ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl43c04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187605.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3744 Score = 69.9 bits (35), Expect = 7e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 307 tagctccttgcccatcaccaccgccgtcatcatcagcttaccggcgtccggaaaagtgtc 366 ||||||||||||||| | |||||| |||||||||| ||||| || || || ||| | Sbjct: 3699 tagctccttgcccattatcaccgcggtcatcatcaatttacccgcatcagggaaatcctt 3640 Query: 367 gtgctgcatcagcacctcctccaccgagaagcacttagcctccaggcctctcgcgtgcac 426 ||||||||||||||| |||||||| |||| || | |||||| ||||||| ||||| Sbjct: 3639 gtgctgcatcagcacttcctccactgagagacatctgccctccaagcctctcagatgcac 3580 Query: 427 gtcctctttcctcacgggcagcacctcctcgaacg 461 ||| |||||| |||| |||||||| ||||| |||| Sbjct: 3579 gtcttctttcttcacaggcagcacgtcctcaaacg 3545
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 7e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 307 tagctccttgcccatcaccaccgccgtcatcatcagcttaccggcgtccggaaaagtgtc 366 ||||||||||||||| | |||||| |||||||||| ||||| || || || ||| | Sbjct: 6548638 tagctccttgcccattatcaccgcggtcatcatcaatttacccgcatcagggaaatcctt 6548579 Query: 367 gtgctgcatcagcacctcctccaccgagaagcacttagcctccaggcctctcgcgtgcac 426 ||||||||||||||| |||||||| |||| || | |||||| ||||||| ||||| Sbjct: 6548578 gtgctgcatcagcacttcctccactgagagacatctgccctccaagcctctcagatgcac 6548519 Query: 427 gtcctctttcctcacgggcagcacctcctcgaacg 461 ||| |||||| |||| |||||||| ||||| |||| Sbjct: 6548518 gtcttctttcttcacaggcagcacgtcctcaaacg 6548484
>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0081P02, complete sequence Length = 162425 Score = 69.9 bits (35), Expect = 7e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 307 tagctccttgcccatcaccaccgccgtcatcatcagcttaccggcgtccggaaaagtgtc 366 ||||||||||||||| | |||||| |||||||||| ||||| || || || ||| | Sbjct: 91400 tagctccttgcccattatcaccgcggtcatcatcaatttacccgcatcagggaaatcctt 91341 Query: 367 gtgctgcatcagcacctcctccaccgagaagcacttagcctccaggcctctcgcgtgcac 426 ||||||||||||||| |||||||| |||| || | |||||| ||||||| ||||| Sbjct: 91340 gtgctgcatcagcacttcctccactgagagacatctgccctccaagcctctcagatgcac 91281 Query: 427 gtcctctttcctcacgggcagcacctcctcgaacg 461 ||| |||||| |||| |||||||| ||||| |||| Sbjct: 91280 gtcttctttcttcacaggcagcacgtcctcaaacg 91246
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 7e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 307 tagctccttgcccatcaccaccgccgtcatcatcagcttaccggcgtccggaaaagtgtc 366 ||||||||||||||| | |||||| |||||||||| ||||| || || || ||| | Sbjct: 6547851 tagctccttgcccattatcaccgcggtcatcatcaatttacccgcatcagggaaatcctt 6547792 Query: 367 gtgctgcatcagcacctcctccaccgagaagcacttagcctccaggcctctcgcgtgcac 426 ||||||||||||||| |||||||| |||| || | |||||| ||||||| ||||| Sbjct: 6547791 gtgctgcatcagcacttcctccactgagagacatctgccctccaagcctctcagatgcac 6547732 Query: 427 gtcctctttcctcacgggcagcacctcctcgaacg 461 ||| |||||| |||| |||||||| ||||| |||| Sbjct: 6547731 gtcttctttcttcacaggcagcacgtcctcaaacg 6547697
>dbj|AK073981.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076C04, full insert sequence Length = 4184 Score = 69.9 bits (35), Expect = 7e-09 Identities = 125/155 (80%) Strand = Plus / Minus Query: 307 tagctccttgcccatcaccaccgccgtcatcatcagcttaccggcgtccggaaaagtgtc 366 ||||||||||||||| | |||||| |||||||||| ||||| || || || ||| | Sbjct: 3931 tagctccttgcccattatcaccgcggtcatcatcaatttacccgcatcagggaaatcctt 3872 Query: 367 gtgctgcatcagcacctcctccaccgagaagcacttagcctccaggcctctcgcgtgcac 426 ||||||||||||||| |||||||| |||| || | |||||| ||||||| ||||| Sbjct: 3871 gtgctgcatcagcacttcctccactgagagacatctgccctccaagcctctcagatgcac 3812 Query: 427 gtcctctttcctcacgggcagcacctcctcgaacg 461 ||| |||||| |||| |||||||| ||||| |||| Sbjct: 3811 gtcttctttcttcacaggcagcacgtcctcaaacg 3777
>gb|AC107079.6| Homo sapiens BAC clone RP11-585E12 from 2, complete sequence Length = 133304 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 atatttcaattttcaaaacaca 42 |||||||||||||||||||||| Sbjct: 33735 atatttcaattttcaaaacaca 33756
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 319 catcaccaccgccgtcatcat 339 ||||||||||||||||||||| Sbjct: 1531998 catcaccaccgccgtcatcat 1531978
>gb|AC093543.8| Trypanosoma brucei chromosome 3 clone RPCI93-5L5, complete sequence Length = 148711 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 319 catcaccaccgccgtcatcat 339 ||||||||||||||||||||| Sbjct: 106210 catcaccaccgccgtcatcat 106190
>ref|XM_821830.1| Trypanosoma brucei TREU927 clone RPCI93-5L5 hypothetical protein (Tb927.3.5470) partial mRNA Length = 528 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 319 catcaccaccgccgtcatcat 339 ||||||||||||||||||||| Sbjct: 178 catcaccaccgccgtcatcat 158
>emb|AJ310930.1|PRA310930 Phlebia radiata mRNA for manganese peroxidase (mnp3 gene) Length = 1089 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 catcagcacctcctccaccga 393 ||||||||||||||||||||| Sbjct: 277 catcagcacctcctccaccga 257
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 accaccgccgtcatcatcagc 343 ||||||||||||||||||||| Sbjct: 4915814 accaccgccgtcatcatcagc 4915834
>gb|AC155885.2| Medicago truncatula chromosome 7 BAC clone mth2-10p23, complete sequence Length = 116747 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 cagtacatcatagagtaaaaa 140 ||||||||||||||||||||| Sbjct: 103321 cagtacatcatagagtaaaaa 103301
>emb|AL935209.14| Zebrafish DNA sequence from clone DKEY-61N16, complete sequence Length = 162012 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 105 gccgacaatggacatcagtacatca 129 |||||||||||||| |||||||||| Sbjct: 90169 gccgacaatggacaacagtacatca 90145
>gb|AC111129.12| Mus musculus chromosome 5, clone RP23-339H11, complete sequence Length = 196458 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 acttagcctccaggcctctc 418 |||||||||||||||||||| Sbjct: 54368 acttagcctccaggcctctc 54387
>gb|AC159440.1| Trypanosoma brucei chromosome 3 clone RPCI93-2H15, complete sequence Length = 152294 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 atcaccaccgccgtcatcat 339 |||||||||||||||||||| Sbjct: 31420 atcaccaccgccgtcatcat 31401
>ref|XM_361112.1| Magnaporthe grisea 70-15 hypothetical protein (MG03655.4) partial mRNA Length = 2271 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 cagcacctcctcgaacgtgc 464 |||||||||||||||||||| Sbjct: 1000 cagcacctcctcgaacgtgc 981
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 cttgcccatcaccaccgccg 332 |||||||||||||||||||| Sbjct: 3495537 cttgcccatcaccaccgccg 3495556
>gb|AC102622.7| Mus musculus chromosome 3, clone RP23-434O10, complete sequence Length = 237899 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ccatcaccaccgccgtcatcatca 341 ||||||||||| |||||||||||| Sbjct: 223315 ccatcaccaccaccgtcatcatca 223338
>ref|XM_544643.2| PREDICTED: Canis familiaris similar to StAR-related lipid transfer protein 9 (StARD9) (START domain-containing protein 9) (LOC487519), mRNA Length = 13338 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 atcagtacatcatagagtaa 137 |||||||||||||||||||| Sbjct: 5061 atcagtacatcatagagtaa 5080
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end Length = 225394 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 caccaccgccgtcatcatca 341 |||||||||||||||||||| Sbjct: 202016 caccaccgccgtcatcatca 201997
>emb|Z81556.1|CEF58G1 Caenorhabditis elegans Cosmid F58G1, complete sequence Length = 37666 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 ccatcaccaccgccgtcatc 337 |||||||||||||||||||| Sbjct: 24617 ccatcaccaccgccgtcatc 24636
>emb|CR731756.2|CNS0GRKH Tetraodon nigroviridis full-length cDNA Length = 1219 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 316 gcccatcaccaccgccgtcatcatcagc 343 ||||| |||||||||||| ||||||||| Sbjct: 349 gcccagcaccaccgccgtgatcatcagc 322
>gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, complete sequence Length = 197964 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 acttagcctccaggcctctc 418 |||||||||||||||||||| Sbjct: 181340 acttagcctccaggcctctc 181359
>gb|AC150706.4| Medicago truncatula clone mth2-132l18, complete sequence Length = 105472 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 atttcaattttcaaaacaca 42 |||||||||||||||||||| Sbjct: 57512 atttcaattttcaaaacaca 57493
>emb|AL591069.5| Human DNA sequence from clone RP11-72O9 on chromosome 6q25.2-26 Contains the 3' end of the SSLC22A3 gene for solute carrier family 22 (extraneuronal monoamine transporter), member 3 (extraneuronal monoamine transporter solute carrier family 22 (organic cation transporter), member 3(EMT, EMTh, OCT3)), the APOARGC gene for apolipoprotein (a) related gene C and a plasminogen (PLG) pseudogene, complete sequence Length = 162083 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 ccatcaccaccgccgtcatcatca 341 |||||||||||||| ||||||||| Sbjct: 104974 ccatcaccaccgccatcatcatca 104951
>emb|AL445438.27| Human DNA sequence from clone RP11-427B20 on chromosome 1 Contains two CpG islands, complete sequence Length = 108271 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 tggccatcacaagagtaaaa 171 |||||||||||||||||||| Sbjct: 98473 tggccatcacaagagtaaaa 98492
>emb|AL445259.10| Human DNA sequence from clone RP11-532N4 on chromosome 6 Contains part of the TRDN gene for triadin (TDN, TRIADIN) (one variant encodes protein sequence similar to hypothetical protein from macaque) and a novel gene, complete sequence Length = 134687 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 aaaaaatattgacgcatatttcaa 29 |||||||||||| ||||||||||| Sbjct: 98654 aaaaaatattgaagcatatttcaa 98677
>emb|CR936848.6| Mouse DNA sequence from clone DN-315E9 on chromosome 3, complete sequence Length = 144824 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 ccatcaccaccgccgtcatcatca 341 ||||||||||| |||||||||||| Sbjct: 90119 ccatcaccaccaccgtcatcatca 90096
>gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete sequence Length = 159149 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 atatttcaattttcaaaaca 40 |||||||||||||||||||| Sbjct: 62881 atatttcaattttcaaaaca 62900
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gacaatggacatcagtacat 127 |||||||||||||||||||| Sbjct: 2027583 gacaatggacatcagtacat 2027602
>gb|AC010633.8| Homo sapiens chromosome 5 clone CTD-2317K6, complete sequence Length = 195931 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 attcagccagcctacataaa 241 |||||||||||||||||||| Sbjct: 122946 attcagccagcctacataaa 122927
>gb|AC008964.6|AC008964 Homo sapiens chromosome 5 clone CTD-2360A17, complete sequence Length = 143841 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 attcagccagcctacataaa 241 |||||||||||||||||||| Sbjct: 35994 attcagccagcctacataaa 35975
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 ccttgcccatcaccaccgccgtca 335 ||||||||||||||| |||||||| Sbjct: 67677 ccttgcccatcaccagcgccgtca 67654
>gb|AC161625.5| Pan troglodytes BAC clone CH251-98N20 from chromosome unknown, complete sequence Length = 179977 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 ccatcaccaccgccgtcatcatca 341 ||||||||||| |||||||||||| Sbjct: 31808 ccatcaccaccaccgtcatcatca 31785
>gb|AC105312.2| Homo sapiens BAC clone RP11-17C4 from 4, complete sequence Length = 127437 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 267 agtccatgtccacaggctcatctg 290 |||||||||||| ||||||||||| Sbjct: 105300 agtccatgtccaaaggctcatctg 105277
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gcccatcaccaccgccgtca 335 |||||||||||||||||||| Sbjct: 8218664 gcccatcaccaccgccgtca 8218683
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 gtgctgcatcagcacctcctccac 390 |||||||||||||||||| ||||| Sbjct: 2663024 gtgctgcatcagcacctcttccac 2663001
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 aaccaaataactccgattgcatgg 210 ||||||| |||||||||||||||| Sbjct: 4460831 aaccaaacaactccgattgcatgg 4460808
>gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, complete sequence Length = 170634 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 catgtccacaggctcatctg 290 |||||||||||||||||||| Sbjct: 96423 catgtccacaggctcatctg 96404
>gb|DQ176432.1| Potamon ibericum prepro crustacean hyperglycemic hormone pericardial organ isoform mRNA, complete cds Length = 1873 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 ccatcaccaccgccgtcatc 337 |||||||||||||||||||| Sbjct: 111 ccatcaccaccgccgtcatc 92
>gb|DQ176431.1| Potamon ibericum prepro crustacean hyperglycemic hormone X organ isoform mRNA, complete cds Length = 1768 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 ccatcaccaccgccgtcatc 337 |||||||||||||||||||| Sbjct: 111 ccatcaccaccgccgtcatc 92
>gb|AC161433.5| Mus musculus chromosome 8, clone RP23-50F12, complete sequence Length = 253440 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ccatcaccaccgccgtcatcatca 341 ||||||||||| |||||||||||| Sbjct: 64055 ccatcaccaccaccgtcatcatca 64078 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ccatcaccaccgccgtcatcatca 341 ||||||||||| |||||||||||| Sbjct: 63992 ccatcaccaccaccgtcatcatca 64015
>emb|AL683824.8| Mouse DNA sequence from clone RP23-90O18 on chromosome 3, complete sequence Length = 233589 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 ccatcaccaccgccgtcatcatca 341 ||||||||||| |||||||||||| Sbjct: 56122 ccatcaccaccaccgtcatcatca 56099
>gb|AC120785.13| Mus musculus chromosome 8, clone RP23-336P3, complete sequence Length = 238405 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 ccatcaccaccgccgtcatcatca 341 ||||||||||| |||||||||||| Sbjct: 95914 ccatcaccaccaccgtcatcatca 95891 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 ccatcaccaccgccgtcatcatca 341 ||||||||||| |||||||||||| Sbjct: 95851 ccatcaccaccaccgtcatcatca 95828
>gb|L00676.1|SH1ULGNS Pseudorabies virus (Suid herpesvirus 1) UL18 through UL21 genes, complete cds and UL15 gene, 3' end Length = 9382 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 ccttgcccatcaccaccgccgtca 335 ||||||||||||||| |||||||| Sbjct: 3945 ccttgcccatcaccagcgccgtca 3922
>emb|AL732606.5| Mouse DNA sequence from clone RP23-271B17 on chromosome 11, complete sequence Length = 113285 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 catatttcaattttcaaaac 39 |||||||||||||||||||| Sbjct: 91341 catatttcaattttcaaaac 91322 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,168,637 Number of Sequences: 3902068 Number of extensions: 4168637 Number of successful extensions: 74936 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74645 Number of HSP's gapped (non-prelim): 286 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
