ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl43c03 |
|---|---|
| Clone Library Name | barley_pub |
>NEU2_LOXAF (P81768) Neurophysin 2 (Neurophysin-II) (E-NP)| Length = 92 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = -1 Query: 262 RCCKQKLCCG-----YVQYI*ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRV 104 RC +CCG +V A+ ++ QEE +P SG CG GR A + Sbjct: 20 RCFGPSICCGEELGCFVGT--AEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCYEE 77 Query: 103 SCITD 89 SC+T+ Sbjct: 78 SCVTE 82
>NEU2_HORSE (P01182) Neurophysin 2 (Fragment)| Length = 92 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = -1 Query: 262 RCCKQKLCCG-----YVQYI*ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRV 104 RC +CCG +V A+ ++ QEE +P SG CG GR A + Sbjct: 17 RCFGPSICCGDELGCFVGT--AEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCNDE 74 Query: 103 SCITD 89 SC+T+ Sbjct: 75 SCVTE 79
>NEU2_PIG (P01183) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)| [Contains: Lys-vasopressin; Neurophysin 2 (Neurophysin-I/-III); Copeptin] Length = 166 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = -1 Query: 262 RCCKQKLCCG-----YVQYI*ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRV 104 RC +CCG +V A+ ++ QEE +P SG CG GR A + Sbjct: 51 RCFGPSICCGDELGCFVGT--AEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCNDE 108 Query: 103 SCITD 89 SC+T+ Sbjct: 109 SCVTE 113
>NEU2_BOVIN (P01180) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)| [Contains: Arg-vasopressin; Neurophysin 2 (Neurophysin-II); Copeptin] Length = 166 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = -1 Query: 262 RCCKQKLCCG-----YVQYI*ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRV 104 RC +CCG +V A+ ++ QEE +P SG CG GR A + Sbjct: 51 RCFGPSICCGDELGCFVGT--AEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCNDE 108 Query: 103 SCITD 89 SC+T+ Sbjct: 109 SCVTE 113
>PGLR_PENGR (O93883) Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase)| Length = 376 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +1 Query: 226 VHTRSKAFACNSGVNAI*TGTQIWGQNHNYSLFTLGG 336 VH + A NSG N TG Q G H S+ ++GG Sbjct: 211 VHNQDDCLAVNSGTNVHFTGAQCTG-GHGISIGSVGG 246
>NEU2_BALPH (P01184) Vasopressin-neurophysin 2 precursor [Contains:| Arg-vasopressin; Neurophysin 2] (Fragment) Length = 107 Score = 27.3 bits (59), Expect = 9.4 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Frame = -1 Query: 262 RCCKQKLCCGYVQYI*---ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRVSC 98 RC +CCG A+ ++ QEE +P SG CG GR A + SC Sbjct: 32 RCFGPSICCGDELGCFMGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCNDESC 91 Query: 97 ITD 89 +T+ Sbjct: 92 VTE 94
>CHEB_CLOAB (Q97GZ3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 345 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +1 Query: 22 VTFISVWQKGIKHTMHCSKLPAY 90 + F S+ QKG+K+TM C L A+ Sbjct: 81 IVFSSISQKGMKYTMECLYLGAF 103
>FLAV_BUCAI (P57385) Flavodoxin| Length = 171 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 87 SWQFGTVHCVFDSFLPY*NKGHFS 16 +W +G V C +D FLP K +FS Sbjct: 56 TWYYGEVQCDWDDFLPTLKKINFS 79
>CHFR_MOUSE (Q810L3) Ubiquitin-protein ligase CHFR (EC 6.3.2.-) (Checkpoint| with forkhead and RING finger domains protein) Length = 664 Score = 27.3 bits (59), Expect = 9.4 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -3 Query: 74 EQCIVCLIPFCH 39 +QC VCL PFCH Sbjct: 508 QQCAVCLQPFCH 519
>CHFR_HUMAN (Q96EP1) Ubiquitin-protein ligase CHFR (EC 6.3.2.-) (Checkpoint| with forkhead and RING finger domains protein) Length = 664 Score = 27.3 bits (59), Expect = 9.4 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -3 Query: 74 EQCIVCLIPFCH 39 +QC VCL PFCH Sbjct: 508 QQCAVCLQPFCH 519
>SYG_STRCO (Q9L2H9) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 460 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = -2 Query: 306 ILSPYLGPSLDSIHPAVASKSFAAGMYSTYRLIR*NSRRRKQY 178 +LS +LGP+ DS A A G+++ + ++ SRR+ + Sbjct: 142 LLSTHLGPTQDSGSVAYLRPETAQGIFTNFAQVQTTSRRKPPF 184
>SYG_STRAW (Q82BR9) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 460 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = -2 Query: 306 ILSPYLGPSLDSIHPAVASKSFAAGMYSTYRLIR*NSRRRKQY 178 +LS +LGP+ DS A A G+++ + ++ SRR+ + Sbjct: 142 LLSTHLGPTQDSGSVAYLRPETAQGIFTNFAQVQQTSRRKPPF 184
>SP1_MOUSE (O89090) Transcription factor Sp1| Length = 784 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -3 Query: 206 DETAGGENNTSFTFKWNCGLWTDRESEMCNY 114 DETAGGE S + G T RE+ C Y Sbjct: 579 DETAGGEGENSSDLQPQAGRRTRREACTCPY 609
>Y2806_XANCP (Q8P708) UPF0042 protein XCC2806| Length = 282 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +3 Query: 63 NALFQIASLSVMQLTRRIVTHFAL 134 +A+ ++L+V QL RR+VT FAL Sbjct: 132 DAIIDTSALNVHQLRRRVVTEFAL 155
>NEU2_SHEEP (P01181) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)| [Contains: Arg-vasopressin; Neurophysin 2 (Neurophysin-III); Copeptin] (Fragment) Length = 147 Score = 27.3 bits (59), Expect = 9.4 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = -1 Query: 262 RCCKQKLCCG-----YVQYI*ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRV 104 RC +CCG +V A+ ++ QEE +P SG CG GR A + Sbjct: 32 RCFGPSICCGDELGCFVGT--AEALRCQEEIYLPSPCQSGQKPCGSGGRCAAAGICCNDE 89 Query: 103 SCITD 89 SC+T+ Sbjct: 90 SCVTE 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,925,579 Number of Sequences: 219361 Number of extensions: 1049559 Number of successful extensions: 2681 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2642 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2681 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
