ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1W_HENDV (P0C1C6) Protein W 29 6.3
2PHOSP_HENDV (O55778) Phosphoprotein (Protein P) 29 6.3
3V_HENDV (O55777) Nonstructural protein V 29 6.3
4DUT_HHV6U (Q06095) Deoxyuridine 5'-triphosphate nucleotidohydrol... 28 8.2
5DUT_HHV6G (P30007) Deoxyuridine 5'-triphosphate nucleotidohydrol... 28 8.2

>W_HENDV (P0C1C6) Protein W|
          Length = 448

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 99  PSSETERFMTWHVLQRHDGTTE-TPHTKEGPNNP 197
           PSS  ER  ++H+   HDG     P TK  PN P
Sbjct: 128 PSSSPERGWSYHMSGTHDGNVRAVPDTKVLPNAP 161



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>PHOSP_HENDV (O55778) Phosphoprotein (Protein P)|
          Length = 707

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 99  PSSETERFMTWHVLQRHDGTTE-TPHTKEGPNNP 197
           PSS  ER  ++H+   HDG     P TK  PN P
Sbjct: 128 PSSSPERGWSYHMSGTHDGNVRAVPDTKVLPNAP 161



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>V_HENDV (O55777) Nonstructural protein V|
          Length = 457

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 99  PSSETERFMTWHVLQRHDGTTE-TPHTKEGPNNP 197
           PSS  ER  ++H+   HDG     P TK  PN P
Sbjct: 128 PSSSPERGWSYHMSGTHDGNVRAVPDTKVLPNAP 161



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>DUT_HHV6U (Q06095) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 376

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -1

Query: 326 SKLVKMLGLILK*MFILQADTVLCSHPKLFDEPEASCRVVTEIWIVRAFFCMWSFCCAVV 147
           SK +  LGL+++  +I   DT+     K+F+    +  + T I I R  F    FC +++
Sbjct: 293 SKEIAKLGLLIE-TYIWNKDTI--PSIKIFNSTRKTIYIPTGICIARIIFTCGHFCLSLM 349

Query: 146 P 144
           P
Sbjct: 350 P 350



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>DUT_HHV6G (P30007) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 376

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -1

Query: 326 SKLVKMLGLILK*MFILQADTVLCSHPKLFDEPEASCRVVTEIWIVRAFFCMWSFCCAVV 147
           SK +  LGL+++  +I   DT+     K+F+    +  + T I I R  F    FC +++
Sbjct: 293 SKEIAKLGLLIE-TYIWNKDTI--PSIKIFNSTRKTIYIPTGICIARIIFTCGHFCLSLM 349

Query: 146 P 144
           P
Sbjct: 350 P 350


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,446,411
Number of Sequences: 219361
Number of extensions: 1227349
Number of successful extensions: 3190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3190
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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