>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score =  525 bits (265), Expect = e-146
 Identities = 315/332 (94%), Gaps = 3/332 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagatccagattaaatacatcatcattgtgccctaaaaatatggatctgtccaaaagtcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 648 gagatccagattaaatacatcatcattgtgccctaaaaatatggatctgtccaaaaatcc 707

                                                                       
Query: 61  tacaccgtttgttgatgattgaccaaccacgaccgtatcaggccgagatcgatcgatgac 120
           |||||||||||||||||||||||||||| |  |||||||||||||||||| |||||||||
Sbjct: 708 tacaccgtttgttgatgattgaccaaccgcagccgtatcaggccgagatcaatcgatgac 767

                                                                       
Query: 121 gcnnnnnnnnnngggggaagaaacgacgcaatggaaccaattatactatacttattcctc 180
           ||          ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gcaaaaaaaa--gggggaagaaacgacgcaatggaaccaattatactatacttattcctc 825

                                                                       
Query: 181 gcaagttgggtgataaaaaatctctggtaggtagaatataactgacacaacagtcttcga 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gcaagttgggtgataaaaa-tctctggtaggtagaatataactgacacaacagtcttcga 884

                                                                       
Query: 241 actggagatacaaacatgatgaacacggaggtgaagccacaatagtcgtcgtcgccactt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 885 actggagatacaaacatgatgaacacggaggtgaagccacaatagtcgtcgttgccactt 944

                                           
Query: 301 atcttatctcgattgtgtaggggagcagagga 332
           ||||||||||||||||||||||||||||||||
Sbjct: 945 atcttatctcgattgtgtaggggagcagagga 976

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 303      cttatctcgattgtgtaggggagcagagga 332
                |||||||||| || ||||||||||||||||
Sbjct: 28424885 cttatctcgactgcgtaggggagcagagga 28424914

>emb|AL590377.4| Human DNA sequence from clone RP11-492A12 on chromosome 9 Contains part
              of a novel gene (FLJ20276) and a CGI-51 protein pseudogene,
              complete sequence
          Length = 129610

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 25     attgtgccctaaaaatatggat 46
              ||||||||||||||||||||||
Sbjct: 124014 attgtgccctaaaaatatggat 124035

>gb|AC159710.9| Mus musculus 10 BAC RP24-325N16 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 204302

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 2     agatccagattaaatacatcatcatt 27
             ||||||||||||||||| ||||||||
Sbjct: 88104 agatccagattaaatacttcatcatt 88129

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 303      cttatctcgattgtgtaggggagcagagga 332
                |||||||||| || ||||||||||||||||
Sbjct: 28516209 cttatctcgactgcgtaggggagcagagga 28516238

>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
             sequence
          Length = 143681

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 303   cttatctcgattgtgtaggggagcagagga 332
             |||||||||| || ||||||||||||||||
Sbjct: 19015 cttatctcgactgcgtaggggagcagagga 19044

>dbj|AK100286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075G08, full
            insert sequence
          Length = 4221

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 303  cttatctcgattgtgtaggggagcagagga 332
            |||||||||| || ||||||||||||||||
Sbjct: 3802 cttatctcgactgcgtaggggagcagagga 3773

>dbj|AK059218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C10, full
           insert sequence
          Length = 1032

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 303 cttatctcgattgtgtaggggagcagagga 332
           |||||||||| || ||||||||||||||||
Sbjct: 906 cttatctcgactgcgtaggggagcagagga 877

>gb|AC157556.12| Mus musculus chromosome 1, clone RP24-267A19, complete sequence
          Length = 198267

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 239    gaactggagatacaaacatga 259
              |||||||||||||||||||||
Sbjct: 145020 gaactggagatacaaacatga 145000

>ref|XM_469513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3657

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 304  ttatctcgattgtgtaggggagcagagga 332
            ||||||||| || ||||||||||||||||
Sbjct: 3657 ttatctcgactgcgtaggggagcagagga 3629

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 286     tcgtcgtcgccacttatctt 305
               ||||||||||||||||||||
Sbjct: 3481636 tcgtcgtcgccacttatctt 3481617

>gb|AC005021.1| Homo sapiens BAC clone GS1-293C5 from 7, complete sequence
          Length = 64607

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   aaaaatctctggtaggtaga 215
             ||||||||||||||||||||
Sbjct: 61607 aaaaatctctggtaggtaga 61626

>gb|AC109636.3| Homo sapiens BAC clone RP11-19D21 from 4, complete sequence
          Length = 71715

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   aaaaaatctctggtaggtag 214
             ||||||||||||||||||||
Sbjct: 42043 aaaaaatctctggtaggtag 42062

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 286     tcgtcgtcgccacttatctt 305
               ||||||||||||||||||||
Sbjct: 4291068 tcgtcgtcgccacttatctt 4291087

>gb|AY210982.1| Homo sapiens paraoxonase 2 (PON2) gene, complete cds
          Length = 32705

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  aaaaatctctggtaggtaga 215
            ||||||||||||||||||||
Sbjct: 2452 aaaaatctctggtaggtaga 2433

>gb|U04883.1|MSU04883 Mesepiola specca mitochondrion tRNA-Leu gene, complete sequence,
          and cytochrome oxidase subunit I and II genes, partial
          cds
          Length = 780

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 7  cagattaaatacatcatcat 26
          ||||||||||||||||||||
Sbjct: 68 cagattaaatacatcatcat 87


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,488,651
Number of Sequences: 3902068
Number of extensions: 2488651
Number of successful extensions: 42774
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42658
Number of HSP's gapped (non-prelim): 115
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)