ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl43b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GATB_MYCLE (O33107) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 28 7.4
2FREM2_LYTVA (Q9GV77) Extracellular matrix protein 3 precursor (F... 27 9.7
3MRAY_SYNAS (Q2LR51) Phospho-N-acetylmuramoyl-pentapeptide-transf... 27 9.7

>GATB_MYCLE (O33107) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit|
          B (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 509

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 96 TVVVGQSSTNGVGLLDRSIFLGHNDDVFNLDL 1
          TVV G S  +G  LLD  + +   D VF L++
Sbjct: 2  TVVSGASKASGADLLDYDVVVARFDPVFGLEV 33



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>FREM2_LYTVA (Q9GV77) Extracellular matrix protein 3 precursor (FREM2 homolog)|
          Length = 3103

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -3

Query: 213  YLPEIFYHPTCEE*V*YNWFHCVVSSP---FFFCVIDRSRPDTVV 88
            Y+P+  Y+P   E      + CV  +P   + F ++DR  PDT+V
Sbjct: 2887 YIPK--YNPAANE------YGCVADTPNLLYAFKILDRGAPDTIV 2923



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>MRAY_SYNAS (Q2LR51) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 359

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 15  IHHHCALKIWICPKVLHRLLMI 80
           IHHH  LK W  PKV+ R  +I
Sbjct: 323 IHHHFELKGWAEPKVIVRFWII 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,428,609
Number of Sequences: 219361
Number of extensions: 750046
Number of successful extensions: 1718
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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