ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK061883.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
3dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
4dbj|AK120672.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
5dbj|AK120106.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
6dbj|AK067542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
7ref|NM_189401.1| Oryza sativa (japonica cultivar-group), predic... 222 6e-55
8gb|AY111552.1| Zea mays CL47233_1 mRNA sequence 149 8e-33
9gb|AC154848.2| Mus musculus BAC clone RP23-38J19 from 13, comple... 44 0.33
10gb|AC133159.3| Mus musculus BAC clone RP24-503F11 from 13, compl... 44 0.33
11gb|AC116696.20| Mus musculus chromosome 3, clone RP24-425N23, co... 42 1.3
12gb|AY242100.1| Sus scrofa LW463 tyrosine hydroxylase (TH) gene, ... 42 1.3
13emb|AL450992.17| Human DNA sequence from clone RP11-139D23 on ch... 42 1.3
14emb|AL356915.19| Human DNA sequence from clone RP11-179F17 on ch... 42 1.3
15gb|AC016394.13| Homo sapiens chromosome 10 clone RP11-152N13, co... 42 1.3
16gb|AC166362.5| Mus musculus BAC clone RP23-299O17 from chromosom... 40 5.2
17gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.2
18gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, comp... 40 5.2
19gb|BC079754.1| Xenopus laevis MGC84754 protein, mRNA (cDNA clone... 40 5.2
20gb|AC164876.3| Mus musculus BAC clone RP23-408K8 from chromosome... 40 5.2
21ref|XM_572999.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 5.2
22gb|AC141430.3| Mus musculus BAC clone RP23-95O14 from chromosome... 40 5.2
23gb|AC129201.3| Mus musculus BAC clone RP24-224A15 from chromosom... 40 5.2
24gb|AC165947.3| Mus musculus BAC clone RP24-501G23 from chromosom... 40 5.2
25ref|XM_500125.1| Yarrowia lipolytica CLIB122, YALI0A16291g predi... 40 5.2
26emb|BX323061.6| Mouse DNA sequence from clone RP24-267L10 on chr... 40 5.2
27emb|BX088708.14| Zebrafish DNA sequence from clone CH211-196B14 ... 40 5.2
28gb|AC122685.9| Homo sapiens 12 BAC RP11-165I14 (Roswell Park Can... 40 5.2
29gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswell Park Canc... 40 5.2
30gb|DQ302024.1| Uncultured archaeon clone 4H3_ar23 16S ribosomal ... 40 5.2
31emb|BX247948.4| Zebrafish DNA sequence from clone DKEY-34E4 in l... 40 5.2
32dbj|AK130924.1| Homo sapiens cDNA FLJ27414 fis, clone WMC05333 40 5.2
33gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, co... 40 5.2
34gb|AC138119.5| Mus musculus BAC clone RP23-307D8 from chromosome... 40 5.2
35gb|AC174780.2| Mus musculus BAC clone RP23-92D22 from chromosome... 40 5.2
36gb|AC140842.4| Mus musculus BAC clone RP24-390F5 from chromosome... 40 5.2
37gb|AC166054.3| Mus musculus BAC clone RP24-79B1 from chromosome ... 40 5.2
38gb|AC141559.4| Mus musculus BAC clone RP24-341O14 from 5, comple... 40 5.2
39emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 5.2
40gb|AC172105.1| Mus musculus BAC clone RP24-225O2 from chromosome... 40 5.2
41emb|AL358332.3|CNS05TE3 Human chromosome 14 DNA sequence BAC R-2... 40 5.2 
>dbj|AK061883.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F02, full
            insert sequence
          Length = 1381

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Minus

                                                                        
Query: 136  ccatcaaggagaaccgaaaccgccgccaccgggagggaggatctgaaaaacctcaccagc 195
            |||||||||||| || ||||| || ||||| |||| ||| ||||||| || |||||||||
Sbjct: 1193 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 1134

                                                                        
Query: 196  attaactgggacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
            ||||||    || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 1133 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 1074

                                                                        
Query: 256  atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcacccg 315
            ||||||||| ||||| || ||||||   ||||||||||||||||||||||||||||||| 
Sbjct: 1073 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccct 1014

                                                                        
Query: 316  cctctcaaaaagaatgctcacaacaacaggccggcggaattcaatctcccttacaaggcc 375
             |||||  ||||||||||||||||||||||| |||  ||||||||||| || ||||||||
Sbjct: 1013 tctctctgaaagaatgctcacaacaacaggctggcaaaattcaatctctctcacaaggcc 954

                       
Query: 376  atcaccgcctc 386
            |||||| ||||
Sbjct: 953  atcaccacctc 943
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Plus

                                                                            
Query: 136      ccatcaaggagaaccgaaaccgccgccaccgggagggaggatctgaaaaacctcaccagc 195
                |||||||||||| || ||||| || ||||| |||| ||| ||||||| || |||||||||
Sbjct: 42586004 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 42586063

                                                                            
Query: 196      attaactgggacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
                ||||||    || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 42586064 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 42586123

                                                                            
Query: 256      atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcacccg 315
                ||||||||| ||||| || ||||||   ||||||||||||||||||||||||||||||| 
Sbjct: 42586124 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccct 42586183

                                                                            
Query: 316      cctctcaaaaagaatgctcacaacaacaggccggcggaattcaatctcccttacaaggcc 375
                 |||||  ||||||||||||||||||||||| |||  ||||||||||| || ||||||||
Sbjct: 42586184 tctctctgaaagaatgctcacaacaacaggctggcaaaattcaatctctctcacaaggcc 42586243

                           
Query: 376      atcaccgcctc 386
                |||||| ||||
Sbjct: 42586244 atcaccacctc 42586254
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>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0458E05
          Length = 193577

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Plus

                                                                          
Query: 136    ccatcaaggagaaccgaaaccgccgccaccgggagggaggatctgaaaaacctcaccagc 195
              |||||||||||| || ||||| || ||||| |||| ||| ||||||| || |||||||||
Sbjct: 106887 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 106946

                                                                          
Query: 196    attaactgggacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
              ||||||    || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 106947 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 107006

                                                                          
Query: 256    atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcacccg 315
              ||||||||| ||||| || ||||||   ||||||||||||||||||||||||||||||| 
Sbjct: 107007 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccct 107066

                                                                          
Query: 316    cctctcaaaaagaatgctcacaacaacaggccggcggaattcaatctcccttacaaggcc 375
               |||||  ||||||||||||||||||||||| |||  ||||||||||| || ||||||||
Sbjct: 107067 tctctctgaaagaatgctcacaacaacaggctggcaaaattcaatctctctcacaaggcc 107126

                         
Query: 376    atcaccgcctc 386
              |||||| ||||
Sbjct: 107127 atcaccacctc 107137
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>dbj|AK120672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160L10, full
            insert sequence
          Length = 4082

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Minus

                                                                        
Query: 136  ccatcaaggagaaccgaaaccgccgccaccgggagggaggatctgaaaaacctcaccagc 195
            |||||||||||| || ||||| || ||||| |||| ||| ||||||| || |||||||||
Sbjct: 1584 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 1525

                                                                        
Query: 196  attaactgggacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
            ||||||    || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 1524 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 1465

                                                                        
Query: 256  atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcacccg 315
            ||||||||| ||||| || ||||||   ||||||||||||||||||||||||||||||| 
Sbjct: 1464 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccct 1405

                                                                        
Query: 316  cctctcaaaaagaatgctcacaacaacaggccggcggaattcaatctcccttacaaggcc 375
             |||||  ||||||||||||||||||||||| |||  ||||||||||| || ||||||||
Sbjct: 1404 tctctctgaaagaatgctcacaacaacaggctggcaaaattcaatctctctcacaaggcc 1345

                       
Query: 376  atcaccgcctc 386
            |||||| ||||
Sbjct: 1344 atcaccacctc 1334
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>dbj|AK120106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023K07, full
            insert sequence
          Length = 5354

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Minus

                                                                        
Query: 136  ccatcaaggagaaccgaaaccgccgccaccgggagggaggatctgaaaaacctcaccagc 195
            |||||||||||| || ||||| || ||||| |||| ||| ||||||| || |||||||||
Sbjct: 4008 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 3949

                                                                        
Query: 196  attaactgggacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
            ||||||    || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 3948 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 3889

                                                                        
Query: 256  atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcacccg 315
            ||||||||| ||||| || ||||||   ||||||||||||||||||||||||||||||| 
Sbjct: 3888 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccct 3829

                                                                        
Query: 316  cctctcaaaaagaatgctcacaacaacaggccggcggaattcaatctcccttacaaggcc 375
             |||||  ||||||||||||||||||||||| |||  ||||||||||| || ||||||||
Sbjct: 3828 tctctctgaaagaatgctcacaacaacaggctggcaaaattcaatctctctcacaaggcc 3769

                       
Query: 376  atcaccgcctc 386
            |||||| ||||
Sbjct: 3768 atcaccacctc 3758
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>dbj|AK067542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110L13, full
            insert sequence
          Length = 4080

 Score =  228 bits (115), Expect = 1e-56
 Identities = 217/251 (86%)
 Strand = Plus / Minus

                                                                        
Query: 136  ccatcaaggagaaccgaaaccgccgccaccgggagggaggatctgaaaaacctcaccagc 195
            |||||||||||| || ||||| || ||||| |||| ||| ||||||| || |||||||||
Sbjct: 3975 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 3916

                                                                        
Query: 196  attaactgggacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
            ||||||    || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 3915 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 3856

                                                                        
Query: 256  atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcacccg 315
            ||||||||| ||||| || ||||||   ||||||||||||||||||||||||||||||| 
Sbjct: 3855 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcacccc 3796

                                                                        
Query: 316  cctctcaaaaagaatgctcacaacaacaggccggcggaattcaatctcccttacaaggcc 375
             |||||  ||||||||||||||||||||||| |||  ||||||||||| || ||||||||
Sbjct: 3795 tctctctgaaagaatgctcacaacaacaggctggcaaaattcaatctctctcacaaggcc 3736

                       
Query: 376  atcaccgcctc 386
            |||||| ||||
Sbjct: 3735 atcaccacctc 3725
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>ref|NM_189401.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3774

 Score =  222 bits (112), Expect = 6e-55
 Identities = 214/248 (86%)
 Strand = Plus / Minus

                                                                        
Query: 139  tcaaggagaaccgaaaccgccgccaccgggagggaggatctgaaaaacctcaccagcatt 198
            ||||||||| || ||||| || ||||| |||| ||| ||||||| || ||||||||||||
Sbjct: 3774 tcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagcatt 3715

                                                                        
Query: 199  aactgggacggtattcttccctccaaggtaaactctgcgaccatctttcctgactagata 258
            |||    || || ||||||||||||||||||||||| |||||||||||| |||| |||||
Sbjct: 3714 aaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgagata 3655

                                                                        
Query: 259  gtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcacccgcct 318
            |||||| ||||| || ||||||   |||||||||||||||||||||||||||||||  ||
Sbjct: 3654 gtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcacccttct 3595

                                                                        
Query: 319  ctcaaaaagaatgctcacaacaacaggccggcggaattcaatctcccttacaaggccatc 378
            |||  ||||||||||||||||||||||| |||  ||||||||||| || |||||||||||
Sbjct: 3594 ctctgaaagaatgctcacaacaacaggctggcaaaattcaatctctctcacaaggccatc 3535

                    
Query: 379  accgcctc 386
            ||| ||||
Sbjct: 3534 accacctc 3527
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>gb|AY111552.1| Zea mays CL47233_1 mRNA sequence
          Length = 700

 Score =  149 bits (75), Expect = 8e-33
 Identities = 150/175 (85%)
 Strand = Plus / Plus

                                                                       
Query: 212 ttcttccctccaaggtaaactctgcgaccatctttcctgactagatagtttgcgccacga 271
           ||||| |||||||||||||   | | ||||||||  ||||||| ||||||||| ||||||
Sbjct: 372 ttctttcctccaaggtaaatctttctaccatcttctctgactaaatagtttgcaccacga 431

                                                                       
Query: 272 gctccattttcccctcccttcagtcccctgggagcatgcacccgcctctcaaaaagaatg 331
            |||||| |   ||||| || ||||||||||||||||||||||| |||||| | |||| |
Sbjct: 432 tctccatctcgtcctcctttgagtcccctgggagcatgcacccgtctctcagatagaacg 491

                                                                  
Query: 332 ctcacaacaacaggccggcggaattcaatctcccttacaaggccatcaccgcctc 386
           |||||||||| |||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct: 492 ctcacaacaataggccgccggaactcaatctcccttacaaggccatcaccacctc 546
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>gb|AC154848.2| Mus musculus BAC clone RP23-38J19 from 13, complete sequence
          Length = 140465

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 100   tgtgtaaatagaaaacaaggcagatgatta 129
             ||||||||||||||||||| ||||| ||||
Sbjct: 21547 tgtgtaaatagaaaacaagacagattatta 21576
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>gb|AC133159.3| Mus musculus BAC clone RP24-503F11 from 13, complete sequence
          Length = 156151

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 100    tgtgtaaatagaaaacaaggcagatgatta 129
              ||||||||||||||||||| ||||| ||||
Sbjct: 140183 tgtgtaaatagaaaacaagacagattatta 140212
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>gb|AC116696.20| Mus musculus chromosome 3, clone RP24-425N23, complete sequence
          Length = 168053

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 90    agctttattctgtgtaaatagaaaa 114
             |||||||||||||| ||||||||||
Sbjct: 70512 agctttattctgtggaaatagaaaa 70536
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>gb|AY242100.1| Sus scrofa LW463 tyrosine hydroxylase (TH) gene, exon 14 and partial
             cds; preproinsulin (INS) gene, complete cds; and
             insulin-like growth factor 2 preproprotein (IGF2) gene,
             complete cds, alternatively spliced
          Length = 28649

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 155   ccgccgccaccgggagggagg 175
             |||||||||||||||||||||
Sbjct: 26513 ccgccgccaccgggagggagg 26493
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>emb|AL450992.17| Human DNA sequence from clone RP11-139D23 on chromosome 1 Contains two
             novel genes (FLJ37964), the gene for C-terminal modulator
             protein (CTMP), a keratin 8 (KRT8) pseudogene, the S100A10
             gene for S100 calcium binding protein A10 (annexin II
             ligand, calpactin I, light polypeptide (p11)), the 5' end
             of a novel gene, a novel pseudogene and a CpG island,
             complete sequence
          Length = 185447

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    cctcaaaagcatcgataacag 59
             |||||||||||||||||||||
Sbjct: 71198 cctcaaaagcatcgataacag 71178
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>emb|AL356915.19| Human DNA sequence from clone RP11-179F17 on chromosome 13 Contains the
              5' end of the FLT3 gene for fms-related tyrosine kinase 3,
              a novel gene, a eukaryotic translation elongation factor 1
              alpha 1 pseudogene, a novel pseudogene and two CpG islands,
              complete sequence
          Length = 194520

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 94     ttattctgtgtaaatagaaaa 114
              |||||||||||||||||||||
Sbjct: 188031 ttattctgtgtaaatagaaaa 188051
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>gb|AC016394.13| Homo sapiens chromosome 10 clone RP11-152N13, complete sequence
          Length = 149726

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 274   tccattttcccctcccttcag 294
             |||||||||||||||||||||
Sbjct: 10223 tccattttcccctcccttcag 10243
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>gb|AC166362.5| Mus musculus BAC clone RP23-299O17 from chromosome 5, complete sequence
          Length = 188276

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     ccaaataatgtatgtgcaag 91
              ||||||||||||||||||||
Sbjct: 131216 ccaaataatgtatgtgcaag 131197



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    ccaaataatgtatgtgcaag 91
             ||||||||||||||||||||
Sbjct: 53092 ccaaataatgtatgtgcaag 53073
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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
              sequence
          Length = 1178688

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    cgagctccattttcccctcc 288
              ||||||||||||||||||||
Sbjct: 709584 cgagctccattttcccctcc 709565
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>gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, complete sequence
          Length = 206729

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    ctccattttcccctcccttc 292
              ||||||||||||||||||||
Sbjct: 198107 ctccattttcccctcccttc 198126
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>gb|BC079754.1| Xenopus laevis MGC84754 protein, mRNA (cDNA clone MGC:84754
            IMAGE:6950186), complete cds
          Length = 3305

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  ggtaaactctgcgaccatct 244
            ||||||||||||||||||||
Sbjct: 1228 ggtaaactctgcgaccatct 1247
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>gb|AC164876.3| Mus musculus BAC clone RP23-408K8 from chromosome 5, complete sequence
          Length = 204467

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     ccaaataatgtatgtgcaag 91
              ||||||||||||||||||||
Sbjct: 156434 ccaaataatgtatgtgcaag 156415
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>ref|XM_572999.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNI02650) partial mRNA
          Length = 1733

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  cgagctccattttcccctcc 288
            ||||||||||||||||||||
Sbjct: 1186 cgagctccattttcccctcc 1167
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>gb|AC141430.3| Mus musculus BAC clone RP23-95O14 from chromosome 5, complete sequence
          Length = 208771

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    ccaaataatgtatgtgcaag 91
             ||||||||||||||||||||
Sbjct: 27704 ccaaataatgtatgtgcaag 27685
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>gb|AC129201.3| Mus musculus BAC clone RP24-224A15 from chromosome 5, complete sequence
          Length = 147253

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     ccaaataatgtatgtgcaag 91
              ||||||||||||||||||||
Sbjct: 134093 ccaaataatgtatgtgcaag 134112
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>gb|AC165947.3| Mus musculus BAC clone RP24-501G23 from chromosome 5, complete sequence
          Length = 152047

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     ccaaataatgtatgtgcaag 91
              ||||||||||||||||||||
Sbjct: 140540 ccaaataatgtatgtgcaag 140521



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    ccaaataatgtatgtgcaag 91
             ||||||||||||||||||||
Sbjct: 62305 ccaaataatgtatgtgcaag 62286
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>ref|XM_500125.1| Yarrowia lipolytica CLIB122, YALI0A16291g predicted mRNA
          Length = 2436

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  ccgaaaccgccgccaccggg 168
            ||||||||||||||||||||
Sbjct: 1211 ccgaaaccgccgccaccggg 1230
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>emb|BX323061.6| Mouse DNA sequence from clone RP24-267L10 on chromosome 11 Contains
             part of a novel gene and a CpG island, complete sequence
          Length = 137694

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    taccaaataatgtatgtgca 89
             ||||||||||||||||||||
Sbjct: 67248 taccaaataatgtatgtgca 67267
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>emb|BX088708.14| Zebrafish DNA sequence from clone CH211-196B14 in linkage group 3,
             complete sequence
          Length = 193659

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ctgtgtaaatagaaaacaag 118
             ||||||||||||||||||||
Sbjct: 63625 ctgtgtaaatagaaaacaag 63644
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>gb|AC122685.9| Homo sapiens 12 BAC RP11-165I14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 106673

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    ttattctgtgtaaatagaaa 113
             ||||||||||||||||||||
Sbjct: 51469 ttattctgtgtaaatagaaa 51450
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>gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 193035

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   ctccattttcccctcccttc 292
             ||||||||||||||||||||
Sbjct: 20595 ctccattttcccctcccttc 20576
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>gb|DQ302024.1| Uncultured archaeon clone 4H3_ar23 16S ribosomal RNA gene, partial
           sequence
          Length = 867

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  gcatcgataacagctgggac 66
           ||||||||||||||||||||
Sbjct: 770 gcatcgataacagctgggac 751
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>emb|BX247948.4| Zebrafish DNA sequence from clone DKEY-34E4 in linkage group 5,
             complete sequence
          Length = 131707

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 181   aaaaacctcaccagcattaactgg 204
             ||||||||||| ||||||||||||
Sbjct: 82315 aaaaacctcacaagcattaactgg 82338
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>dbj|AK130924.1| Homo sapiens cDNA FLJ27414 fis, clone WMC05333
          Length = 1163

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 275  ccattttcccctcccttcagtccc 298
            ||||||||||||||||||| ||||
Sbjct: 1005 ccattttcccctcccttcaatccc 982
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>gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, complete sequence
          Length = 231792

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    ctccattttcccctcccttc 292
              ||||||||||||||||||||
Sbjct: 142165 ctccattttcccctcccttc 142146
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>gb|AC138119.5| Mus musculus BAC clone RP23-307D8 from chromosome 5, complete sequence
          Length = 196908

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     ccaaataatgtatgtgcaag 91
              ||||||||||||||||||||
Sbjct: 147680 ccaaataatgtatgtgcaag 147699
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>gb|AC174780.2| Mus musculus BAC clone RP23-92D22 from chromosome 5, complete sequence
          Length = 163023

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    ccaaataatgtatgtgcaag 91
             ||||||||||||||||||||
Sbjct: 45479 ccaaataatgtatgtgcaag 45498
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>gb|AC140842.4| Mus musculus BAC clone RP24-390F5 from chromosome 5, complete sequence
          Length = 135498

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    ccaaataatgtatgtgcaag 91
             ||||||||||||||||||||
Sbjct: 65213 ccaaataatgtatgtgcaag 65194
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>gb|AC166054.3| Mus musculus BAC clone RP24-79B1 from chromosome 5, complete sequence
          Length = 241852

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     ccaaataatgtatgtgcaag 91
              ||||||||||||||||||||
Sbjct: 160292 ccaaataatgtatgtgcaag 160273



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    ccaaataatgtatgtgcaag 91
             ||||||||||||||||||||
Sbjct: 83408 ccaaataatgtatgtgcaag 83389
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>gb|AC141559.4| Mus musculus BAC clone RP24-341O14 from 5, complete sequence
          Length = 142438

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     ccaaataatgtatgtgcaag 91
              ||||||||||||||||||||
Sbjct: 103638 ccaaataatgtatgtgcaag 103619



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    ccaaataatgtatgtgcaag 91
             ||||||||||||||||||||
Sbjct: 31210 ccaaataatgtatgtgcaag 31191
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     ccgaaaccgccgccaccggg 168
               ||||||||||||||||||||
Sbjct: 1666443 ccgaaaccgccgccaccggg 1666424
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>gb|AC172105.1| Mus musculus BAC clone RP24-225O2 from chromosome 5, complete sequence
          Length = 154723

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    ccaaataatgtatgtgcaag 91
             ||||||||||||||||||||
Sbjct: 94537 ccaaataatgtatgtgcaag 94556



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    ccaaataatgtatgtgcaag 91
             ||||||||||||||||||||
Sbjct: 16413 ccaaataatgtatgtgcaag 16432
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>emb|AL358332.3|CNS05TE3 Human chromosome 14 DNA sequence BAC R-255G12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 161261

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   ccattttcccctcccttcagtccc 298
             ||||||||||||||||||| ||||
Sbjct: 69020 ccattttcccctcccttcaatccc 69043


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,605,102
Number of Sequences: 3902068
Number of extensions: 3605102
Number of successful extensions: 68092
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67985
Number of HSP's gapped (non-prelim): 99
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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