Clone Name | rbastl43c03 |
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Clone Library Name | barley_pub |
>gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complete cds Length = 3338 Score = 624 bits (315), Expect = e-176 Identities = 336/343 (97%) Strand = Plus / Minus Query: 16 actgaagtgacctttatttcagtatggcaaaaaggaatcaaacacacaatgcactgttcc 75 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 3317 actgaagtgacctttatttcagtatggcagaaaggaatcaaacacacaatgcactgttcc 3258 Query: 76 aaattgccagcttatctgtgatgcaactaactcgacgcatagttacacatttcgctctcc 135 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3257 agattgccagcttatctgtgatgcaactaactcgacgcatagttacacatttcgctctcc 3198 Query: 136 ctgtcagtccacaatccacagttccacttaaacgtaaaactggtattgttttctcctcct 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3197 ctgtcagtccacaatccacagttccacttaaacgtaaaactggtattgttttctcctcct 3138 Query: 196 gctgtttcatcttatcagcctatatgtactgtacatacccgcagcaaagcttttgcttgc 255 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 3137 gctgtttcatcttatcagcctatatgtactgtacatacccgcagcagagcttttgcttgc 3078 Query: 256 aacagcggggtgaatgctatctaaactgggacccaaatatggggacaaaatcataattac 315 ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| Sbjct: 3077 aacagcggggtgaatgctatctagactgggacccagatatggtgacaaaatcataattac 3018 Query: 316 tccttattcacactgggtggatgacaaccccggggtagagatg 358 |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 3017 tccttattcacacttggtggatgacaaccccggggtagagatg 2975
>gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds, alternatively spliced Length = 3050 Score = 95.6 bits (48), Expect = 9e-17 Identities = 57/60 (95%) Strand = Plus / Minus Query: 299 gacaaaatcataattactccttattcacactgggtggatgacaaccccggggtagagatg 358 |||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| Sbjct: 3016 gacaaaatcataattactgcttattcacacttggtgggtgacaaccccggggtagagatg 2957
>emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chromosome 10 Contains two novel genes and three CpG islands, complete sequence Length = 158779 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 291 aatatggggacaaaatcataatt 313 ||||||||||||||||||||||| Sbjct: 142851 aatatggggacaaaatcataatt 142829
>emb|BX070512.1|CNS09QKK Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC7CE11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1038 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 ctatatgtactgtacataccc 235 ||||||||||||||||||||| Sbjct: 992 ctatatgtactgtacataccc 1012
>gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, complete sequence Length = 210968 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 acaaaatcataattactcct 319 |||||||||||||||||||| Sbjct: 94714 acaaaatcataattactcct 94733
>gb|AC115121.5| Mus musculus BAC clone RP23-204O13 from chromosome 19, complete sequence Length = 227154 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 tttatttcagtatggcaaaaagga 51 ||||||||||||||||| |||||| Sbjct: 170427 tttatttcagtatggcacaaagga 170404
>gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosome 9, complete sequence Length = 148114 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 aaactggtattgttttctcctcct 195 |||||||||||||||||| ||||| Sbjct: 147762 aaactggtattgttttcttctcct 147739
>gb|AC122928.4| Mus musculus BAC clone RP23-10G8 from 9, complete sequence Length = 205725 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 aaactggtattgttttctcctcct 195 |||||||||||||||||| ||||| Sbjct: 187413 aaactggtattgttttcttctcct 187436
>emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, complete sequence Length = 169191 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gccaaaacacaaactgaagt 23 |||||||||||||||||||| Sbjct: 115128 gccaaaacacaaactgaagt 115109
>emb|AL772329.14| Zebrafish DNA sequence from clone CH211-150D5 in linkage group 3, complete sequence Length = 163559 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aactgaagtgacctttattt 34 |||||||||||||||||||| Sbjct: 62684 aactgaagtgacctttattt 62665
>gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, complete sequence Length = 233984 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ctggtattgttttctcctcc 194 |||||||||||||||||||| Sbjct: 132846 ctggtattgttttctcctcc 132827
>emb|BX004964.9| Zebrafish DNA sequence from clone DKEY-7I4, complete sequence Length = 211018 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aactgaagtgacctttattt 34 |||||||||||||||||||| Sbjct: 182121 aactgaagtgacctttattt 182102
>gb|AY835963.1| Craseonycteris thonglongyai phospholipace C beta 4 (PLCB4) gene, 3' UTR Length = 299 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ccaaaacacaaactgaagtg 24 |||||||||||||||||||| Sbjct: 31 ccaaaacacaaactgaagtg 50 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,353,277 Number of Sequences: 3902068 Number of extensions: 3353277 Number of successful extensions: 78253 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78224 Number of HSP's gapped (non-prelim): 29 length of query: 358 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 336 effective length of database: 17,147,199,772 effective search space: 5761459123392 effective search space used: 5761459123392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)