ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complet... 624 e-176
2gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds,... 96 9e-17
3emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chro... 46 0.077
4emb|BX070512.1|CNS09QKK Single read from an extremity of a full-... 42 1.2
5gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, com... 40 4.8
6gb|AC115121.5| Mus musculus BAC clone RP23-204O13 from chromosom... 40 4.8
7gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosom... 40 4.8
8gb|AC122928.4| Mus musculus BAC clone RP23-10G8 from 9, complete... 40 4.8
9emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, ... 40 4.8
10emb|AL772329.14| Zebrafish DNA sequence from clone CH211-150D5 i... 40 4.8
11gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, compl... 40 4.8
12emb|BX004964.9| Zebrafish DNA sequence from clone DKEY-7I4, comp... 40 4.8
13gb|AY835963.1| Craseonycteris thonglongyai phospholipace C beta ... 40 4.8

>gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complete cds
          Length = 3338

 Score =  624 bits (315), Expect = e-176
 Identities = 336/343 (97%)
 Strand = Plus / Minus

                                                                        
Query: 16   actgaagtgacctttatttcagtatggcaaaaaggaatcaaacacacaatgcactgttcc 75
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3317 actgaagtgacctttatttcagtatggcagaaaggaatcaaacacacaatgcactgttcc 3258

                                                                        
Query: 76   aaattgccagcttatctgtgatgcaactaactcgacgcatagttacacatttcgctctcc 135
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3257 agattgccagcttatctgtgatgcaactaactcgacgcatagttacacatttcgctctcc 3198

                                                                        
Query: 136  ctgtcagtccacaatccacagttccacttaaacgtaaaactggtattgttttctcctcct 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3197 ctgtcagtccacaatccacagttccacttaaacgtaaaactggtattgttttctcctcct 3138

                                                                        
Query: 196  gctgtttcatcttatcagcctatatgtactgtacatacccgcagcaaagcttttgcttgc 255
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3137 gctgtttcatcttatcagcctatatgtactgtacatacccgcagcagagcttttgcttgc 3078

                                                                        
Query: 256  aacagcggggtgaatgctatctaaactgggacccaaatatggggacaaaatcataattac 315
            ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct: 3077 aacagcggggtgaatgctatctagactgggacccagatatggtgacaaaatcataattac 3018

                                                       
Query: 316  tccttattcacactgggtggatgacaaccccggggtagagatg 358
            |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3017 tccttattcacacttggtggatgacaaccccggggtagagatg 2975



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>gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds, alternatively
            spliced
          Length = 3050

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 57/60 (95%)
 Strand = Plus / Minus

                                                                        
Query: 299  gacaaaatcataattactccttattcacactgggtggatgacaaccccggggtagagatg 358
            |||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 3016 gacaaaatcataattactgcttattcacacttggtgggtgacaaccccggggtagagatg 2957



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>emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chromosome 10 Contains two
              novel genes and three CpG islands, complete sequence
          Length = 158779

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 291    aatatggggacaaaatcataatt 313
              |||||||||||||||||||||||
Sbjct: 142851 aatatggggacaaaatcataatt 142829



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>emb|BX070512.1|CNS09QKK Single read from an extremity of a full-length cDNA clone made from
            Anopheles gambiae total adult females. 5-PRIME end of
            clone FK0AAC7CE11 of strain 6-9 of Anopheles gambiae
            (African malaria mosquito)
          Length = 1038

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 215  ctatatgtactgtacataccc 235
            |||||||||||||||||||||
Sbjct: 992  ctatatgtactgtacataccc 1012



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>gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, complete sequence
          Length = 210968

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   acaaaatcataattactcct 319
             ||||||||||||||||||||
Sbjct: 94714 acaaaatcataattactcct 94733



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>gb|AC115121.5| Mus musculus BAC clone RP23-204O13 from chromosome 19, complete sequence
          Length = 227154

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 28     tttatttcagtatggcaaaaagga 51
              ||||||||||||||||| ||||||
Sbjct: 170427 tttatttcagtatggcacaaagga 170404



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>gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosome 9, complete sequence
          Length = 148114

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 172    aaactggtattgttttctcctcct 195
              |||||||||||||||||| |||||
Sbjct: 147762 aaactggtattgttttcttctcct 147739



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>gb|AC122928.4| Mus musculus BAC clone RP23-10G8 from 9, complete sequence
          Length = 205725

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 172    aaactggtattgttttctcctcct 195
              |||||||||||||||||| |||||
Sbjct: 187413 aaactggtattgttttcttctcct 187436



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>emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, complete sequence
          Length = 169191

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      gccaaaacacaaactgaagt 23
              ||||||||||||||||||||
Sbjct: 115128 gccaaaacacaaactgaagt 115109



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>emb|AL772329.14| Zebrafish DNA sequence from clone CH211-150D5 in linkage group 3,
             complete sequence
          Length = 163559

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    aactgaagtgacctttattt 34
             ||||||||||||||||||||
Sbjct: 62684 aactgaagtgacctttattt 62665



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>gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, complete sequence
          Length = 233984

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    ctggtattgttttctcctcc 194
              ||||||||||||||||||||
Sbjct: 132846 ctggtattgttttctcctcc 132827



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>emb|BX004964.9| Zebrafish DNA sequence from clone DKEY-7I4, complete sequence
          Length = 211018

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     aactgaagtgacctttattt 34
              ||||||||||||||||||||
Sbjct: 182121 aactgaagtgacctttattt 182102



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>gb|AY835963.1| Craseonycteris thonglongyai phospholipace C beta 4 (PLCB4) gene,
          3' UTR
          Length = 299

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 5  ccaaaacacaaactgaagtg 24
          ||||||||||||||||||||
Sbjct: 31 ccaaaacacaaactgaagtg 50


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,353,277
Number of Sequences: 3902068
Number of extensions: 3353277
Number of successful extensions: 78253
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78224
Number of HSP's gapped (non-prelim): 29
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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