + TSS  + STSS+
Sbjct: 331 TSTTISSSSSSSKTSKTSTTSTTSSSISSTTSSTTSSTSSSSTSSS 376


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,508,617
Number of Sequences: 219361
Number of extensions: 933211
Number of successful extensions: 3015
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3013
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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